mRNA_M-pyrifera_M_contig11705.3517.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11705.3517.1
Unique NamemRNA_M-pyrifera_M_contig11705.3517.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11705.3517.1 vs. uniprot
Match: D7G7B3_ECTSI (1-aminocyclopropane-1-carboxylate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7B3_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 5.500e-27
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 3
Query:    3 EAEARLWRQMLDRTGVNLTPGDAFHCSEPGWFRLCFAYQQTDVVTRSVDRVADFLQTIMLERAAS 197
            EAE RLWRQML+RT VNLTPG AFHC EPGWFRLCFAYQQ DVV+R+VDR+ADFL+ +  ERAA+
Sbjct:  509 EAEERLWRQMLERTKVNLTPGGAFHCVEPGWFRLCFAYQQVDVVSRAVDRIADFLEALATERAAA 573          
BLAST of mRNA_M-pyrifera_M_contig11705.3517.1 vs. uniprot
Match: A0A5K1BZM7_9MAGN (Aminotran_1_2 domain-containing protein (Fragment) n=5 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1BZM7_9MAGN)

HSP 1 Score: 74.3 bits (181), Expect = 1.430e-13
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    3 EAEARLWRQMLDRTGVNLTPGDAFHCSEPGWFRLCFAYQQTDVVTRSVDRVADFL 167
            EAE RLW+++L + G+N++PG +FHCSEPGWFR+CFA      +  S++R+  FL
Sbjct:  225 EAETRLWKKLLHQVGLNVSPGSSFHCSEPGWFRVCFANMSEKTLAVSLERIRSFL 279          
BLAST of mRNA_M-pyrifera_M_contig11705.3517.1 vs. uniprot
Match: A0A5J5ACS7_9ASTE (Aminotran_1_2 domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5ACS7_9ASTE)

HSP 1 Score: 73.2 bits (178), Expect = 5.910e-13
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 3
Query:    3 EAEARLWRQMLDRTGVNLTPGDAFHCSEPGWFRLCFAYQQTDVVTRSVDRVADFLQTI 176
            EAE  LW+++L   G+N++PG +FHC+EPGWFR+CFA    + +  S+ R+ DF+ +I
Sbjct:  372 EAEMELWKKILCEVGLNISPGSSFHCTEPGWFRVCFANMSKETLKLSMQRIKDFVDSI 429          
BLAST of mRNA_M-pyrifera_M_contig11705.3517.1 vs. uniprot
Match: UPI00053A0148 (1-aminocyclopropane-1-carboxylate synthase-like protein 1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A0148)

HSP 1 Score: 72.8 bits (177), Expect = 7.120e-13
Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 3
Query:    3 EAEARLWRQMLDRTGVNLTPGDAFHCSEPGWFRLCFAYQQTDVVTRSVDRVADFL 167
            E+E  LWR ++D+  +N++PG +FHCSEPGWFR+CFA    D +   ++R+ DF+
Sbjct:  273 ESEMALWRVIIDKVKINVSPGSSFHCSEPGWFRVCFANMDEDTLQTGLERIKDFV 327          
BLAST of mRNA_M-pyrifera_M_contig11705.3517.1 vs. uniprot
Match: A0A2C9U0K1_MANES (Aminotran_1_2 domain-containing protein n=2 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9U0K1_MANES)

HSP 1 Score: 72.8 bits (177), Expect = 8.000e-13
Identity = 26/63 (41.27%), Postives = 44/63 (69.84%), Query Frame = 3
Query:    3 EAEARLWRQMLDRTGVNLTPGDAFHCSEPGWFRLCFAYQQTDVVTRSVDRVADFLQTIMLERA 191
            EAE  LW+++L   G+N++PG + HCSEPGWFR+CFA    + +  +++R+ DF +++   R+
Sbjct:  360 EAEKELWKKILSEVGLNISPGSSCHCSEPGWFRICFANMSAETLGVAMERIKDFAESVTSNRS 422          
BLAST of mRNA_M-pyrifera_M_contig11705.3517.1 vs. uniprot
Match: B9R6U5_RICCO (Acc synthase, putative n=2 Tax=Ricinus communis TaxID=3988 RepID=B9R6U5_RICCO)

HSP 1 Score: 72.4 bits (176), Expect = 1.100e-12
Identity = 25/59 (42.37%), Postives = 45/59 (76.27%), Query Frame = 3
Query:    3 EAEARLWRQMLDRTGVNLTPGDAFHCSEPGWFRLCFAYQQTDVVTRSVDRVADFLQTIM 179
            EAE  +W+++L + G+N++PG + HCSEPGWFR+CFA    + +T +++R+  F+++I+
Sbjct:  363 EAEKEIWKKILGQVGLNISPGSSCHCSEPGWFRMCFANMSEETLTVAMERIKSFVESII 421          
BLAST of mRNA_M-pyrifera_M_contig11705.3517.1 vs. uniprot
Match: A0A5K1GMK7_9MAGN (Aminotran_1_2 domain-containing protein (Fragment) n=5 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1GMK7_9MAGN)

HSP 1 Score: 71.6 bits (174), Expect = 1.370e-12
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 3
Query:    3 EAEARLWRQMLDRTGVNLTPGDAFHCSEPGWFRLCFAYQQTDVVTRSVDRVADFLQTIMLERAASLDGEGQEP 221
            E E +LW +ML   G+N++PG +FHCSEPGWFR+CFA     V++ S+ R+  F++        S D +G+ P
Sbjct:  225 EGEMQLWMKMLHHVGINISPGSSFHCSEPGWFRVCFANMSEKVLSISLQRIKIFVKQ-------SRDKQGKAP 290          
BLAST of mRNA_M-pyrifera_M_contig11705.3517.1 vs. uniprot
Match: A0A8J4RVD3_9ROSI (Aminotran_1_2 domain-containing protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4RVD3_9ROSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.720e-12
Identity = 25/56 (44.64%), Postives = 40/56 (71.43%), Query Frame = 3
Query:    3 EAEARLWRQMLDRTGVNLTPGDAFHCSEPGWFRLCFAYQQTDVVTRSVDRVADFLQ 170
            E+E  LWR +++   +N++PG +FHCSEPGWFR+CFA    D V  +++R+  F++
Sbjct:   13 ESEMNLWRLIMNEVKLNVSPGSSFHCSEPGWFRVCFANMDDDTVEVALERIRVFVE 68          
BLAST of mRNA_M-pyrifera_M_contig11705.3517.1 vs. uniprot
Match: A0A835DRH8_9MAGN (Aminotran_1_2 domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835DRH8_9MAGN)

HSP 1 Score: 71.6 bits (174), Expect = 2.060e-12
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 3
Query:    3 EAEARLWRQMLDRTGVNLTPGDAFHCSEPGWFRLCFAYQQTDVVTRSVDRVADFLQTI 176
            EAE  LW+++L   G+N++PG + HC+EPGWFR+CFA    D +  S+ R+  F+Q+I
Sbjct:  374 EAEMELWKKVLYEVGLNISPGSSCHCTEPGWFRVCFANMSEDTLNLSMQRIKSFVQSI 431          
BLAST of mRNA_M-pyrifera_M_contig11705.3517.1 vs. uniprot
Match: A0A022Q458_ERYGU (Aminotran_1_2 domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q458_ERYGU)

HSP 1 Score: 71.6 bits (174), Expect = 2.070e-12
Identity = 26/62 (41.94%), Postives = 43/62 (69.35%), Query Frame = 3
Query:    3 EAEARLWRQMLDRTGVNLTPGDAFHCSEPGWFRLCFAYQQTDVVTRSVDRVADFLQTIMLER 188
            EAEA LWR +++   +N++PG  FHCSEPGWFR+CFA    + V  +++R+ +F+  +  ++
Sbjct:  373 EAEAELWRMIIEDVKINVSPGAPFHCSEPGWFRVCFANMDDEAVRVAINRIHEFVMIVQTKK 434          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11705.3517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7B3_ECTSI5.500e-2776.921-aminocyclopropane-1-carboxylate synthase n=2 Tax... [more]
A0A5K1BZM7_9MAGN1.430e-1350.91Aminotran_1_2 domain-containing protein (Fragment)... [more]
A0A5J5ACS7_9ASTE5.910e-1346.55Aminotran_1_2 domain-containing protein n=1 Tax=Ny... [more]
UPI00053A01487.120e-1347.271-aminocyclopropane-1-carboxylate synthase-like pr... [more]
A0A2C9U0K1_MANES8.000e-1341.27Aminotran_1_2 domain-containing protein n=2 Tax=Ma... [more]
B9R6U5_RICCO1.100e-1242.37Acc synthase, putative n=2 Tax=Ricinus communis Ta... [more]
A0A5K1GMK7_9MAGN1.370e-1242.47Aminotran_1_2 domain-containing protein (Fragment)... [more]
A0A8J4RVD3_9ROSI1.720e-1244.64Aminotran_1_2 domain-containing protein n=1 Tax=Ca... [more]
A0A835DRH8_9MAGN2.060e-1246.55Aminotran_1_2 domain-containing protein n=1 Tax=Te... [more]
A0A022Q458_ERYGU2.070e-1241.94Aminotran_1_2 domain-containing protein n=1 Tax=Er... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11705contigM-pyrifera_M_contig11705:5551..6167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.5
Seed ortholog evalue5.9e-08
Seed eggNOG ortholog90675.XP_010469085.1
Preferred nameACS2
KEGG rclassRC00021,RC01124
KEGG koko:K01762,ko:K20772
KEGG ReactionR00179
KEGG Pathwayko00270,ko01100,ko01110,ko04016,map00270,map01100,map01110,map04016
KEGG ModuleM00368
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Aminotransferase class I and II
EggNOG OGs37M61@33090,3GDW4@35493,3HNRK@3699,COG0436@1,KOG0256@2759
EC4.4.1.14
COG Functional cat.T
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Exons2
Model size313
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11705.3517.1prot_M-pyrifera_M_contig11705.3517.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11705 5551..6138 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.272252-CDS-M-pyrifera_M_contig11705:5550..57421622815687.272252-CDS-M-pyrifera_M_contig11705:5550..5742Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11705 5551..5742 -
1692277522.0745358-CDS-M-pyrifera_M_contig11705:5550..57421692277522.0745358-CDS-M-pyrifera_M_contig11705:5550..5742Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11705 5551..5742 -
1622815687.2826407-CDS-M-pyrifera_M_contig11705:6048..61381622815687.2826407-CDS-M-pyrifera_M_contig11705:6048..6138Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11705 6049..6138 -
1692277522.0900414-CDS-M-pyrifera_M_contig11705:6048..61381692277522.0900414-CDS-M-pyrifera_M_contig11705:6048..6138Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11705 6049..6138 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.294419-UTR-M-pyrifera_M_contig11705:6138..61671622815687.294419-UTR-M-pyrifera_M_contig11705:6138..6167Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11705 6139..6167 -
1692277522.1040144-UTR-M-pyrifera_M_contig11705:6138..61671692277522.1040144-UTR-M-pyrifera_M_contig11705:6138..6167Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11705 6139..6167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11705.3517.1

>prot_M-pyrifera_M_contig11705.3517.1 ID=prot_M-pyrifera_M_contig11705.3517.1|Name=mRNA_M-pyrifera_M_contig11705.3517.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MLDRTGVNLTPGDAFHCSEPGWFRLCFAYQQTDVVTRSVDRVADFLQTIM
LERAASLDGEGQEPPTPVPPLPATAGSPATATTSAAAAATAAFT
back to top

mRNA from alignment at M-pyrifera_M_contig11705:5551..6167-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11705.3517.1 ID=mRNA_M-pyrifera_M_contig11705.3517.1|Name=mRNA_M-pyrifera_M_contig11705.3517.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=617bp|location=Sequence derived from alignment at M-pyrifera_M_contig11705:5551..6167- (Macrocystis pyrifera P11B4 male)
AGGAAGCAGAGGCGAGGCTGTGGCGACAGATGCTGGACAGGACCGGGGTC AACCTTACACCTGGAGATGCTTTCCACTGCTCCGAGCCGGGGTGGTTTCG CCTTTGCTTCGCCTACCAGGTATGGCAGAGGGATAGAGCGGGACATAGCC CCCCCCCCTGAGCTCTCCATTATAAGACGGTTGTGTTAAGCAACGGCGAA TTGGGTGCGGTGTTGGGGAGTACCGTTTTTCTTCAAATGCGGCGTAATTA GCACCGTTTCGGATAGCGGTTTCTGTTTCGTTCGAGGCACCGGCTTGTTA GCTTCCACATGTAGTAGACACGCGGACGTGCGGAGCTATTGCACCCAAAT ACCTTCCCCTCTCCCCCCCTCCCTCCCTTCCCCCCCTCTCCCCCTTCGCC CGCCTCGCTCTCTCGCTCGTCTCAGCAAACCGACGTAGTAACTCGGTCGG TAGATCGCGTGGCCGACTTCCTGCAGACGATCATGCTCGAGCGAGCCGCT AGCCTAGACGGAGAGGGACAAGAGCCACCAACGCCGGTACCACCACTTCC AGCCACTGCTGGTTCCCCCGCTACTGCTACTACTAGTGCTGCTGCTGCTG CTACTGCCGCTTTTACC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11705:5551..6167-

>mRNA_M-pyrifera_M_contig11705.3517.1 ID=mRNA_M-pyrifera_M_contig11705.3517.1|Name=mRNA_M-pyrifera_M_contig11705.3517.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig11705:5551..6167- (Macrocystis pyrifera P11B4 male)
ATGCTGGACAGGACCGGGGTCAACCTTACACCTGGAGATGCTTTCCACTG
CTCCGAGCCGGGGTGGTTTCGCCTTTGCTTCGCCTACCAGATGCTGGACA
GGACCGGGGTCAACCTTACACCTGGAGATGCTTTCCACTGCTCCGAGCCG
GGGTGGTTTCGCCTTTGCTTCGCCTACCAGCAAACCGACGTAGTAACTCG
GTCGGTAGATCGCGTGGCCGACTTCCTGCAGACGATCATGCTCGAGCGAG
CCGCTAGCCTAGACGGAGAGGGACAAGAGCCACCAACGCCGGTACCACCA
CTTCCAGCCACTGCTGGTTCCCCCGCTACTGCTACTACTAGTGCTGCTGC
TGCTGCTACTGCCGCTTTTACCCAAACCGACGTAGTAACTCGGTCGGTAG
ATCGCGTGGCCGACTTCCTGCAGACGATCATGCTCGAGCGAGCCGCTAGC
CTAGACGGAGAGGGACAAGAGCCACCAACGCCGGTACCACCACTTCCAGC
CACTGCTGGTTCCCCCGCTACTGCTACTACTAGTGCTGCTGCTGCTGCTA
CTGCCGCTTTTACC
back to top