mRNA_M-pyrifera_M_contig117.3512.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117.3512.1
Unique NamemRNA_M-pyrifera_M_contig117.3512.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117.3512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117contigM-pyrifera_M_contig117:30743..31173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size431
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117.3512.1prot_M-pyrifera_M_contig117.3512.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117 30751..31065 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.7001753-UTR-M-pyrifera_M_contig117:30742..307501622815686.7001753-UTR-M-pyrifera_M_contig117:30742..30750Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117 30743..30750 +
1692277521.6589277-UTR-M-pyrifera_M_contig117:30742..307501692277521.6589277-UTR-M-pyrifera_M_contig117:30742..30750Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117 30743..30750 +
1622815686.7231638-UTR-M-pyrifera_M_contig117:31065..311731622815686.7231638-UTR-M-pyrifera_M_contig117:31065..31173Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117 31066..31173 +
1692277521.678004-UTR-M-pyrifera_M_contig117:31065..311731692277521.678004-UTR-M-pyrifera_M_contig117:31065..31173Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117 31066..31173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.7120283-CDS-M-pyrifera_M_contig117:30750..310651622815686.7120283-CDS-M-pyrifera_M_contig117:30750..31065Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117 30751..31065 +
1692277521.6680715-CDS-M-pyrifera_M_contig117:30750..310651692277521.6680715-CDS-M-pyrifera_M_contig117:30750..31065Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117 30751..31065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117.3512.1

>prot_M-pyrifera_M_contig117.3512.1 ID=prot_M-pyrifera_M_contig117.3512.1|Name=mRNA_M-pyrifera_M_contig117.3512.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MRGMFLVHVSRLRYSVCNRYWDCVRTFISRFLGIGKEEASILVWQAVLAR
LGILGHTYHVLFMLSPDLPAGGISRPLCRLQTRRRFHFQYSVVRLPAKAL
HLRE*
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mRNA from alignment at M-pyrifera_M_contig117:30743..31173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117.3512.1 ID=mRNA_M-pyrifera_M_contig117.3512.1|Name=mRNA_M-pyrifera_M_contig117.3512.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=431bp|location=Sequence derived from alignment at M-pyrifera_M_contig117:30743..31173+ (Macrocystis pyrifera P11B4 male)
CAGACTTTATGAGGGGTATGTTTCTCGTTCATGTGTCGCGGTTGCGCTAT
AGTGTTTGCAATCGGTACTGGGATTGTGTTCGTACTTTTATTTCACGTTT
CTTGGGAATTGGGAAAGAAGAGGCTAGTATTTTGGTGTGGCAGGCGGTCC
TTGCTCGGTTGGGCATATTAGGGCATACATACCATGTCCTTTTTATGTTG
AGCCCAGATCTCCCGGCGGGCGGCATCAGCCGGCCGCTGTGCAGACTCCA
AACTAGACGTCGCTTCCATTTCCAATATAGCGTGGTGCGTTTACCAGCTA
AGGCATTGCACTTACGGGAGTAGGACTTTGAAATGTGGCACTTCTACGGT
AGTGTGGTGAAGTGAAGAGACATTTGGTAAGATGTAAGATGAAATATTCC
GTTTTTTTCCGTAATTGAACGCCTCTAACCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117:30743..31173+

>mRNA_M-pyrifera_M_contig117.3512.1 ID=mRNA_M-pyrifera_M_contig117.3512.1|Name=mRNA_M-pyrifera_M_contig117.3512.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig117:30743..31173+ (Macrocystis pyrifera P11B4 male)
ATGAGGGGTATGTTTCTCGTTCATGTGTCGCGGTTGCGCTATAGTGTTTG
CAATCGGTACTGGGATTGTGTTCGTACTTTTATTTCACGTTTCTTGGGAA
TTGGGAAAGAAGAGGCTAGTATTTTGGTGTGGCAGGCGGTCCTTGCTCGG
TTGGGCATATTAGGGCATACATACCATGTCCTTTTTATGTTGAGCCCAGA
TCTCCCGGCGGGCGGCATCAGCCGGCCGCTGTGCAGACTCCAAACTAGAC
GTCGCTTCCATTTCCAATATAGCGTGGTGCGTTTACCAGCTAAGGCATTG
CACTTACGGGAGTAGATGAGGGGTATGTTTCTCGTTCATGTGTCGCGGTT
GCGCTATAGTGTTTGCAATCGGTACTGGGATTGTGTTCGTACTTTTATTT
CACGTTTCTTGGGAATTGGGAAAGAAGAGGCTAGTATTTTGGTGTGGCAG
GCGGTCCTTGCTCGGTTGGGCATATTAGGGCATACATACCATGTCCTTTT
TATGTTGAGCCCAGATCTCCCGGCGGGCGGCATCAGCCGGCCGCTGTGCA
GACTCCAAACTAGACGTCGCTTCCATTTCCAATATAGCGTGGTGCGTTTA
CCAGCTAAGGCATTGCACTTACGGGAGTAG
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