mRNA_M-pyrifera_M_contig116930.3503.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A518FKS6_9PLAN (Catabolite control protein A n=9 Tax=Gimesia TaxID=1649453 RepID=A0A518FKS6_9PLAN) HSP 1 Score: 112 bits (281), Expect = 2.370e-28 Identity = 67/75 (89.33%), Postives = 73/75 (97.33%), Query Frame = 1
Query: 1 MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
MS+S NK +TLKEVAAAAGVSVSTASRALSGKAEAYRISS+TEQSVRKAA+KLQFSPSLLARSLRSQ+T+LLGVV
Sbjct: 1 MSQSSNKPVTLKEVAAAAGVSVSTASRALSGKAEAYRISSSTEQSVRKAAQKLQFSPSLLARSLRSQQTRLLGVV 75
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A2E2CB15_9PLAN (LacI family transcriptional regulator n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E2CB15_9PLAN) HSP 1 Score: 109 bits (272), Expect = 4.920e-27 Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1
Query: 1 MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
MS S NKS+TLKEVA AAGVSVSTASRALSGKAEA RISSATEQSVR+AA+KLQFSPSLLARSLRSQ+TKLLGVV
Sbjct: 1 MSNSSNKSVTLKEVAEAAGVSVSTASRALSGKAEACRISSATEQSVREAAKKLQFSPSLLARSLRSQQTKLLGVV 75
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A355G8L4_9PLAN (LacI family transcriptional regulator n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355G8L4_9PLAN) HSP 1 Score: 107 bits (268), Expect = 1.890e-26 Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query: 1 MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
MS S NKS+TLKEVA AAGVSVSTASRALSGK EA RISSATEQSVR+AA+KLQFSPSLLARSLRSQ+TKLLGVV
Sbjct: 1 MSNSSNKSVTLKEVAEAAGVSVSTASRALSGKTEACRISSATEQSVREAAKKLQFSPSLLARSLRSQQTKLLGVV 75
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A517V9I1_9PLAN (Catabolite control protein A n=3 Tax=Gimesia TaxID=1649453 RepID=A0A517V9I1_9PLAN) HSP 1 Score: 105 bits (263), Expect = 1.010e-25 Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 1
Query: 1 MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
M KS NKS+TLKEVA AAGVSVSTASRALSGKAEA RISSATEQ+V AA+KLQFSPSLLARSLRSQ+TKLLGVV
Sbjct: 1 MGKSANKSVTLKEVAEAAGVSVSTASRALSGKAEACRISSATEQTVLDAAKKLQFSPSLLARSLRSQQTKLLGVV 75
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A518IB34_9PLAN (Catabolite control protein A n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IB34_9PLAN) HSP 1 Score: 103 bits (258), Expect = 5.430e-25 Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query: 1 MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
MSKS K+ITLKEVA AAGVSVSTASRALSGKAEAYRIS ATEQSV+ AA++LQFSPSLLA+SLRSQ+T+LLGVV
Sbjct: 1 MSKSRTKAITLKEVAEAAGVSVSTASRALSGKAEAYRISRATEQSVQAAAKRLQFSPSLLAKSLRSQRTRLLGVV 75
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A517VZ17_9PLAN (HTH-type transcriptional repressor CytR n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VZ17_9PLAN) HSP 1 Score: 99.4 bits (246), Expect = 3.010e-23 Identity = 59/75 (78.67%), Postives = 68/75 (90.67%), Query Frame = 1
Query: 1 MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
MS S NK ITLK+VA AAGVSVSTASRAL+GKAEAYRIS +TE+SV+ AA++LQF PSLLA+SLRSQ+TKLLGVV
Sbjct: 1 MSHSANKQITLKQVAEAAGVSVSTASRALAGKAEAYRISRSTERSVQAAAKRLQFQPSLLAKSLRSQRTKLLGVV 75
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A517ZFC3_9PLAN (HTH-type transcriptional regulator DegA n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517ZFC3_9PLAN) HSP 1 Score: 77.8 bits (190), Expect = 3.050e-15 Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1
Query: 25 ITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
+TL+ VA AAGVSVSTASRAL+GKA+ YRIS TE+SVR AA++L F PS +ARSLRSQK+ LLGV+
Sbjct: 6 VTLRHVADAAGVSVSTASRALAGKAQQYRISQQTERSVRSAADRLGFRPSHVARSLRSQKSGLLGVL 72
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A5Q3L8S5_9BACT (Ribose operon repressor RbsR n=1 Tax=Planctomycetales bacterium 10988 TaxID=2603660 RepID=A0A5Q3L8S5_9BACT) HSP 1 Score: 77.4 bits (189), Expect = 4.280e-15 Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1
Query: 25 ITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
+TL+EVA AGVSVSTASRAL+GKAE YRIS TE+S+R AE+L F PS LARSLR+Q+T L+GV+
Sbjct: 6 VTLREVAEEAGVSVSTASRALTGKAEQYRISKKTERSIRDVAERLGFRPSHLARSLRNQRTGLVGVL 72
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: UPI001EE89E86 (LacI family transcriptional regulator n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE89E86) HSP 1 Score: 76.6 bits (187), Expect = 8.190e-15 Identity = 47/66 (71.21%), Postives = 57/66 (86.36%), Query Frame = 1
Query: 28 TLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
TL++VA AAGVSVSTASRAL+GKA YRISS TE +V++AA+KL+F PS A++LRSQKT LLGVV
Sbjct: 7 TLQQVADAAGVSVSTASRALAGKAREYRISSRTEAAVQQAAQKLKFRPSRTAQALRSQKTGLLGVV 72
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A517MHS2_9BACT (HTH-type transcriptional regulator DegA n=2 Tax=Roseimaritima multifibrata TaxID=1930274 RepID=A0A517MHS2_9BACT) HSP 1 Score: 75.5 bits (184), Expect = 2.790e-14 Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 1
Query: 25 ITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
+TLK+VAAAAGVSVS ASR L+G A+AYRIS TEQ VR A +L F PS +ARSLR QK+K++GVV
Sbjct: 66 VTLKQVAAAAGVSVSVASRVLNGHAKAYRISDQTEQQVRGIASELDFRPSQIARSLRLQKSKMIGVV 132 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig116930.3503.1 >prot_M-pyrifera_M_contig116930.3503.1 ID=prot_M-pyrifera_M_contig116930.3503.1|Name=mRNA_M-pyrifera_M_contig116930.3503.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAback to top mRNA from alignment at M-pyrifera_M_contig116930:333..557+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig116930.3503.1 ID=mRNA_M-pyrifera_M_contig116930.3503.1|Name=mRNA_M-pyrifera_M_contig116930.3503.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig116930:333..557+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig116930:333..557+ >mRNA_M-pyrifera_M_contig116930.3503.1 ID=mRNA_M-pyrifera_M_contig116930.3503.1|Name=mRNA_M-pyrifera_M_contig116930.3503.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig116930:333..557+ (Macrocystis pyrifera P11B4 male)back to top |