mRNA_M-pyrifera_M_contig116930.3503.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116930.3503.1
Unique NamemRNA_M-pyrifera_M_contig116930.3503.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A518FKS6_9PLAN (Catabolite control protein A n=9 Tax=Gimesia TaxID=1649453 RepID=A0A518FKS6_9PLAN)

HSP 1 Score: 112 bits (281), Expect = 2.370e-28
Identity = 67/75 (89.33%), Postives = 73/75 (97.33%), Query Frame = 1
Query:    1 MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
            MS+S NK +TLKEVAAAAGVSVSTASRALSGKAEAYRISS+TEQSVRKAA+KLQFSPSLLARSLRSQ+T+LLGVV
Sbjct:    1 MSQSSNKPVTLKEVAAAAGVSVSTASRALSGKAEAYRISSSTEQSVRKAAQKLQFSPSLLARSLRSQQTRLLGVV 75          
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A2E2CB15_9PLAN (LacI family transcriptional regulator n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E2CB15_9PLAN)

HSP 1 Score: 109 bits (272), Expect = 4.920e-27
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1
Query:    1 MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
            MS S NKS+TLKEVA AAGVSVSTASRALSGKAEA RISSATEQSVR+AA+KLQFSPSLLARSLRSQ+TKLLGVV
Sbjct:    1 MSNSSNKSVTLKEVAEAAGVSVSTASRALSGKAEACRISSATEQSVREAAKKLQFSPSLLARSLRSQQTKLLGVV 75          
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A355G8L4_9PLAN (LacI family transcriptional regulator n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A355G8L4_9PLAN)

HSP 1 Score: 107 bits (268), Expect = 1.890e-26
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    1 MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
            MS S NKS+TLKEVA AAGVSVSTASRALSGK EA RISSATEQSVR+AA+KLQFSPSLLARSLRSQ+TKLLGVV
Sbjct:    1 MSNSSNKSVTLKEVAEAAGVSVSTASRALSGKTEACRISSATEQSVREAAKKLQFSPSLLARSLRSQQTKLLGVV 75          
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A517V9I1_9PLAN (Catabolite control protein A n=3 Tax=Gimesia TaxID=1649453 RepID=A0A517V9I1_9PLAN)

HSP 1 Score: 105 bits (263), Expect = 1.010e-25
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    1 MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
            M KS NKS+TLKEVA AAGVSVSTASRALSGKAEA RISSATEQ+V  AA+KLQFSPSLLARSLRSQ+TKLLGVV
Sbjct:    1 MGKSANKSVTLKEVAEAAGVSVSTASRALSGKAEACRISSATEQTVLDAAKKLQFSPSLLARSLRSQQTKLLGVV 75          
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A518IB34_9PLAN (Catabolite control protein A n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IB34_9PLAN)

HSP 1 Score: 103 bits (258), Expect = 5.430e-25
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    1 MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
            MSKS  K+ITLKEVA AAGVSVSTASRALSGKAEAYRIS ATEQSV+ AA++LQFSPSLLA+SLRSQ+T+LLGVV
Sbjct:    1 MSKSRTKAITLKEVAEAAGVSVSTASRALSGKAEAYRISRATEQSVQAAAKRLQFSPSLLAKSLRSQRTRLLGVV 75          
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A517VZ17_9PLAN (HTH-type transcriptional repressor CytR n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VZ17_9PLAN)

HSP 1 Score: 99.4 bits (246), Expect = 3.010e-23
Identity = 59/75 (78.67%), Postives = 68/75 (90.67%), Query Frame = 1
Query:    1 MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
            MS S NK ITLK+VA AAGVSVSTASRAL+GKAEAYRIS +TE+SV+ AA++LQF PSLLA+SLRSQ+TKLLGVV
Sbjct:    1 MSHSANKQITLKQVAEAAGVSVSTASRALAGKAEAYRISRSTERSVQAAAKRLQFQPSLLAKSLRSQRTKLLGVV 75          
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A517ZFC3_9PLAN (HTH-type transcriptional regulator DegA n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517ZFC3_9PLAN)

HSP 1 Score: 77.8 bits (190), Expect = 3.050e-15
Identity = 47/67 (70.15%), Postives = 57/67 (85.07%), Query Frame = 1
Query:   25 ITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
            +TL+ VA AAGVSVSTASRAL+GKA+ YRIS  TE+SVR AA++L F PS +ARSLRSQK+ LLGV+
Sbjct:    6 VTLRHVADAAGVSVSTASRALAGKAQQYRISQQTERSVRSAADRLGFRPSHVARSLRSQKSGLLGVL 72          
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A5Q3L8S5_9BACT (Ribose operon repressor RbsR n=1 Tax=Planctomycetales bacterium 10988 TaxID=2603660 RepID=A0A5Q3L8S5_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 4.280e-15
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 1
Query:   25 ITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
            +TL+EVA  AGVSVSTASRAL+GKAE YRIS  TE+S+R  AE+L F PS LARSLR+Q+T L+GV+
Sbjct:    6 VTLREVAEEAGVSVSTASRALTGKAEQYRISKKTERSIRDVAERLGFRPSHLARSLRNQRTGLVGVL 72          
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: UPI001EE89E86 (LacI family transcriptional regulator n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE89E86)

HSP 1 Score: 76.6 bits (187), Expect = 8.190e-15
Identity = 47/66 (71.21%), Postives = 57/66 (86.36%), Query Frame = 1
Query:   28 TLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
            TL++VA AAGVSVSTASRAL+GKA  YRISS TE +V++AA+KL+F PS  A++LRSQKT LLGVV
Sbjct:    7 TLQQVADAAGVSVSTASRALAGKAREYRISSRTEAAVQQAAQKLKFRPSRTAQALRSQKTGLLGVV 72          
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Match: A0A517MHS2_9BACT (HTH-type transcriptional regulator DegA n=2 Tax=Roseimaritima multifibrata TaxID=1930274 RepID=A0A517MHS2_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 2.790e-14
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 1
Query:   25 ITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAAEKLQFSPSLLARSLRSQKTKLLGVV 225
            +TLK+VAAAAGVSVS ASR L+G A+AYRIS  TEQ VR  A +L F PS +ARSLR QK+K++GVV
Sbjct:   66 VTLKQVAAAAGVSVSVASRVLNGHAKAYRISDQTEQQVRGIASELDFRPSQIARSLRLQKSKMIGVV 132          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116930.3503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518FKS6_9PLAN2.370e-2889.33Catabolite control protein A n=9 Tax=Gimesia TaxID... [more]
A0A2E2CB15_9PLAN4.920e-2789.33LacI family transcriptional regulator n=4 Tax=Gime... [more]
A0A355G8L4_9PLAN1.890e-2688.00LacI family transcriptional regulator n=1 Tax=Plan... [more]
A0A517V9I1_9PLAN1.010e-2586.67Catabolite control protein A n=3 Tax=Gimesia TaxID... [more]
A0A518IB34_9PLAN5.430e-2584.00Catabolite control protein A n=2 Tax=Gimesia TaxID... [more]
A0A517VZ17_9PLAN3.010e-2378.67HTH-type transcriptional repressor CytR n=2 Tax=Gi... [more]
A0A517ZFC3_9PLAN3.050e-1570.15HTH-type transcriptional regulator DegA n=1 Tax=Ma... [more]
A0A5Q3L8S5_9BACT4.280e-1568.66Ribose operon repressor RbsR n=1 Tax=Planctomyceta... [more]
UPI001EE89E868.190e-1571.21LacI family transcriptional regulator n=1 Tax=Rubi... [more]
A0A517MHS2_9BACT2.790e-1467.16HTH-type transcriptional regulator DegA n=2 Tax=Ro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116930contigM-pyrifera_M_contig116930:333..557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score114.0
Seed ortholog evalue3e-23
Seed eggNOG ortholog344747.PM8797T_01089
KEGG koko:K02529
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG1609 Transcriptional regulators
EggNOG OGs2J0AF@203682,COG1609@1,COG1609@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.3586848-CDS-M-pyrifera_M_contig116930:332..5571622815686.3586848-CDS-M-pyrifera_M_contig116930:332..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116930 333..557 +
1692277521.5215816-CDS-M-pyrifera_M_contig116930:332..5571692277521.5215816-CDS-M-pyrifera_M_contig116930:332..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116930 333..557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116930.3503.1prot_M-pyrifera_M_contig116930.3503.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116930 333..557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116930.3503.1

>prot_M-pyrifera_M_contig116930.3503.1 ID=prot_M-pyrifera_M_contig116930.3503.1|Name=mRNA_M-pyrifera_M_contig116930.3503.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MSKSVNKSITLKEVAAAAGVSVSTASRALSGKAEAYRISSATEQSVRKAA
EKLQFSPSLLARSLRSQKTKLLGVV
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mRNA from alignment at M-pyrifera_M_contig116930:333..557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116930.3503.1 ID=mRNA_M-pyrifera_M_contig116930.3503.1|Name=mRNA_M-pyrifera_M_contig116930.3503.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig116930:333..557+ (Macrocystis pyrifera P11B4 male)
ATGAGCAAGTCTGTAAACAAATCGATTACGTTGAAAGAGGTCGCTGCCGC TGCCGGAGTGAGCGTGTCGACGGCTTCACGGGCCCTCTCCGGGAAGGCGG AAGCGTATCGCATCAGCAGTGCGACCGAGCAGTCGGTGCGGAAAGCAGCC GAAAAACTGCAGTTCTCCCCCAGCCTGTTGGCGCGGTCGTTGCGTTCTCA GAAGACGAAACTTCTGGGAGTGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116930:333..557+

>mRNA_M-pyrifera_M_contig116930.3503.1 ID=mRNA_M-pyrifera_M_contig116930.3503.1|Name=mRNA_M-pyrifera_M_contig116930.3503.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig116930:333..557+ (Macrocystis pyrifera P11B4 male)
ATGAGCAAGTCTGTAAACAAATCGATTACGTTGAAAGAGGTCGCTGCCGC
TGCCGGAGTGAGCGTGTCGACGGCTTCACGGGCCCTCTCCGGGAAGGCGG
AAGCGTATCGCATCAGCAGTGCGACCGAGCAGTCGGTGCGGAAAGCAGCC
GAAAAACTGCAGTTCTCCCCCAGCCTGTTGGCGCGGTCGTTGCGTTCTCA
GAAGACGAAACTTCTGGGAGTGGTGATGAGCAAGTCTGTAAACAAATCGA
TTACGTTGAAAGAGGTCGCTGCCGCTGCCGGAGTGAGCGTGTCGACGGCT
TCACGGGCCCTCTCCGGGAAGGCGGAAGCGTATCGCATCAGCAGTGCGAC
CGAGCAGTCGGTGCGGAAAGCAGCCGAAAAACTGCAGTTCTCCCCCAGCC
TGTTGGCGCGGTCGTTGCGTTCTCAGAAGACGAAACTTCTGGGAGTGGTG
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