mRNA_M-pyrifera_M_contig116913.3500.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116913.3500.1
Unique NamemRNA_M-pyrifera_M_contig116913.3500.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116913.3500.1 vs. uniprot
Match: A0A7X5WUY5_9ACTN (Phosphatidate cytidylyltransferase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WUY5_9ACTN)

HSP 1 Score: 178 bits (452), Expect = 2.070e-54
Identity = 89/125 (71.20%), Postives = 105/125 (84.00%), Query Frame = 1
Query:    1 YDVGALAIGKVMGRTPLSPASPNKTMEGLVGGMVVAVAVAVIIGIMGGPAPFG-GDVWGGGFGASLLLGLVAALAAPIGDLAESQLKRDLGIKDMGTILPGHGGLLDRFDGLLFVLPATYYVGQL 372
            YDVG L IG+ MGRTPLS ASPNKTMEGLVGG V A+ V +++G++  P+P   GD+ GGG G +LLLG+VAA  AP+GDLAESQLKRDLGIKDMG+ILPGHGGLLDRFD +LFVLPATYYV ++
Sbjct:   85 YDVGGLFIGRAMGRTPLSAASPNKTMEGLVGGCVAAIVVGLVMGLLEQPSPLANGDLDGGGLGTALLLGVVAAATAPVGDLAESQLKRDLGIKDMGSILPGHGGLLDRFDSMLFVLPATYYVARI 209          
BLAST of mRNA_M-pyrifera_M_contig116913.3500.1 vs. uniprot
Match: A0A358A5F1_9ACTN (Phosphatidate cytidylyltransferase n=8 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A5F1_9ACTN)

HSP 1 Score: 168 bits (426), Expect = 5.600e-48
Identity = 82/124 (66.13%), Postives = 99/124 (79.84%), Query Frame = 1
Query:    1 YDVGALAIGKVMGRTPLSPASPNKTMEGLVGGMVVAVAVAVIIGIMGGPAPFGGDVW-GGGFGASLLLGLVAALAAPIGDLAESQLKRDLGIKDMGTILPGHGGLLDRFDGLLFVLPATYYVGQ 369
            YD+G L +GK +GRTPLS ASPNKTMEGL+GGMVV +  A+++G +G PAP  G+ + G G    + +G+ AALAAPIGDLAESQ+KRDLGIKDMGTILPGHGGLLDRFDGLLFVLP  ++   
Sbjct:  310 YDIGGLFVGKALGRTPLSSASPNKTMEGLIGGMVVVLLAAIVMGFIGQPAPLAGEAFDGSGLFTMIGIGIAAALAAPIGDLAESQIKRDLGIKDMGTILPGHGGLLDRFDGLLFVLPTVWFAAN 433          
BLAST of mRNA_M-pyrifera_M_contig116913.3500.1 vs. uniprot
Match: A0A6B1B264_9ACTN (Phosphatidate cytidylyltransferase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B264_9ACTN)

HSP 1 Score: 165 bits (418), Expect = 5.800e-47
Identity = 80/125 (64.00%), Postives = 98/125 (78.40%), Query Frame = 1
Query:    1 YDVGALAIGKVMGRTPLSPASPNKTMEGLVGGMVVAVAVAVIIGIMGGPAPFGGDVWGGGFGASLLLGLVAALAAPIGDLAESQLKRDLGIKDMGTILPGHGGLLDRFDGLLFVLPATYYVGQLV 375
            YD GAL +G+ MGR+PLS ASPNKT+EGLVGG+V A+  A ++G +  P+P      GGGF   L+LG+ AA+AAP GDLAESQ+KRDLGIKDMG+ILP HGG+LDRFD LLFVLP T+YV + V
Sbjct:  293 YDTGALVVGRTMGRSPLSAASPNKTLEGLVGGVVAAIGAAFVMGFLSQPSPLADVSTGGGFTDILILGIAAAIAAPAGDLAESQIKRDLGIKDMGSILPSHGGILDRFDSLLFVLPTTFYVSRFV 417          
BLAST of mRNA_M-pyrifera_M_contig116913.3500.1 vs. uniprot
Match: A0A3M2GIP3_ACTSX (Phosphatidate cytidylyltransferase (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GIP3_ACTSX)

HSP 1 Score: 162 bits (410), Expect = 8.480e-47
Identity = 81/125 (64.80%), Postives = 101/125 (80.80%), Query Frame = 1
Query:    1 YDVGALAIGKVMGRTPLSPASPNKTMEGLVGGMVVAVAVAVIIGIMGGPAPFGGDVWGGGFGASLLLGLVAALAAPIGDLAESQLKRDLGIKDMGTILPGHGGLLDRFDGLLFVLPATYYVGQLV 375
            YDVG L +G+  GRTPLSPASPNKT+EGL+GG   AV V V++GI+G PAPF  D+  GGF  SL LG+ AA+ AP+GDL ES LKRDLG+KDMG++LPGHGG+LDRFD +LFVLP T++V ++V
Sbjct:  192 YDVGGLFVGRAAGRTPLSPASPNKTVEGLIGGCAAAVGVGVVMGILGKPAPFA-DL-PGGFVESLALGVAAAVVAPLGDLTESLLKRDLGVKDMGSLLPGHGGVLDRFDSMLFVLPTTWFVARVV 314          
BLAST of mRNA_M-pyrifera_M_contig116913.3500.1 vs. uniprot
Match: A0A351XDI5_9ACTN (Phosphatidate cytidylyltransferase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351XDI5_9ACTN)

HSP 1 Score: 160 bits (405), Expect = 1.220e-46
Identity = 80/127 (62.99%), Postives = 100/127 (78.74%), Query Frame = 1
Query:    1 YDVGALAIGKVMGRTPLSPASPNKTMEGLVGGMVVAVAVAVIIGIMGGPAPFGGDVWGGGFGASLLLGLVAALAAPIGDLAESQLKRDLGIKDMGTILPGHGGLLDRFDGLLFVLPATYYVGQLVDV 381
            YD+G   +G ++GRTPLS  SPNKTMEGL+GGMV + A+A+++  +G   PFG D   G  G++ +LGLV ALAAP GDL ES +KRDLGIKDMG+ILPGHGGL+DRFD LLFVLPATYY  +L+D+
Sbjct:  139 YDIGGFVVGGMIGRTPLSAVSPNKTMEGLLGGMVASFAIAMLV--VGRITPFGQDP--GDLGSAFILGLVVALAAPAGDLCESMIKRDLGIKDMGSILPGHGGLMDRFDALLFVLPATYYTARLLDL 261          
BLAST of mRNA_M-pyrifera_M_contig116913.3500.1 vs. uniprot
Match: A0A6B1EDM2_9ACTN (Phosphatidate cytidylyltransferase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EDM2_9ACTN)

HSP 1 Score: 162 bits (411), Expect = 3.990e-46
Identity = 83/130 (63.85%), Postives = 101/130 (77.69%), Query Frame = 1
Query:    1 YDVGALAIGKVMGRTPLSPASPNKTMEGLVGGMVVAVAVAVIIGIMGGPAPFG---GDVWGGGFGASLLLGLVAALAAPIGDLAESQLKRDLGIKDMGTILPGHGGLLDRFDGLLFVLPATYYVGQLVDV 381
            +DV A+A+G+  GRTPLS ASPNKT+EGLVGGMVV V V VI+G++G PAP     G  W      ++++ +V A+AAPIGDLAES LKRDL IKDMG+ILPGHGG+LDRFD LLFVLPATYYV  + D+
Sbjct:  272 HDVSAMAVGRAAGRTPLSRASPNKTLEGLVGGMVVTVGVGVIMGLVGMPAPVAAEPGSAW-----VAIIMAVVVAVAAPIGDLAESMLKRDLNIKDMGSILPGHGGILDRFDALLFVLPATYYVAIMTDL 396          
BLAST of mRNA_M-pyrifera_M_contig116913.3500.1 vs. uniprot
Match: A0A2E8LHK0_9ACTN (Phosphatidate cytidylyltransferase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LHK0_9ACTN)

HSP 1 Score: 157 bits (397), Expect = 2.240e-45
Identity = 79/127 (62.20%), Postives = 99/127 (77.95%), Query Frame = 1
Query:    1 YDVGALAIGKVMGRTPLSPASPNKTMEGLVGGMVVAVAVAVIIGIMGGPAPFGGDVWGGGFGASLLLGLVAALAAPIGDLAESQLKRDLGIKDMGTILPGHGGLLDRFDGLLFVLPATYYVGQLVDV 381
            YDVG L +G++ GRTPL+  SPNKTMEGLVGGM+   AV V++  +G   PFG D   G   +  +LG+VAA+AAP+GDL ES +KRDLGIKDMG++LPGHGGLLDRFD LLFVLPATYY  +++D+
Sbjct:  144 YDVGGLFVGRLAGRTPLAAVSPNKTMEGLVGGMIACFAVCVLV--VGRITPFGQDP--GDLTSVAVLGIVAAIAAPLGDLCESMIKRDLGIKDMGSVLPGHGGLLDRFDALLFVLPATYYTARMLDL 266          
BLAST of mRNA_M-pyrifera_M_contig116913.3500.1 vs. uniprot
Match: A0A2E8BFH8_9ACTN (Phosphatidate cytidylyltransferase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8BFH8_9ACTN)

HSP 1 Score: 161 bits (408), Expect = 2.270e-45
Identity = 82/127 (64.57%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    1 YDVGALAIGKVMGRTPLSPASPNKTMEGLVGGMVVAVAVAVIIGIMGGPAPFGGDVWGGGFGASLLLGLVAALAAPIGDLAESQLKRDLGIKDMGTILPGHGGLLDRFDGLLFVLPATYYVGQLVDV 381
            YD G L +GK++GRTPL+  SPNKTMEGL+GGM +A AVAV++  +G  AP G     G  G++ +LG+VAALAAP+GDL ES +KRDLGIKDMGT+LPGHGG LDRFD LLFVLPATYY  +L+D+
Sbjct:  307 YDTGGLLVGKMVGRTPLAAVSPNKTMEGLIGGMGIAFAVAVLV--VGRIAPMGQAP--GDLGSAFVLGVVAALAAPLGDLCESMIKRDLGIKDMGTVLPGHGGFLDRFDALLFVLPATYYTARLLDL 429          
BLAST of mRNA_M-pyrifera_M_contig116913.3500.1 vs. uniprot
Match: A0A432JJN1_9ACTN (Phosphatidate cytidylyltransferase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A432JJN1_9ACTN)

HSP 1 Score: 161 bits (407), Expect = 3.320e-45
Identity = 83/127 (65.35%), Postives = 99/127 (77.95%), Query Frame = 1
Query:    1 YDVGALAIGKVMGRTPLSPASPNKTMEGLVGGMVVAVAVAVIIGIMGGPAPFGGDVWGGGFGASLLLGLVAALAAPIGDLAESQLKRDLGIKDMGTILPGHGGLLDRFDGLLFVLPATYYVGQLVDV 381
            YD G L +GK+ GRTPL+  SPNKTMEGL+GGM VA AVAV++  +G  AP G     G  G++ +LG+V ALAAP+GDL ES +KRDLGIKDMGTILPGHGG LDRFD LLFVLPATYY  +L+D+
Sbjct:  309 YDTGGLIVGKMAGRTPLAAVSPNKTMEGLIGGMAVAFAVAVLV--VGRIAPMGQAP--GDLGSAFVLGVVVALAAPLGDLCESMIKRDLGIKDMGTILPGHGGFLDRFDALLFVLPATYYTARLLDL 431          
BLAST of mRNA_M-pyrifera_M_contig116913.3500.1 vs. uniprot
Match: A0A7K2E9J1_9ACTN (Phosphatidate cytidylyltransferase n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2E9J1_9ACTN)

HSP 1 Score: 160 bits (404), Expect = 4.460e-45
Identity = 82/127 (64.57%), Postives = 100/127 (78.74%), Query Frame = 1
Query:    1 YDVGALAIGKVMGRTPLSPASPNKTMEGLVGGMVVAVAVAVIIGIMGGPAPFGGDVWGGGFGASLLLGLVAALAAPIGDLAESQLKRDLGIKDMGTILPGHGGLLDRFDGLLFVLPATYYVGQLVDV 381
            +DV A+AIG+  GRTPLS ASPNKT+EGL+GG VV VAV V++G++G PAP   D   G F  ++LL +V A+AAPIGDLAES LKRDL IKDMG++LPGHGG+LDRFD +LF LPATYYV  +  V
Sbjct:  273 HDVSAMAIGRAAGRTPLSRASPNKTLEGLLGGAVVTVAVGVVMGLVGMPAPIAEDP--GSFWIAVLLSVVVAVAAPIGDLAESMLKRDLDIKDMGSLLPGHGGILDRFDAMLFSLPATYYVALMTGV 397          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116913.3500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WUY5_9ACTN2.070e-5471.20Phosphatidate cytidylyltransferase n=1 Tax=Actinom... [more]
A0A358A5F1_9ACTN5.600e-4866.13Phosphatidate cytidylyltransferase n=8 Tax=Acidimi... [more]
A0A6B1B264_9ACTN5.800e-4764.00Phosphatidate cytidylyltransferase n=1 Tax=Acidimi... [more]
A0A3M2GIP3_ACTSX8.480e-4764.80Phosphatidate cytidylyltransferase (Fragment) n=1 ... [more]
A0A351XDI5_9ACTN1.220e-4662.99Phosphatidate cytidylyltransferase n=2 Tax=Acidimi... [more]
A0A6B1EDM2_9ACTN3.990e-4663.85Phosphatidate cytidylyltransferase n=2 Tax=Acidimi... [more]
A0A2E8LHK0_9ACTN2.240e-4562.20Phosphatidate cytidylyltransferase n=1 Tax=Acidimi... [more]
A0A2E8BFH8_9ACTN2.270e-4564.57Phosphatidate cytidylyltransferase n=1 Tax=Acidimi... [more]
A0A432JJN1_9ACTN3.320e-4565.35Phosphatidate cytidylyltransferase n=2 Tax=Actinob... [more]
A0A7K2E9J1_9ACTN4.460e-4564.57Phosphatidate cytidylyltransferase n=6 Tax=Acidimi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116913contigM-pyrifera_M_contig116913:161..556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score120.9
Seed ortholog evalue4.4e-25
Seed eggNOG ortholog1229780.BN381_330055
Preferred namecdsA
KEGG rclassRC00002
KEGG koko:K00981
KEGG ReactionR01799
KEGG Pathwayko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070
KEGG ModuleM00093
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055086,GO:0070567,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Belongs to the CDS family
EggNOG OGs2I7ZA@201174,3UWMF@52018,COG0575@1,COG0575@2
EC2.7.7.41
COG Functional cat.I
BiGG ReactioniLJ478.TM1397
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.2528036-CDS-M-pyrifera_M_contig116913:160..5561622815686.2528036-CDS-M-pyrifera_M_contig116913:160..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116913 161..556 -
1692277521.4814143-CDS-M-pyrifera_M_contig116913:160..5561692277521.4814143-CDS-M-pyrifera_M_contig116913:160..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116913 161..556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116913.3500.1prot_M-pyrifera_M_contig116913.3500.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116913 161..556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116913.3500.1

>prot_M-pyrifera_M_contig116913.3500.1 ID=prot_M-pyrifera_M_contig116913.3500.1|Name=mRNA_M-pyrifera_M_contig116913.3500.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
YDVGALAIGKVMGRTPLSPASPNKTMEGLVGGMVVAVAVAVIIGIMGGPA
PFGGDVWGGGFGASLLLGLVAALAAPIGDLAESQLKRDLGIKDMGTILPG
HGGLLDRFDGLLFVLPATYYVGQLVDVTSLA*
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mRNA from alignment at M-pyrifera_M_contig116913:161..556-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116913.3500.1 ID=mRNA_M-pyrifera_M_contig116913.3500.1|Name=mRNA_M-pyrifera_M_contig116913.3500.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig116913:161..556- (Macrocystis pyrifera P11B4 male)
TACGACGTCGGGGCGCTCGCCATCGGCAAGGTGATGGGCCGCACACCGCT CTCGCCCGCCAGCCCCAACAAGACCATGGAGGGCCTGGTCGGCGGCATGG TCGTCGCCGTCGCCGTGGCCGTGATCATCGGCATCATGGGCGGCCCGGCG CCGTTCGGCGGTGATGTGTGGGGCGGAGGCTTCGGCGCTTCCCTCCTGCT CGGACTGGTGGCGGCACTCGCCGCGCCGATCGGCGATCTCGCCGAGTCCC AGCTCAAGCGCGACCTCGGCATCAAGGACATGGGCACGATCCTGCCCGGC CACGGCGGTCTCCTCGACCGCTTCGACGGTCTGCTCTTCGTGCTGCCGGC CACGTACTACGTCGGTCAGCTGGTCGACGTCACGTCCCTGGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116913:161..556-

>mRNA_M-pyrifera_M_contig116913.3500.1 ID=mRNA_M-pyrifera_M_contig116913.3500.1|Name=mRNA_M-pyrifera_M_contig116913.3500.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig116913:161..556- (Macrocystis pyrifera P11B4 male)
TACGACGTCGGGGCGCTCGCCATCGGCAAGGTGATGGGCCGCACACCGCT
CTCGCCCGCCAGCCCCAACAAGACCATGGAGGGCCTGGTCGGCGGCATGG
TCGTCGCCGTCGCCGTGGCCGTGATCATCGGCATCATGGGCGGCCCGGCG
CCGTTCGGCGGTGATGTGTGGGGCGGAGGCTTCGGCGCTTCCCTCCTGCT
CGGACTGGTGGCGGCACTCGCCGCGCCGATCGGCGATCTCGCCGAGTCCC
AGCTCAAGCGCGACCTCGGCATCAAGGACATGGGCACGATCCTGCCCGGC
CACGGCGGTCTCCTCGACCGCTTCGACGGTCTGCTCTTCGTGCTGCCGGC
CACGTACTACGTCGGTCAGCTGGTCGACGTCACGTCCCTGGCCTGATACG
ACGTCGGGGCGCTCGCCATCGGCAAGGTGATGGGCCGCACACCGCTCTCG
CCCGCCAGCCCCAACAAGACCATGGAGGGCCTGGTCGGCGGCATGGTCGT
CGCCGTCGCCGTGGCCGTGATCATCGGCATCATGGGCGGCCCGGCGCCGT
TCGGCGGTGATGTGTGGGGCGGAGGCTTCGGCGCTTCCCTCCTGCTCGGA
CTGGTGGCGGCACTCGCCGCGCCGATCGGCGATCTCGCCGAGTCCCAGCT
CAAGCGCGACCTCGGCATCAAGGACATGGGCACGATCCTGCCCGGCCACG
GCGGTCTCCTCGACCGCTTCGACGGTCTGCTCTTCGTGCTGCCGGCCACG
TACTACGTCGGTCAGCTGGTCGACGTCACGTCCCTGGCCTGA
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