mRNA_M-pyrifera_M_contig116905.3498.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116905.3498.1
Unique NamemRNA_M-pyrifera_M_contig116905.3498.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116905.3498.1 vs. uniprot
Match: UPI0019E3DA30 (NTP transferase domain-containing protein n=1 Tax=Ectothiorhodospiraceae bacterium AqS1 TaxID=1725326 RepID=UPI0019E3DA30)

HSP 1 Score: 125 bits (314), Expect = 2.160e-35
Identity = 62/88 (70.45%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 MRAMILAAGRGERMGKLTAEQPKPLLEVAGKALIEHTIARLRAGGVRELVINLAYRGEQIRDRLGDGSRYGVAIAYSQEPAGALDTGG 264
            M+AMILAAGRGERMG+LT E+PKPLLEVAG +LIE+ I RL+  G R++V+NLA+ G QI++RLGDGSR+GV I YS EP GALDTGG
Sbjct:    1 MKAMILAAGRGERMGELTLEKPKPLLEVAGVSLIEYQIRRLQRAGFRDIVVNLAWLGGQIKERLGDGSRFGVRIDYSHEPEGALDTGG 88          
BLAST of mRNA_M-pyrifera_M_contig116905.3498.1 vs. uniprot
Match: A0A7C2JSK5_9GAMM (Nucleotidyltransferase family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C2JSK5_9GAMM)

HSP 1 Score: 129 bits (323), Expect = 2.840e-35
Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    1 MRAMILAAGRGERMGKLTAEQPKPLLEVAGKALIEHTIARLRAGGVRELVINLAYRGEQIRDRLGDGSRYGVAIAYSQEPAGALDTGGGIAAALDM 288
            MRAMILAAGRGERMG LTA QPKPLLE+ G+ LIEH + RL A G+ E+V+NL+YRG QIR  LGDGSRYG+ IAYS+E    L+T GGI  AL +
Sbjct:    1 MRAMILAAGRGERMGALTATQPKPLLEIGGRPLIEHHVVRLAASGIEEIVVNLSYRGNQIRALLGDGSRYGLTIAYSEEGEPPLETAGGIVRALPL 96          
BLAST of mRNA_M-pyrifera_M_contig116905.3498.1 vs. uniprot
Match: UPI0005C34416 (mannose-1-phosphate guanyltransferase-like n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI0005C34416)

HSP 1 Score: 128 bits (322), Expect = 9.540e-35
Identity = 65/93 (69.89%), Postives = 76/93 (81.72%), Query Frame = 1
Query:   10 MILAAGRGERMGKLTAEQPKPLLEVAGKALIEHTIARLRAGGVRELVINLAYRGEQIRDRLGDGSRYGVAIAYSQEPAGALDTGGGIAAALDM 288
            MILAAGRGERMG+LT E+PKPLLEVAG +LIEH I  L+  G R++V+NLA+ G QI++RLGDGSR+GV I YS EP GALDTGGGI  AL M
Sbjct:    1 MILAAGRGERMGELTLERPKPLLEVAGISLIEHQIRHLQRAGFRDIVVNLAWLGGQIKERLGDGSRFGVRIDYSHEPEGALDTGGGIRRALAM 93          
BLAST of mRNA_M-pyrifera_M_contig116905.3498.1 vs. uniprot
Match: A0A3B0YRP4_9ZZZZ (Nucleotidyl transferase possibly involved in threonylcarbamoyladenosine formation (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0YRP4_9ZZZZ)

HSP 1 Score: 122 bits (307), Expect = 1.820e-34
Identity = 67/91 (73.63%), Postives = 69/91 (75.82%), Query Frame = 1
Query:   10 MILAAGRGERMGKLTAEQPKPLLEVAGKALIEHTIARLRAGGVRELVINLAYRGEQIRDRLGDGSRYGVAIAYSQEPAGALDTGGGIAAAL 282
            MILAAGRGERM  LT   PKPLLEV GK LIEH I RLRA G+  LVIN AY GEQI  RLGDGS  GV IAYS EPAGAL+TGGGI  AL
Sbjct:    1 MILAAGRGERMRPLTDHTPKPLLEVGGKPLIEHHIVRLRAAGITRLVINHAYLGEQIIARLGDGSNLGVEIAYSPEPAGALETGGGIKHAL 91          
BLAST of mRNA_M-pyrifera_M_contig116905.3498.1 vs. uniprot
Match: A0A523NQ78_9PROT (Nucleotidyltransferase family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NQ78_9PROT)

HSP 1 Score: 126 bits (316), Expect = 3.760e-34
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 1
Query:    1 MRAMILAAGRGERMGKLTAEQPKPLLEVAGKALIEHTIARLRAGGVRELVINLAYRGEQIRDRLGDGSRYGVAIAYSQEPAGALDTGGGIAAALDM 288
            MRA+ILAAGRG+RMG LTAE+PKPL+ +AGKA+I H I RLRA G+ E+VINLAYRG+QIR  L +G  YGV IAYS EP  ALDTGGGI  AL +
Sbjct:    1 MRALILAAGRGKRMGHLTAERPKPLITLAGKAMIVHHIERLRAVGITEIVINLAYRGDQIRALLDNGQAYGVTIAYSAEPDLALDTGGGIYRALHL 96          
BLAST of mRNA_M-pyrifera_M_contig116905.3498.1 vs. uniprot
Match: A0A3N5P8E6_9GAMM (Nucleotidyltransferase family protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5P8E6_9GAMM)

HSP 1 Score: 124 bits (310), Expect = 2.520e-33
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    1 MRAMILAAGRGERMGKLTAEQPKPLLEVAGKALIEHTIARLRAGGVRELVINLAYRGEQIRDRLGDGSRYGVAIAYSQEPAGALDTGGGIAAALDM 288
            MRAMILAAGRGERMG LTA QPKPLL +  ++LIE  + RL A G+ ELVINL+YRG +IR RLGDG R+GV+IAYS+E    L+TGGGI  AL +
Sbjct:    1 MRAMILAAGRGERMGALTAMQPKPLLTIGDRSLIERHVVRLAASGIDELVINLSYRGSEIRKRLGDGRRFGVSIAYSEEGEPPLETGGGIVQALPL 96          
BLAST of mRNA_M-pyrifera_M_contig116905.3498.1 vs. uniprot
Match: W0DM14_9GAMM (Mannose-1-phosphate guanylyltransferase n=1 Tax=Thioalkalivibrio paradoxus ARh 1 TaxID=713585 RepID=W0DM14_9GAMM)

HSP 1 Score: 124 bits (311), Expect = 2.880e-33
Identity = 64/95 (67.37%), Postives = 74/95 (77.89%), Query Frame = 1
Query:    1 MRAMILAAGRGERMGKLTAEQPKPLLEVAGKALIEHTIARLRAGGVRELVINLAYRGEQIRDRLGDGSRYGVAIAYSQEPAGALDTGGGIAAALD 285
            MRAMILAAGRGERM  LT   PKPLLE  G ALIEH I RL A G +E+VIN+A+ GE+I +R+GDGSR+GV I YS+EPAGAL+T GGI   LD
Sbjct:    1 MRAMILAAGRGERMRPLTDHTPKPLLEAGGAALIEHGIRRLHAAGYQEIVINVAHLGERIVERIGDGSRFGVGIRYSREPAGALETAGGIREVLD 95          
BLAST of mRNA_M-pyrifera_M_contig116905.3498.1 vs. uniprot
Match: A0A3D5DFE6_9GAMM (Mannose-1-phosphate guanylyltransferase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DFE6_9GAMM)

HSP 1 Score: 123 bits (309), Expect = 4.960e-33
Identity = 64/96 (66.67%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    1 MRAMILAAGRGERMGKLTAEQPKPLLEVAGKALIEHTIARLRAGGVRELVINLAYRGEQIRDRLGDGSRYGVAIAYSQEPAGALDTGGGIAAALDM 288
            MRAMILAAGRGERMG+LT + PKPL+ +AGKALI H I RLR  G  +LVIN++YR EQIR  LG G + GV I YS EP GALDTGGGIA A  +
Sbjct:    1 MRAMILAAGRGERMGQLTRDLPKPLIPIAGKALIVHQIERLRDAGFTDLVINISYRLEQIRAHLGSGKKLGVKIEYSTEPEGALDTGGGIATATTL 96          
BLAST of mRNA_M-pyrifera_M_contig116905.3498.1 vs. uniprot
Match: A0A7Y1W1A0_9GAMM (Nucleotidyltransferase family protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y1W1A0_9GAMM)

HSP 1 Score: 122 bits (307), Expect = 8.520e-33
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 1
Query:    1 MRAMILAAGRGERMGKLTAEQPKPLLEVAGKALIEHTIARLRAGGVRELVINLAYRGEQIRDRLGDGSRYGVAIAYSQEPAGALDTGGGIAAALDM 288
            MRAMILAAGRGER+  LT   PKPLLEVAG+ L+ H + RL   G R +VINLA+ G+QIR+R+GDG+R+G+ + YSQEP GAL+TGGGIA AL M
Sbjct:    1 MRAMILAAGRGERLRPLTDHTPKPLLEVAGQPLLFHHLQRLARAGFRHVVINLAHLGDQIRERVGDGARWGLQVHYSQEPEGALETGGGIAQALPM 96          
BLAST of mRNA_M-pyrifera_M_contig116905.3498.1 vs. uniprot
Match: A0A2G6EVC5_9GAMM (Mannose-1-phosphate guanylyltransferase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6EVC5_9GAMM)

HSP 1 Score: 122 bits (305), Expect = 1.350e-32
Identity = 63/96 (65.62%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 MRAMILAAGRGERMGKLTAEQPKPLLEVAGKALIEHTIARLRAGGVRELVINLAYRGEQIRDRLGDGSRYGVAIAYSQEPAGALDTGGGIAAALDM 288
            M+AMILAAGRG+RMGKLT  +PKPLL+V  K LIE  I RL+  G  ELVIN+ Y GEQIR  LGDGSRYGV IAYS EP   L+TGGG+  AL +
Sbjct:    1 MKAMILAAGRGKRMGKLTENRPKPLLKVGAKTLIEWQIKRLQDNGFEELVINVGYLGEQIRQYLGDGSRYGVKIAYSVEPQAGLETGGGVLQALPL 96          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116905.3498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019E3DA302.160e-3570.45NTP transferase domain-containing protein n=1 Tax=... [more]
A0A7C2JSK5_9GAMM2.840e-3566.67Nucleotidyltransferase family protein n=1 Tax=Gamm... [more]
UPI0005C344169.540e-3569.89mannose-1-phosphate guanyltransferase-like n=1 Tax... [more]
A0A3B0YRP4_9ZZZZ1.820e-3473.63Nucleotidyl transferase possibly involved in threo... [more]
A0A523NQ78_9PROT3.760e-3468.75Nucleotidyltransferase family protein n=1 Tax=Prot... [more]
A0A3N5P8E6_9GAMM2.520e-3365.63Nucleotidyltransferase family protein n=1 Tax=Xant... [more]
W0DM14_9GAMM2.880e-3367.37Mannose-1-phosphate guanylyltransferase n=1 Tax=Th... [more]
A0A3D5DFE6_9GAMM4.960e-3366.67Mannose-1-phosphate guanylyltransferase n=1 Tax=Ga... [more]
A0A7Y1W1A0_9GAMM8.520e-3364.58Nucleotidyltransferase family protein n=1 Tax=Xant... [more]
A0A2G6EVC5_9GAMM1.350e-3265.63Mannose-1-phosphate guanylyltransferase n=1 Tax=Ga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116905contigM-pyrifera_M_contig116905:242..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score125.2
Seed ortholog evalue1.8e-26
Seed eggNOG ortholog713587.THITH_15760
Preferred namermlA
KEGG rclassRC00002
KEGG koko:K00966,ko:K00973,ko:K00992
KEGG ReactionR00885,R02328,R11025
KEGG Pathwayko00051,ko00520,ko00521,ko00523,ko00525,ko01100,ko01110,ko01130,map00051,map00520,map00521,map00523,map00525,map01100,map01110,map01130
KEGG ModuleM00114,M00361,M00362,M00793
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000270,GO:0000287,GO:0001882,GO:0001884,GO:0002134,GO:0003674,GO:0003824,GO:0005488,GO:0006022,GO:0006040,GO:0006082,GO:0006807,GO:0008150,GO:0008152,GO:0009254,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0019103,GO:0019752,GO:0030203,GO:0032549,GO:0032551,GO:0032553,GO:0032557,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0044237,GO:0044281,GO:0046872,GO:0070569,GO:0071704,GO:0097159,GO:0097172,GO:0097367,GO:1901135,GO:1901265,GO:1901363,GO:1901564
EggNOG free text desc.PFAM Nucleotidyl transferase
EggNOG OGs1R9ZD@1224,1S23A@1236,1WWYC@135613,COG1208@1,COG1208@2
EC2.7.7.13,2.7.7.24,2.7.7.99
COG Functional cat.JM
Best tax levelChromatiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size309
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.1753223-CDS-M-pyrifera_M_contig116905:241..5501622815686.1753223-CDS-M-pyrifera_M_contig116905:241..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116905 242..550 +
1692277521.4534497-CDS-M-pyrifera_M_contig116905:241..5501692277521.4534497-CDS-M-pyrifera_M_contig116905:241..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116905 242..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116905.3498.1prot_M-pyrifera_M_contig116905.3498.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116905 242..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116905.3498.1

>prot_M-pyrifera_M_contig116905.3498.1 ID=prot_M-pyrifera_M_contig116905.3498.1|Name=mRNA_M-pyrifera_M_contig116905.3498.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MRAMILAAGRGERMGKLTAEQPKPLLEVAGKALIEHTIARLRAGGVRELV
INLAYRGEQIRDRLGDGSRYGVAIAYSQEPAGALDTGGGIAAALDMPDRR
RL*
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mRNA from alignment at M-pyrifera_M_contig116905:242..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116905.3498.1 ID=mRNA_M-pyrifera_M_contig116905.3498.1|Name=mRNA_M-pyrifera_M_contig116905.3498.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig116905:242..550+ (Macrocystis pyrifera P11B4 male)
ATGCGGGCAATGATACTCGCCGCGGGACGCGGCGAACGCATGGGCAAGCT CACCGCGGAGCAACCAAAACCGTTACTCGAGGTTGCGGGTAAAGCCCTGA TTGAGCACACGATAGCGCGCCTTCGCGCAGGCGGCGTACGCGAACTGGTG ATCAATCTTGCATACCGCGGCGAACAGATCCGGGATCGCCTCGGCGATGG CTCGCGCTACGGCGTCGCGATCGCCTATTCGCAGGAGCCCGCCGGCGCGC TCGATACCGGGGGCGGAATTGCCGCGGCGCTCGATATGCCGGACCGGCGC CGTTTATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116905:242..550+

>mRNA_M-pyrifera_M_contig116905.3498.1 ID=mRNA_M-pyrifera_M_contig116905.3498.1|Name=mRNA_M-pyrifera_M_contig116905.3498.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig116905:242..550+ (Macrocystis pyrifera P11B4 male)
ATGCGGGCAATGATACTCGCCGCGGGACGCGGCGAACGCATGGGCAAGCT
CACCGCGGAGCAACCAAAACCGTTACTCGAGGTTGCGGGTAAAGCCCTGA
TTGAGCACACGATAGCGCGCCTTCGCGCAGGCGGCGTACGCGAACTGGTG
ATCAATCTTGCATACCGCGGCGAACAGATCCGGGATCGCCTCGGCGATGG
CTCGCGCTACGGCGTCGCGATCGCCTATTCGCAGGAGCCCGCCGGCGCGC
TCGATACCGGGGGCGGAATTGCCGCGGCGCTCGATATGCCGGACCGGCGC
CGTTTATAGATGCGGGCAATGATACTCGCCGCGGGACGCGGCGAACGCAT
GGGCAAGCTCACCGCGGAGCAACCAAAACCGTTACTCGAGGTTGCGGGTA
AAGCCCTGATTGAGCACACGATAGCGCGCCTTCGCGCAGGCGGCGTACGC
GAACTGGTGATCAATCTTGCATACCGCGGCGAACAGATCCGGGATCGCCT
CGGCGATGGCTCGCGCTACGGCGTCGCGATCGCCTATTCGCAGGAGCCCG
CCGGCGCGCTCGATACCGGGGGCGGAATTGCCGCGGCGCTCGATATGCCG
GACCGGCGCCGTTTATAG
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