mRNA_M-pyrifera_M_contig116889.3494.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116889.3494.1
Unique NamemRNA_M-pyrifera_M_contig116889.3494.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116889.3494.1 vs. uniprot
Match: UPI00077A1A88 (pleckstrin homology domain-containing family H member 1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A1A88)

HSP 1 Score: 51.2 bits (121), Expect = 1.210e-6
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 KNWRRRWFVLLGTDLYYYHSEKATD--PLGLVPLGRDSVRVVENDAQDSI-LCTRKHCFLIT 177
            KNWR+RWFVL G +LYYY SE  T+  PLG +PL   + R+   D   +  + T K  F +T
Sbjct:   31 KNWRKRWFVLSGGNLYYYKSENETNRKPLGQIPLD-GTCRIARTDGALTFEVATPKRTFYLT 91
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BLAST of mRNA_M-pyrifera_M_contig116889.3494.1 vs. uniprot
Match: A0A060XW59_ONCMY (PH domain-containing protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A060XW59_ONCMY)

HSP 1 Score: 49.3 bits (116), Expect = 7.500e-6
Identity = 20/49 (40.82%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:    1 KNWRRRWFVLLGTDLYYYHSEKATDPLGLVPLGRDSVRVVENDAQDSIL 147
            K W+RRWF+L  + LYY+      DP+G++PL   SVR +E+  +   L
Sbjct:    7 KTWKRRWFILTDSCLYYFEYTTDKDPIGIIPLENLSVREIEDSTKQYCL 55
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BLAST of mRNA_M-pyrifera_M_contig116889.3494.1 vs. uniprot
Match: UPI001CF2AA6C (pleckstrin homology domain-containing family H member 1-like isoform X1 n=4 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF2AA6C)

HSP 1 Score: 50.1 bits (118), Expect = 1.530e-5
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 KNWRRRWFVLLGTDLYYYHSEKATD--PLGLVPLGRDSVRVVENDAQDSI-LCTRKHCFLIT 177
            KNW++RWFVL G +LYYY SE  T+  PLG +PL   + R+   D   +  + T K  F +T
Sbjct:  639 KNWKKRWFVLSGGNLYYYKSENETNRKPLGQIPLD-GTCRIARTDGALTFEVATPKRTFYLT 699
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BLAST of mRNA_M-pyrifera_M_contig116889.3494.1 vs. uniprot
Match: UPI001F0758ED (cytohesin-2 isoform X1 n=3 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F0758ED)

HSP 1 Score: 49.3 bits (116), Expect = 2.790e-5
Identity = 19/49 (38.78%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:    1 KNWRRRWFVLLGTDLYYYHSEKATDPLGLVPLGRDSVRVVENDAQDSIL 147
            K W+RRWF+L  + LYY+H     DP+G++PL    VR +++  +   L
Sbjct:  285 KTWKRRWFILTDSCLYYFHYTTDKDPIGIIPLENLCVREIQDSGKQYCL 333
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BLAST of mRNA_M-pyrifera_M_contig116889.3494.1 vs. uniprot
Match: UPI00159CB74C (cytohesin-3 isoform X1 n=3 Tax=Hippoglossus TaxID=8266 RepID=UPI00159CB74C)

HSP 1 Score: 48.5 bits (114), Expect = 5.240e-5
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    1 KNWRRRWFVLLGTDLYYYHSEKATDPLGLVPLGRDSVR 114
            K WRRRWF+L  + LYY+     TDP+G++PL   S+R
Sbjct:  312 KTWRRRWFILTDSCLYYFKYTTDTDPIGIIPLENLSIR 349
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116889.3494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI00077A1A881.210e-645.16pleckstrin homology domain-containing family H mem... [more]
A0A060XW59_ONCMY7.500e-640.82PH domain-containing protein n=1 Tax=Oncorhynchus ... [more]
UPI001CF2AA6C1.530e-543.55pleckstrin homology domain-containing family H mem... [more]
UPI001F0758ED2.790e-538.78cytohesin-2 isoform X1 n=3 Tax=Hypomesus transpaci... [more]
UPI00159CB74C5.240e-550.00cytohesin-3 isoform X1 n=3 Tax=Hippoglossus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116889contigM-pyrifera_M_contig116889:41..217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815685.645697-CDS-M-pyrifera_M_contig116889:40..2171622815685.645697-CDS-M-pyrifera_M_contig116889:40..217Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116889 41..217 -
1692277521.1110756-CDS-M-pyrifera_M_contig116889:40..2171692277521.1110756-CDS-M-pyrifera_M_contig116889:40..217Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116889 41..217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116889.3494.1prot_M-pyrifera_M_contig116889.3494.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116889 41..217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116889.3494.1

>prot_M-pyrifera_M_contig116889.3494.1 ID=prot_M-pyrifera_M_contig116889.3494.1|Name=mRNA_M-pyrifera_M_contig116889.3494.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
KNWRRRWFVLLGTDLYYYHSEKATDPLGLVPLGRDSVRVVENDAQDSILC
TRKHCFLIT
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mRNA from alignment at M-pyrifera_M_contig116889:41..217-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116889.3494.1 ID=mRNA_M-pyrifera_M_contig116889.3494.1|Name=mRNA_M-pyrifera_M_contig116889.3494.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig116889:41..217- (Macrocystis pyrifera P11B4 male)
AAGAACTGGAGGAGGCGCTGGTTCGTTCTTCTGGGCACTGATCTCTACTA
CTATCACAGCGAGAAGGCCACCGATCCTCTGGGCCTCGTGCCGCTTGGAA
GAGACAGCGTGAGGGTCGTCGAGAACGACGCCCAGGACTCCATTCTCTGC
ACGAGAAAGCACTGCTTCCTCATCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116889:41..217-

>mRNA_M-pyrifera_M_contig116889.3494.1 ID=mRNA_M-pyrifera_M_contig116889.3494.1|Name=mRNA_M-pyrifera_M_contig116889.3494.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig116889:41..217- (Macrocystis pyrifera P11B4 male)
AAGAACTGGAGGAGGCGCTGGTTCGTTCTTCTGGGCACTGATCTCTACTA
CTATCACAGCGAGAAGGCCACCGATCCTCTGGGCCTCGTGCCGCTTGGAA
GAGACAGCGTGAGGGTCGTCGAGAACGACGCCCAGGACTCCATTCTCTGC
ACGAGAAAGCACTGCTTCCTCATCACCAAGAACTGGAGGAGGCGCTGGTT
CGTTCTTCTGGGCACTGATCTCTACTACTATCACAGCGAGAAGGCCACCG
ATCCTCTGGGCCTCGTGCCGCTTGGAAGAGACAGCGTGAGGGTCGTCGAG
AACGACGCCCAGGACTCCATTCTCTGCACGAGAAAGCACTGCTTCCTCAT
CACC
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