mRNA_M-pyrifera_M_contig116883.3492.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116883.3492.1
Unique NamemRNA_M-pyrifera_M_contig116883.3492.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig116883.3492.1 vs. uniprot
Match: A0A1X2GVS5_9FUNG (Uncharacterized protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GVS5_9FUNG)

HSP 1 Score: 200 bits (508), Expect = 5.970e-57
Identity = 90/138 (65.22%), Postives = 108/138 (78.26%), Query Frame = 1 
Query:    1 QIDLDIPRCHQYHPLLSSKEGHKRLRNVLKAWVAANPGWTYWQGLDSLLAPFVTLNFNDEARAYACLMEVVHKYLHNFFLKDNATYLQGHLLIFRQLLSFHDPQLAVHLHELGFNPELFAIPWFLTIFTRTPDLSPTY 414
            QID+D+PRCHQYH LL+S  GH +LR +LKAWVAANPG  YWQGLDSL APF+TLNFNDEA A+ACL   + ++L NFFL DNA  LQ +L IFR L+S+HDPQL+ HL  +GF P+L+AIPWFLT+FT    L  TY
Sbjct:  626 QIDVDVPRCHQYHDLLASSVGHGKLRRLLKAWVAANPGLVYWQGLDSLCAPFLTLNFNDEALAFACLQRFIPRFLKNFFLSDNAPVLQEYLAIFRHLISYHDPQLSSHLETIGFLPDLYAIPWFLTLFTHVFPLDKTY 763
[Close]
BLAST of mRNA_M-pyrifera_M_contig116883.3492.1 vs. uniprot
Match: A0A8J6LK86_TENMO (Rab-GAP TBC domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LK86_TENMO)

HSP 1 Score: 188 bits (478), Expect = 1.670e-56
Identity = 82/130 (63.08%), Postives = 105/130 (80.77%), Query Frame = 1 
Query:    1 QIDLDIPRCHQYHPLLSSKEGHKRLRNVLKAWVAANPGWTYWQGLDSLLAPFVTLNFNDEARAYACLMEVVHKYLHNFFLKDNATYLQGHLLIFRQLLSFHDPQLAVHLHELGFNPELFAIPWFLTIFTR 390
            QI++DIPRCHQY+ LLSS EGH++L+ +LKAWV  N  + YWQGLDSL APF+ LNFN+EA+A+ACL   + KYLH FFLKDN+  +Q +L  F QL++FHDP+LA HLH++ F PELFAIPWFLT+F+ 
Sbjct:   88 QIEVDIPRCHQYNELLSSTEGHRKLKRILKAWVYQNSNYVYWQGLDSLTAPFLYLNFNNEAKAFACLSAFIPKYLHKFFLKDNSMVIQEYLAKFSQLIAFHDPKLANHLHDINFYPELFAIPWFLTVFSH 217
[Close]
BLAST of mRNA_M-pyrifera_M_contig116883.3492.1 vs. uniprot
Match: UPI001D093035 (TBC domain-containing protein kinase-like protein n=1 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D093035)

HSP 1 Score: 195 bits (496), Expect = 1.040e-55
Identity = 86/130 (66.15%), Postives = 106/130 (81.54%), Query Frame = 1 
Query:    1 QIDLDIPRCHQYHPLLSSKEGHKRLRNVLKAWVAANPGWTYWQGLDSLLAPFVTLNFNDEARAYACLMEVVHKYLHNFFLKDNATYLQGHLLIFRQLLSFHDPQLAVHLHELGFNPELFAIPWFLTIFTR 390
            QI++DIPRCHQY+ LLSS EGH++L+ +LKAWV  NP + YWQGLDSL APF+ LNFN+EARAYACL E + KYLH FFLKDN+  +Q +L  F Q+++FHDPQLA HLH + F PELFAIPWFLT+F+ 
Sbjct:  471 QIEVDIPRCHQYNELLSSGEGHRKLKRILKAWVVRNPEYVYWQGLDSLTAPFLYLNFNNEARAYACLSEFIPKYLHKFFLKDNSAIIQEYLAKFSQIIAFHDPQLANHLHSISFIPELFAIPWFLTMFSH 600
[Close]
BLAST of mRNA_M-pyrifera_M_contig116883.3492.1 vs. uniprot
Match: UPI0015FCA9BD (LOW QUALITY PROTEIN: TBC domain-containing protein kinase-like protein n=1 Tax=Oncorhynchus keta TaxID=8018 RepID=UPI0015FCA9BD)

HSP 1 Score: 186 bits (471), Expect = 1.370e-55
Identity = 80/130 (61.54%), Postives = 106/130 (81.54%), Query Frame = 1 
Query:    1 QIDLDIPRCHQYHPLLSSKEGHKRLRNVLKAWVAANPGWTYWQGLDSLLAPFVTLNFNDEARAYACLMEVVHKYLHNFFLKDNATYLQGHLLIFRQLLSFHDPQLAVHLHELGFNPELFAIPWFLTIFTR 390
            QI++DIPRCHQY  LLSS +GH++ R VLKAWV ++P   YWQGLDSL APF+ LNFN+EA AYAC+   + KYL+NFFLKDN+  +Q +L +F Q+++FHDP+L+ HL+E+GF P+L+AIPWFLT+FT 
Sbjct:   97 QIEVDIPRCHQYDELLSSPQGHRKFRRVLKAWVVSHPDLVYWQGLDSLCAPFLWLNFNNEALAYACMSAFIPKYLYNFFLKDNSHVIQEYLTVFSQMIAFHDPELSNHLNEIGFIPDLYAIPWFLTMFTH 226
[Close]
BLAST of mRNA_M-pyrifera_M_contig116883.3492.1 vs. uniprot
Match: A0A1B6CX37_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CX37_9HEMI)

HSP 1 Score: 189 bits (480), Expect = 2.990e-55
Identity = 83/130 (63.85%), Postives = 107/130 (82.31%), Query Frame = 1 
Query:    1 QIDLDIPRCHQYHPLLSSKEGHKRLRNVLKAWVAANPGWTYWQGLDSLLAPFVTLNFNDEARAYACLMEVVHKYLHNFFLKDNATYLQGHLLIFRQLLSFHDPQLAVHLHELGFNPELFAIPWFLTIFTR 390
            QI++DIPRCHQY+ LLSS+EGH++L+ VLKAWV ++P + YWQGLDSL APF+ LNFN EA+AYACL E + +YLHNFFLKDN+  ++ +L+ F  L++FHDP LA HL E+ F PELFAIPWFLT+F+ 
Sbjct:  307 QIEVDIPRCHQYNELLSSREGHRKLKRVLKAWVVSHPQYVYWQGLDSLCAPFLFLNFNCEAKAYACLSEFIPRYLHNFFLKDNSAVIREYLIKFSHLITFHDPVLANHLREISFIPELFAIPWFLTMFSH 436
[Close]
BLAST of mRNA_M-pyrifera_M_contig116883.3492.1 vs. uniprot
Match: A0A6S7GE48_PARCT (TBC domain-containing kinase (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GE48_PARCT)

HSP 1 Score: 186 bits (471), Expect = 1.190e-54
Identity = 81/138 (58.70%), Postives = 105/138 (76.09%), Query Frame = 1 
Query:    1 QIDLDIPRCHQYHPLLSSKEGHKRLRNVLKAWVAANPGWTYWQGLDSLLAPFVTLNFNDEARAYACLMEVVHKYLHNFFLKDNATYLQGHLLIFRQLLSFHDPQLAVHLHELGFNPELFAIPWFLTIFTRTPDLSPTY 414
            QI++DIPRCHQYH LL+S   H + + +LKAWV ++PG  YWQGLDSL APF++LNFNDEA A++CL   + KYL+NFFLKDN+  +Q +L +F  L++FHDP+L +HL E GF PEL+AIPWFLT+FT    L   Y
Sbjct:   54 QIEVDIPRCHQYHQLLASPTAHGKFKRLLKAWVVSHPGLVYWQGLDSLCAPFLSLNFNDEALAHSCLKSFIPKYLYNFFLKDNSPIIQEYLAVFCHLIAFHDPELFIHLDETGFQPELYAIPWFLTMFTHVFPLHKIY 191
[Close]
BLAST of mRNA_M-pyrifera_M_contig116883.3492.1 vs. uniprot
Match: A0A672UE58_STRHB (TBC1 domain containing kinase n=5 Tax=Neognathae TaxID=8825 RepID=A0A672UE58_STRHB)

HSP 1 Score: 186 bits (471), Expect = 1.330e-54
Identity = 81/130 (62.31%), Postives = 105/130 (80.77%), Query Frame = 1 
Query:    1 QIDLDIPRCHQYHPLLSSKEGHKRLRNVLKAWVAANPGWTYWQGLDSLLAPFVTLNFNDEARAYACLMEVVHKYLHNFFLKDNATYLQGHLLIFRQLLSFHDPQLAVHLHELGFNPELFAIPWFLTIFTR 390
            QI++DIPRCHQY  LLSS EGH + R VLKAWV ++P   YWQGLDSL APF+ LNFN+EA AYAC+   + KYL+NFFLKDN+  +Q +L +F Q+++FHDP+L+ HL+E+GF P+L+AIPWFLT+FT 
Sbjct:   44 QIEVDIPRCHQYDELLSSPEGHAKFRRVLKAWVVSHPDLVYWQGLDSLCAPFLYLNFNNEALAYACMSAFIPKYLYNFFLKDNSHVIQEYLTVFSQMIAFHDPELSNHLNEIGFIPDLYAIPWFLTMFTH 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig116883.3492.1 vs. uniprot
Match: A0A4W3HJD3_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3HJD3_CALMI)

HSP 1 Score: 185 bits (470), Expect = 1.370e-54
Identity = 81/130 (62.31%), Postives = 105/130 (80.77%), Query Frame = 1 
Query:    1 QIDLDIPRCHQYHPLLSSKEGHKRLRNVLKAWVAANPGWTYWQGLDSLLAPFVTLNFNDEARAYACLMEVVHKYLHNFFLKDNATYLQGHLLIFRQLLSFHDPQLAVHLHELGFNPELFAIPWFLTIFTR 390
            QI++DIPRCHQY  LLSS EGH + R VLKAWV ++P   YWQGLDSL APF+ LNFN+EA AYAC+   + KYL+NFFLKDN+  +Q +L +F Q+++FHDP+L+ HL+E+GF P+L+AIPWFLT+FT 
Sbjct:   31 QIEVDIPRCHQYDELLSSPEGHGKFRRVLKAWVVSHPDLVYWQGLDSLCAPFLYLNFNNEALAYACMSAFIPKYLYNFFLKDNSHVIQEYLTVFSQMIAFHDPELSNHLNEIGFIPDLYAIPWFLTMFTH 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig116883.3492.1 vs. uniprot
Match: A0A8B9TTJ3_ANAPL (TBC1 domain containing kinase n=2 Tax=Galloanserae TaxID=1549675 RepID=A0A8B9TTJ3_ANAPL)

HSP 1 Score: 184 bits (468), Expect = 2.050e-54
Identity = 80/130 (61.54%), Postives = 105/130 (80.77%), Query Frame = 1 
Query:    1 QIDLDIPRCHQYHPLLSSKEGHKRLRNVLKAWVAANPGWTYWQGLDSLLAPFVTLNFNDEARAYACLMEVVHKYLHNFFLKDNATYLQGHLLIFRQLLSFHDPQLAVHLHELGFNPELFAIPWFLTIFTR 390
            QI++DIPRCHQY  LLSS EGH + R VLKAWV ++P   YWQGLDSL APF+ LNFN+EA AYAC+   + KYL+NFFLKDN+  +Q +L +F Q+++FHDP+L+ HL+++GF P+L+AIPWFLT+FT 
Sbjct:   30 QIEVDIPRCHQYDELLSSPEGHAKFRRVLKAWVVSHPDLVYWQGLDSLCAPFLYLNFNNEALAYACMSAFIPKYLYNFFLKDNSHVIQEYLTVFSQMIAFHDPELSNHLNDIGFIPDLYAIPWFLTMFTH 159
[Close]
BLAST of mRNA_M-pyrifera_M_contig116883.3492.1 vs. uniprot
Match: A0A670YPH4_PSETE (TBC1 domain containing kinase n=2 Tax=Sauria TaxID=32561 RepID=A0A670YPH4_PSETE)

HSP 1 Score: 184 bits (468), Expect = 2.970e-54
Identity = 80/130 (61.54%), Postives = 105/130 (80.77%), Query Frame = 1 
Query:    1 QIDLDIPRCHQYHPLLSSKEGHKRLRNVLKAWVAANPGWTYWQGLDSLLAPFVTLNFNDEARAYACLMEVVHKYLHNFFLKDNATYLQGHLLIFRQLLSFHDPQLAVHLHELGFNPELFAIPWFLTIFTR 390
            QI++DIPRCHQY  LLSS EGH + R VLKAWV ++P   YWQGLDSL APF+ LNFN+EA AY+C+   + KYL+NFFLKDN+  +Q +L +F Q+++FHDP+L+ HL+E+GF P+L+AIPWFLT+FT 
Sbjct:   34 QIEVDIPRCHQYDELLSSPEGHAKFRRVLKAWVVSHPDLVYWQGLDSLCAPFLYLNFNNEALAYSCMSAFIPKYLYNFFLKDNSHVIQEYLTVFSQMIAFHDPELSNHLNEIGFIPDLYAIPWFLTMFTH 163
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116883.3492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X2GVS5_9FUNG5.970e-5765.22Uncharacterized protein n=1 Tax=Hesseltinella vesi... [more]
A0A8J6LK86_TENMO1.670e-5663.08Rab-GAP TBC domain-containing protein n=1 Tax=Tene... [more]
UPI001D0930351.040e-5566.15TBC domain-containing protein kinase-like protein ... [more]
UPI0015FCA9BD1.370e-5561.54LOW QUALITY PROTEIN: TBC domain-containing protein... [more]
A0A1B6CX37_9HEMI2.990e-5563.85Uncharacterized protein (Fragment) n=2 Tax=Clastop... [more]
A0A6S7GE48_PARCT1.190e-5458.70TBC domain-containing kinase (Fragment) n=1 Tax=Pa... [more]
A0A672UE58_STRHB1.330e-5462.31TBC1 domain containing kinase n=5 Tax=Neognathae T... [more]
A0A4W3HJD3_CALMI1.370e-5462.31Uncharacterized protein n=1 Tax=Callorhinchus mili... [more]
A0A8B9TTJ3_ANAPL2.050e-5461.54TBC1 domain containing kinase n=2 Tax=Galloanserae... [more]
A0A670YPH4_PSETE2.970e-5461.54TBC1 domain containing kinase n=2 Tax=Sauria TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116883contigM-pyrifera_M_contig116883:6..419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score189.1
Seed ortholog evalue1.4e-45
Seed eggNOG ortholog36080.S2JKZ2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs.
EggNOG OGs1GS0E@112252,38BEV@33154,3NXSZ@4751,KOG1093@1,KOG1093@2759
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-12_001920.1
COG Functional cat.T
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815685.5865643-CDS-M-pyrifera_M_contig116883:5..4191622815685.5865643-CDS-M-pyrifera_M_contig116883:5..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116883 6..419 +
1692277521.086946-CDS-M-pyrifera_M_contig116883:5..4191692277521.086946-CDS-M-pyrifera_M_contig116883:5..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116883 6..419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116883.3492.1prot_M-pyrifera_M_contig116883.3492.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116883 6..419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116883.3492.1

>prot_M-pyrifera_M_contig116883.3492.1 ID=prot_M-pyrifera_M_contig116883.3492.1|Name=mRNA_M-pyrifera_M_contig116883.3492.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
QIDLDIPRCHQYHPLLSSKEGHKRLRNVLKAWVAANPGWTYWQGLDSLLA
PFVTLNFNDEARAYACLMEVVHKYLHNFFLKDNATYLQGHLLIFRQLLSF
HDPQLAVHLHELGFNPELFAIPWFLTIFTRTPDLSPTY
back to top

mRNA from alignment at M-pyrifera_M_contig116883:6..419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116883.3492.1 ID=mRNA_M-pyrifera_M_contig116883.3492.1|Name=mRNA_M-pyrifera_M_contig116883.3492.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig116883:6..419+ (Macrocystis pyrifera P11B4 male)
CAGATTGACCTGGACATTCCACGCTGCCACCAGTACCACCCTCTGCTCTC
CTCCAAGGAGGGCCACAAGCGGCTGCGTAACGTGCTGAAGGCCTGGGTTG
CCGCCAACCCAGGCTGGACGTATTGGCAGGGCCTGGACTCCCTCCTCGCT
CCCTTCGTTACGCTGAACTTCAATGACGAGGCGCGAGCCTACGCCTGCCT
CATGGAAGTGGTGCACAAGTACCTCCACAACTTCTTCCTCAAGGACAACG
CCACCTATCTGCAGGGCCACCTCCTCATCTTCCGCCAGCTGCTCAGCTTC
CACGACCCCCAGTTGGCTGTCCACCTGCACGAGCTGGGCTTCAACCCCGA
GCTCTTCGCCATCCCCTGGTTCCTCACCATCTTCACTCGTACGCCAGATC
TCTCTCCCACGTAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig116883:6..419+

>mRNA_M-pyrifera_M_contig116883.3492.1 ID=mRNA_M-pyrifera_M_contig116883.3492.1|Name=mRNA_M-pyrifera_M_contig116883.3492.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig116883:6..419+ (Macrocystis pyrifera P11B4 male)
CAGATTGACCTGGACATTCCACGCTGCCACCAGTACCACCCTCTGCTCTC
CTCCAAGGAGGGCCACAAGCGGCTGCGTAACGTGCTGAAGGCCTGGGTTG
CCGCCAACCCAGGCTGGACGTATTGGCAGGGCCTGGACTCCCTCCTCGCT
CCCTTCGTTACGCTGAACTTCAATGACGAGGCGCGAGCCTACGCCTGCCT
CATGGAAGTGGTGCACAAGTACCTCCACAACTTCTTCCTCAAGGACAACG
CCACCTATCTGCAGGGCCACCTCCTCATCTTCCGCCAGCTGCTCAGCTTC
CACGACCCCCAGTTGGCTGTCCACCTGCACGAGCTGGGCTTCAACCCCGA
GCTCTTCGCCATCCCCTGGTTCCTCACCATCTTCACTCGTACGCCAGATC
TCTCTCCCACGTACCAGATTGACCTGGACATTCCACGCTGCCACCAGTAC
CACCCTCTGCTCTCCTCCAAGGAGGGCCACAAGCGGCTGCGTAACGTGCT
GAAGGCCTGGGTTGCCGCCAACCCAGGCTGGACGTATTGGCAGGGCCTGG
ACTCCCTCCTCGCTCCCTTCGTTACGCTGAACTTCAATGACGAGGCGCGA
GCCTACGCCTGCCTCATGGAAGTGGTGCACAAGTACCTCCACAACTTCTT
CCTCAAGGACAACGCCACCTATCTGCAGGGCCACCTCCTCATCTTCCGCC
AGCTGCTCAGCTTCCACGACCCCCAGTTGGCTGTCCACCTGCACGAGCTG
GGCTTCAACCCCGAGCTCTTCGCCATCCCCTGGTTCCTCACCATCTTCAC
TCGTACGCCAGATCTCTCTCCCACGTAC
back to top