mRNA_M-pyrifera_M_contig116881.3491.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116881.3491.1
Unique NamemRNA_M-pyrifera_M_contig116881.3491.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116881.3491.1 vs. uniprot
Match: UPI001FD10C6A (NeuD/PglB/VioB family sugar acetyltransferase n=1 Tax=Hymenobacter sp. 5116S-27 TaxID=2932249 RepID=UPI001FD10C6A)

HSP 1 Score: 57.0 bits (136), Expect = 7.780e-7
Identity = 71/145 (48.97%), Postives = 88/145 (60.69%), Query Frame = 1 
Query:   52 ELKTILAIDQPKIR---AKWFEQYSASCVKLIASNAFVSKRAS-LGHANIVQRGVHIGANVQTGTACKFNINSTLHHDVKIGDFCTIAPGAQILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISDVADGLTVVGVPAK 474
            + + +L +   K+R   A+ FE         +A+ A +S+ AS LG    V +   I  N Q G     N   ++HHDV +G FC IAPGA++L    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX    DV D  TVVGVPA+
Sbjct:   60 DCRFVLGVGGVKVRQMLARKFEALGGELTSALAATAMISRYASSLGPGLNVMQQALISPNAQVGEGTLLNTACSIHHDVVVGAFCEIAPGARLLGNVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVNQDVPDHTTVVGVPAR 204
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BLAST of mRNA_M-pyrifera_M_contig116881.3491.1 vs. uniprot
Match: E4TQ24_MARTH (Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) TaxID=643867 RepID=E4TQ24_MARTH)

HSP 1 Score: 56.2 bits (134), Expect = 1.490e-6
Identity = 29/87 (33.33%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:   64 ILAIDQPKIRAKWFEQY--SASCVKLIASNAFVSKRASLGHANIVQRGVHIGANVQTGTACKFNINSTLHHDVKIGDFCTIAPGAQI 318
            I+A+  PK R K    +    +   +I  +A +S    +G   I+  G  I  N++ G  C  N+N+T+ HD KIG++ T APG  I
Sbjct:   69 IIAVGDPKTRQKIANSFPKETTYFSIIHPSAIISPWTKIGKGAIITAGTIITCNIEIGDHCHLNLNTTIGHDCKIGNYFTTAPGVNI 155
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BLAST of mRNA_M-pyrifera_M_contig116881.3491.1 vs. uniprot
Match: UPI00166B3B8B (acetyltransferase n=1 Tax=Deinococcus ruber TaxID=1848197 RepID=UPI00166B3B8B)

HSP 1 Score: 51.6 bits (122), Expect = 7.720e-5
Identity = 30/105 (28.57%), Postives = 50/105 (47.62%), Query Frame = 1 
Query:   16 DSDWPTIVAGHPELKTILAIDQPKIRAKWFEQYSA----SCVKLIASNAFVSKRASLGHANIVQRGVHIGANVQTGTACKFNINSTLHHDVKIGDFCTIAPGAQI 318
            D  W   +A HP++  ++ I  P +R K  E+           LI  +A +  R  +G   ++  GV    ++  G     NI +T+ H+  +GD+ TIAPGA +
Sbjct:   57 DIGW---LADHPDVHVVVGIGAPALRRKVVERIKGLGHTKFATLIHPSAVIGNRIQMGEGVVICAGVVATTDLMIGNHVLINIVATVAHEDVVGDYVTIAPGANV 158
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BLAST of mRNA_M-pyrifera_M_contig116881.3491.1 vs. uniprot
Match: A0A0Q4SD66_9PSED (Acetyltransferase n=3 Tax=Pseudomonas TaxID=286 RepID=A0A0Q4SD66_9PSED)

HSP 1 Score: 51.2 bits (121), Expect = 9.080e-5
Identity = 38/160 (23.75%), Postives = 63/160 (39.38%), Query Frame = 1 
Query:    4 VLGSDSDWPTIVAGHPELKTILAIDQPKI-RAKWFEQYSASCVKLIASNAFVSKRASLGHANIVQRGVHIGANVQTGTACKFNINSTLHHDVKIGDFCTIAPGAQILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISDVADGLTVVGVPAKAK 480
            V+G+ +D    +  +PE+   +  ++ ++ +         + V L+   AFVS RA LG   +V            G  C  N   ++ HD ++G    I+PG  +                                    +SD+ DGLTVVGVPAK++
Sbjct:   45 VVGNTADLLHQIDKYPEVSVAIGHNRTRLAKLALLRNSGFTAVTLVHPRAFVSSRAVLGAGVVVFXXXXXXXFANVGDGCILNTLCSVDHDCELGAGVHISPGVNLAGSVVVGEASWIGIGASVRQLLKIGSDVVVGAGAAVVSDIQDGLTVVGVPAKSR 204
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116881.3491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI001FD10C6A7.780e-748.97NeuD/PglB/VioB family sugar acetyltransferase n=1 ... [more]
E4TQ24_MARTH1.490e-633.33Sugar O-acyltransferase, sialic acid O-acetyltrans... [more]
UPI00166B3B8B7.720e-528.57acetyltransferase n=1 Tax=Deinococcus ruber TaxID=... [more]
A0A0Q4SD66_9PSED9.080e-523.75Acetyltransferase n=3 Tax=Pseudomonas TaxID=286 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116881contigM-pyrifera_M_contig116881:46..546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue6.8e-07
Seed eggNOG ortholog243231.GSU1973
Preferred namepglB
KEGG rclassRC00004,RC00166
KEGG koko:K13006,ko:K15913
KEGG ReactionR10099
KEGG Pathwayko00520,map00520
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Bacterial transferase hexapeptide (six repeats)
EggNOG OGs1MZ7U@1224,2WQYB@28221,42RVS@68525,COG0110@1,COG0110@2
EC2.3.1.203
COG Functional cat.GM
Best tax levelDeltaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01005
Exons1
Model size501
Cds size501
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815685.4193094-CDS-M-pyrifera_M_contig116881:45..5461622815685.4193094-CDS-M-pyrifera_M_contig116881:45..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116881 46..546 -
1692277521.075261-CDS-M-pyrifera_M_contig116881:45..5461692277521.075261-CDS-M-pyrifera_M_contig116881:45..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116881 46..546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116881.3491.1prot_M-pyrifera_M_contig116881.3491.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116881 46..546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116881.3491.1

>prot_M-pyrifera_M_contig116881.3491.1 ID=prot_M-pyrifera_M_contig116881.3491.1|Name=mRNA_M-pyrifera_M_contig116881.3491.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
PVLGSDSDWPTIVAGHPELKTILAIDQPKIRAKWFEQYSASCVKLIASNA
FVSKRASLGHANIVQRGVHIGANVQTGTACKFNINSTLHHDVKIGDFCTI
APGAQILGNVTIGAQSYIGAGAIIKQNCTIGENVTVGAGAVVISDVADGL
TVVGVPAKAKDVFKSK*
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mRNA from alignment at M-pyrifera_M_contig116881:46..546-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116881.3491.1 ID=mRNA_M-pyrifera_M_contig116881.3491.1|Name=mRNA_M-pyrifera_M_contig116881.3491.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig116881:46..546- (Macrocystis pyrifera P11B4 male)
CCAGTGTTAGGCTCTGACTCCGATTGGCCAACGATTGTTGCCGGTCACCC
TGAACTTAAAACTATACTTGCGATTGATCAGCCTAAAATTCGTGCAAAAT
GGTTTGAACAGTACAGTGCAAGTTGCGTTAAATTAATCGCAAGTAATGCA
TTTGTATCCAAACGCGCAAGTTTAGGTCACGCTAATATTGTACAGAGGGG
TGTACATATTGGCGCTAACGTTCAAACAGGCACTGCCTGTAAATTTAATA
TAAATTCTACTCTTCATCATGACGTTAAAATTGGCGACTTTTGTACAATA
GCACCAGGCGCACAAATTTTGGGTAATGTAACCATCGGCGCGCAAAGTTA
TATCGGTGCCGGCGCCATCATTAAGCAAAACTGCACAATAGGTGAAAATG
TGACAGTCGGTGCTGGAGCCGTGGTTATATCTGATGTTGCAGATGGATTG
ACGGTAGTTGGGGTTCCGGCAAAAGCGAAAGATGTTTTCAAATCAAAATA
G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116881:46..546-

>mRNA_M-pyrifera_M_contig116881.3491.1 ID=mRNA_M-pyrifera_M_contig116881.3491.1|Name=mRNA_M-pyrifera_M_contig116881.3491.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig116881:46..546- (Macrocystis pyrifera P11B4 male)
CCAGTGTTAGGCTCTGACTCCGATTGGCCAACGATTGTTGCCGGTCACCC
TGAACTTAAAACTATACTTGCGATTGATCAGCCTAAAATTCGTGCAAAAT
GGTTTGAACAGTACAGTGCAAGTTGCGTTAAATTAATCGCAAGTAATGCA
TTTGTATCCAAACGCGCAAGTTTAGGTCACGCTAATATTGTACAGAGGGG
TGTACATATTGGCGCTAACGTTCAAACAGGCACTGCCTGTAAATTTAATA
TAAATTCTACTCTTCATCATGACGTTAAAATTGGCGACTTTTGTACAATA
GCACCAGGCGCACAAATTTTGGGTAATGTAACCATCGGCGCGCAAAGTTA
TATCGGTGCCGGCGCCATCATTAAGCAAAACTGCACAATAGGTGAAAATG
TGACAGTCGGTGCTGGAGCCGTGGTTATATCTGATGTTGCAGATGGATTG
ACGGTAGTTGGGGTTCCGGCAAAAGCGAAAGATGTTTTCAAATCAAAATA
GCCAGTGTTAGGCTCTGACTCCGATTGGCCAACGATTGTTGCCGGTCACC
CTGAACTTAAAACTATACTTGCGATTGATCAGCCTAAAATTCGTGCAAAA
TGGTTTGAACAGTACAGTGCAAGTTGCGTTAAATTAATCGCAAGTAATGC
ATTTGTATCCAAACGCGCAAGTTTAGGTCACGCTAATATTGTACAGAGGG
GTGTACATATTGGCGCTAACGTTCAAACAGGCACTGCCTGTAAATTTAAT
ATAAATTCTACTCTTCATCATGACGTTAAAATTGGCGACTTTTGTACAAT
AGCACCAGGCGCACAAATTTTGGGTAATGTAACCATCGGCGCGCAAAGTT
ATATCGGTGCCGGCGCCATCATTAAGCAAAACTGCACAATAGGTGAAAAT
GTGACAGTCGGTGCTGGAGCCGTGGTTATATCTGATGTTGCAGATGGATT
GACGGTAGTTGGGGTTCCGGCAAAAGCGAAAGATGTTTTCAAATCAAAAT
AG
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