mRNA_M-pyrifera_M_contig116860.3482.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116860.3482.1
Unique NamemRNA_M-pyrifera_M_contig116860.3482.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116860.3482.1 vs. uniprot
Match: UPI001FE2E7CE (2-isopropylmalate synthase n=2 Tax=Marivivens TaxID=1759396 RepID=UPI001FE2E7CE)

HSP 1 Score: 47.8 bits (112), Expect = 8.310e-5
Identity = 21/50 (42.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   13 EVTGMGVISFANGNMYSGELEDGLRHGQGTMKYADGTSYTGLWDYDQKVD 162
            E++G GV +++NG++Y+G    G R G G M+YADG    G W+ +  VD
Sbjct:  402 EISGQGVATYSNGDIYTGTFVAGRRQGDGRMQYADGEVEQGEWEDNVFVD 451
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116860.3482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001FE2E7CE8.310e-542.002-isopropylmalate synthase n=2 Tax=Marivivens TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116860contigM-pyrifera_M_contig116860:394..558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size141
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.9590309-CDS-M-pyrifera_M_contig116860:393..5341622815684.9590309-CDS-M-pyrifera_M_contig116860:393..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116860 394..534 -
1692277520.914255-CDS-M-pyrifera_M_contig116860:393..5341692277520.914255-CDS-M-pyrifera_M_contig116860:393..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116860 394..534 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.9727664-UTR-M-pyrifera_M_contig116860:534..5581622815684.9727664-UTR-M-pyrifera_M_contig116860:534..558Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116860 535..558 -
1692277520.9275017-UTR-M-pyrifera_M_contig116860:534..5581692277520.9275017-UTR-M-pyrifera_M_contig116860:534..558Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116860 535..558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116860.3482.1prot_M-pyrifera_M_contig116860.3482.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116860 394..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116860.3482.1

>prot_M-pyrifera_M_contig116860.3482.1 ID=prot_M-pyrifera_M_contig116860.3482.1|Name=mRNA_M-pyrifera_M_contig116860.3482.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
MGVISFANGNMYSGELEDGLRHGQGTMKYADGTSYTGLWDYDQKVD*
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mRNA from alignment at M-pyrifera_M_contig116860:394..558-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116860.3482.1 ID=mRNA_M-pyrifera_M_contig116860.3482.1|Name=mRNA_M-pyrifera_M_contig116860.3482.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig116860:394..558- (Macrocystis pyrifera P11B4 male)
TTCAATAAAAATGAAGTAACAGGAATGGGCGTAATTAGCTTTGCTAATGG
TAATATGTATTCTGGTGAACTTGAAGATGGCCTCAGGCATGGTCAGGGAA
CTATGAAATATGCTGATGGCACATCTTATACTGGACTTTGGGATTATGAC
CAAAAAGTAGATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116860:394..558-

>mRNA_M-pyrifera_M_contig116860.3482.1 ID=mRNA_M-pyrifera_M_contig116860.3482.1|Name=mRNA_M-pyrifera_M_contig116860.3482.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig116860:394..558- (Macrocystis pyrifera P11B4 male)
ATGGGCGTAATTAGCTTTGCTAATGGTAATATGTATTCTGGTGAACTTGA
AGATGGCCTCAGGCATGGTCAGGGAACTATGAAATATGCTGATGGCACAT
CTTATACTGGACTTTGGGATTATGACCAAAAAGTAGATTAAATGGGCGTA
ATTAGCTTTGCTAATGGTAATATGTATTCTGGTGAACTTGAAGATGGCCT
CAGGCATGGTCAGGGAACTATGAAATATGCTGATGGCACATCTTATACTG
GACTTTGGGATTATGACCAAAAAGTAGATTAA
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