mRNA_M-pyrifera_M_contig116730.3464.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116730.3464.1
Unique NamemRNA_M-pyrifera_M_contig116730.3464.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116730.3464.1 vs. uniprot
Match: A0A2E7KB61_9PLAN (Cytochrome c domain-containing protein n=9 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KB61_9PLAN)

HSP 1 Score: 294 bits (753), Expect = 4.460e-92
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1
Query:    1 SGIITVGAGKVSKDRRELKRSIYVQVRRTQPVTMLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQSEAFAKRVLTTAGKDADDTKLIKTAWKLALSSEPSPAELQALEKNFALQLKEYQTKKAKQPREEALAAVCHVLFGTNQFLYVE 462
            SGIITVGAGKVSKDRRELKRSIYVQVRRTQPVTMLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQSEAFAKRVLTTAGKDADDTKLIKTAWKLALSSEPSPAELQALEKNFALQLKEYQTKKAKQPREEALAAVCHVLFGTNQFLYVE
Sbjct:  729 SGIITVGAGKVSKDRRELKRSIYVQVRRTQPVTMLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQSEAFAKRVLTTAGKDADDTKLIKTAWKLALSSEPSPAELQALEKNFALQLKEYQTKKAKQPREEALAAVCHVLFGTNQFLYVE 882          
BLAST of mRNA_M-pyrifera_M_contig116730.3464.1 vs. uniprot
Match: A0A518ID04_9PLAN (Planctomycete cytochrome C n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518ID04_9PLAN)

HSP 1 Score: 268 bits (685), Expect = 3.540e-82
Identity = 137/154 (88.96%), Postives = 148/154 (96.10%), Query Frame = 1
Query:    1 SGIITVGAGKVSKDRRELKRSIYVQVRRTQPVTMLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQSEAFAKRVLTTAGKDADDTKLIKTAWKLALSSEPSPAELQALEKNFALQLKEYQTKKAKQPREEALAAVCHVLFGTNQFLYVE 462
            SGIITVGAGK+SKDRRELKRSIY+QVRRTQPVTMLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQS AFAKRVLT+AGKDADD  LIKTAWK+ALS+EPS AE+QALEK+FALQLKEY++KK K PR+EALAA+CHVLFGTNQFLYVE
Sbjct:  728 SGIITVGAGKISKDRRELKRSIYIQVRRTQPVTMLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQSVAFAKRVLTSAGKDADDAILIKTAWKMALSTEPSAAEMQALEKSFALQLKEYESKKVKGPRQEALAAICHVLFGTNQFLYVE 881          
BLAST of mRNA_M-pyrifera_M_contig116730.3464.1 vs. uniprot
Match: A0A2E2C3H9_9PLAN (Cytochrome c domain-containing protein n=8 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C3H9_9PLAN)

HSP 1 Score: 242 bits (617), Expect = 2.280e-72
Identity = 124/154 (80.52%), Postives = 138/154 (89.61%), Query Frame = 1
Query:    1 SGIITVGAGKVSKDRRELKRSIYVQVRRTQPVTMLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQSEAFAKRVLTTAGKDADDTKLIKTAWKLALSSEPSPAELQALEKNFALQLKEYQTKKAKQPREEALAAVCHVLFGTNQFLYVE 462
            SGIITVG+GK+S DRRELKRSIY+QVRRTQPVTMLNAFDAPSMEPNCE+RV STVATQSLALLNSEFMR QS AFAKRVL TA K AD   L++TAWKLALS+EPS AELQALEK++ LQL+EYQ KK K PR+EAL ++CHVLFGTNQFLY+E
Sbjct:  728 SGIITVGSGKISPDRRELKRSIYIQVRRTQPVTMLNAFDAPSMEPNCEQRVSSTVATQSLALLNSEFMREQSVAFAKRVLATAEKPADAANLVQTAWKLALSNEPSSAELQALEKHYQLQLQEYQAKKVKAPRQEALTSLCHVLFGTNQFLYIE 881          
BLAST of mRNA_M-pyrifera_M_contig116730.3464.1 vs. uniprot
Match: A0A517VX93_9PLAN (Planctomycete cytochrome C n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VX93_9PLAN)

HSP 1 Score: 238 bits (607), Expect = 6.250e-71
Identity = 117/154 (75.97%), Postives = 139/154 (90.26%), Query Frame = 1
Query:    1 SGIITVGAGKVSKDRRELKRSIYVQVRRTQPVTMLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQSEAFAKRVLTTAGKDADDTKLIKTAWKLALSSEPSPAELQALEKNFALQLKEYQTKKAKQPREEALAAVCHVLFGTNQFLYVE 462
            SG+ITVGAGK+SKDRRELKRS+Y+QVRRTQPVTMLNAFDAPSMEPNCERRV STVATQSLALLNSEFMR QS AFAKRV+ +  +  D+  +I+TAWK+AL SEPSPAE+QAL+K+  LQ+KEY+T+K + P+EE+LAA+CHVLFGTNQFLY+E
Sbjct:  729 SGLITVGAGKISKDRRELKRSVYIQVRRTQPVTMLNAFDAPSMEPNCERRVSSTVATQSLALLNSEFMRTQSVAFAKRVIASVSQKTDNETIIRTAWKMALCSEPSPAEMQALQKHMQLQIKEYKTQKVQNPQEESLAALCHVLFGTNQFLYIE 882          
BLAST of mRNA_M-pyrifera_M_contig116730.3464.1 vs. uniprot
Match: A0A2D5H1I5_9PLAN (PSD1 domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2D5H1I5_9PLAN)

HSP 1 Score: 189 bits (480), Expect = 1.570e-59
Identity = 97/121 (80.17%), Postives = 106/121 (87.60%), Query Frame = 1
Query:  100 MLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQSEAFAKRVLTTAGKDADDTKLIKTAWKLALSSEPSPAELQALEKNFALQLKEYQTKKAKQPREEALAAVCHVLFGTNQFLYVE 462
            MLNAFDAPSMEPNCERRV STVATQSLALLNSEFMR QS AFAKRVL TA K  D  KL++TAWKLALS EPS AE+QALEK++ LQL+EYQ KK K PR+EALA++CHVLFGTNQFLYVE
Sbjct:    1 MLNAFDAPSMEPNCERRVSSTVATQSLALLNSEFMREQSVAFAKRVLATAEKSTDPKKLVQTAWKLALSHEPSAAEMQALEKHYQLQLQEYQAKKVKDPRQEALASLCHVLFGTNQFLYVE 121          
BLAST of mRNA_M-pyrifera_M_contig116730.3464.1 vs. uniprot
Match: A0A5C5XDZ1_9PLAN (Planctomycete cytochrome C n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A5C5XDZ1_9PLAN)

HSP 1 Score: 176 bits (445), Expect = 3.660e-48
Identity = 86/153 (56.21%), Postives = 115/153 (75.16%), Query Frame = 1
Query:    4 GIITVGAGKVSKDRRELKRSIYVQVRRTQPVTMLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQSEAFAKRVLTTAGKDADDTKLIKTAWKLALSSEPSPAELQALEKNFALQLKEYQTKKAKQPREEALAAVCHVLFGTNQFLYVE 462
            G++TVG GK+S+DRRELKR++Y+QVRRT+PV ML AFDAPSMEPNCERRV STVATQSLALLNS+F+  Q+EAFAKR+    G++   +  +   W  A S  PSPAE++A     + Q   ++ +K KQP E ALA++C +LF +N+FLY++
Sbjct:  748 GVLTVGGGKISEDRRELKRTVYIQVRRTEPVAMLQAFDAPSMEPNCERRVVSTVATQSLALLNSDFVLQQAEAFAKRIGKELGENGSPSDQVTAVWNHAYSRTPSPAEMEAATAYLSSQAAHFENQKQKQPDELALASLCQILFSSNEFLYLD 900          
BLAST of mRNA_M-pyrifera_M_contig116730.3464.1 vs. uniprot
Match: A0A517ZR96_9PLAN (Planctomycete cytochrome C n=4 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZR96_9PLAN)

HSP 1 Score: 121 bits (304), Expect = 4.380e-29
Identity = 68/143 (47.55%), Postives = 92/143 (64.34%), Query Frame = 1
Query:   46 RELKRSIYVQVRRTQPVTMLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQSEAFAKRVLTTAGKDADDTKLIKTAWKLALSSEPSPAELQALEKNFALQLKEYQTKKAKQ----PREEALAAVCHVLFGTNQFLYVE 462
            +E +RS+Y+QVRR+QP+ +L+AFDAP MEPNCE R  STVA Q+L L+NS F  + +E FA+R+   AG  A+ TK    AW+LA   EPS +E QA       Q + +++ K K     P + ALA  C  LF TN+FLYV+
Sbjct:  728 KEFRRSVYIQVRRSQPLAVLDAFDAPIMEPNCEARTPSTVAPQALMLMNSNFTISLAEHFAQRIAADAG--AEPTKRAALAWRLAFGVEPSESEQQAAVDFLNDQAEHFKSHKIKDDKTSPEDHALAVFCQALFSTNRFLYVD 868          
BLAST of mRNA_M-pyrifera_M_contig116730.3464.1 vs. uniprot
Match: L0DQ94_SINAD (Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) TaxID=886293 RepID=L0DQ94_SINAD)

HSP 1 Score: 119 bits (299), Expect = 2.070e-28
Identity = 70/157 (44.59%), Postives = 96/157 (61.15%), Query Frame = 1
Query:   19 GAGKVSKDRREL-----KRSIYVQVRRTQPVTMLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQSEAFAKRVLTTAGKDADDTKLIKTAWKLALSSEPSPAELQALEKNFALQLKEYQTK----KAKQPREEALAAVCHVLFGTNQFLYVE 462
            GAG+  ++R  L     +RS+Y+QVRR+ P+ +L  FDAP M PNCE+R  STVA QSL ++NSEF+  Q+EAFA RV   AG D      I+ AW+LAL+ EP P E+++     A Q +++       K   P  +ALA  C  LF +N FLYV+
Sbjct:  723 GAGRPVRERASLGSAEWRRSLYIQVRRSLPLGLLETFDAPPMTPNCEQRTSSTVAPQSLMMMNSEFIVQQAEAFAMRVAHEAGDDPRAR--IQVAWRLALALEPRPEEVESAAHFLASQQEDFAASAKAGKKVDPAHQALATFCQALFSSNAFLYVD 877          
BLAST of mRNA_M-pyrifera_M_contig116730.3464.1 vs. uniprot
Match: A0A1N6HSU7_9BACT (Planctomycete cytochrome C n=1 Tax=Singulisphaera sp. GP187 TaxID=1882752 RepID=A0A1N6HSU7_9BACT)

HSP 1 Score: 113 bits (283), Expect = 2.930e-26
Identity = 65/144 (45.14%), Postives = 94/144 (65.28%), Query Frame = 1
Query:   49 ELKRSIYVQVRRTQPVTMLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQSEAFAKRVLTTAGKDADDTKLIKTAWKLALSSEPSPAELQALEKNFALQLKEYQ-TKKAK-----QPREEALAAVCHVLFGTNQFLYVE 462
            E +RS+Y+QVRR+ P+ +L  FDAP M PNCERR  STVA QSL ++N++F+  Q+E FA RV   AG DA   + ++ AW+LAL+ EP+P ++++  +  A Q  ++  T+ AK      P  +ALA  C  LF +N FLYV+
Sbjct:  733 EWRRSLYIQVRRSLPLGLLETFDAPPMTPNCERRTSSTVAPQSLMMMNNDFVVQQAETFAGRVAHEAG-DAPKAR-VELAWRLALALEPAPEQVESAVRFLADQQADFAATRNAKPSKKADPAHQALATFCQALFSSNAFLYVD 874          
BLAST of mRNA_M-pyrifera_M_contig116730.3464.1 vs. uniprot
Match: A0A2E8D960_9PLAN (Cytochrome c domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8D960_9PLAN)

HSP 1 Score: 112 bits (279), Expect = 1.010e-25
Identity = 65/147 (44.22%), Postives = 94/147 (63.95%), Query Frame = 1
Query:   49 ELKRSIYVQVRRTQPVTMLNAFDAPSMEPNCERRVFSTVATQSLALLNSEFMRNQSEAFAKRVLTTAGKDADDT-KLIKTAWKLALSSEPSPAEL-------QALEKNFALQ-LKEYQTKKAKQPREEALAAVCHVLFGTNQFLYVE 462
            + +RS+Y+Q RR++P++++  FD P MEPNC  R  STVA QSL L+NS+F   ++  FA+RV +  G   DDT + I+ AW+LA +SEPS  EL       +A +K+FA     E + KK   P+ EAL + CH L  +N+FLYV+
Sbjct:  734 DFRRSVYIQARRSRPLSVMAPFDLPRMEPNCTSRNASTVAPQSLMLMNSQFATTRANEFARRVQSDVG---DDTARQIQLAWQLAFASEPSEQELTEAVSFVEAQKKHFAANPAPEAKDKKKVLPQHEALTSFCHALLSSNRFLYVD 877          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116730.3464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KB61_9PLAN4.460e-92100.00Cytochrome c domain-containing protein n=9 Tax=Gim... [more]
A0A518ID04_9PLAN3.540e-8288.96Planctomycete cytochrome C n=2 Tax=Gimesia TaxID=1... [more]
A0A2E2C3H9_9PLAN2.280e-7280.52Cytochrome c domain-containing protein n=8 Tax=Pla... [more]
A0A517VX93_9PLAN6.250e-7175.97Planctomycete cytochrome C n=2 Tax=Gimesia aquarii... [more]
A0A2D5H1I5_9PLAN1.570e-5980.17PSD1 domain-containing protein n=2 Tax=Gimesia Tax... [more]
A0A5C5XDZ1_9PLAN3.660e-4856.21Planctomycete cytochrome C n=5 Tax=Planctomycetace... [more]
A0A517ZR96_9PLAN4.380e-2947.55Planctomycete cytochrome C n=4 Tax=Symmachiella Ta... [more]
L0DQ94_SINAD2.070e-2844.59Uncharacterized protein n=1 Tax=Singulisphaera aci... [more]
A0A1N6HSU7_9BACT2.930e-2645.14Planctomycete cytochrome C n=1 Tax=Singulisphaera ... [more]
A0A2E8D960_9PLAN1.010e-2544.22Cytochrome c domain-containing protein n=1 Tax=Pla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116730contigM-pyrifera_M_contig116730:2..466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score249.2
Seed ortholog evalue1.2e-63
Seed eggNOG ortholog344747.PM8797T_30072
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cytochrome c
EggNOG OGsCOG2010@1,COG2010@2
COG Functional cat.C
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size465
Cds size465
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.0026495-CDS-M-pyrifera_M_contig116730:1..4661622815684.0026495-CDS-M-pyrifera_M_contig116730:1..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116730 2..466 +
1692277520.428582-CDS-M-pyrifera_M_contig116730:1..4661692277520.428582-CDS-M-pyrifera_M_contig116730:1..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116730 2..466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116730.3464.1prot_M-pyrifera_M_contig116730.3464.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116730 2..466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116730.3464.1

>prot_M-pyrifera_M_contig116730.3464.1 ID=prot_M-pyrifera_M_contig116730.3464.1|Name=mRNA_M-pyrifera_M_contig116730.3464.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
SGIITVGAGKVSKDRRELKRSIYVQVRRTQPVTMLNAFDAPSMEPNCERR
VFSTVATQSLALLNSEFMRNQSEAFAKRVLTTAGKDADDTKLIKTAWKLA
LSSEPSPAELQALEKNFALQLKEYQTKKAKQPREEALAAVCHVLFGTNQF
LYVE*
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mRNA from alignment at M-pyrifera_M_contig116730:2..466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116730.3464.1 ID=mRNA_M-pyrifera_M_contig116730.3464.1|Name=mRNA_M-pyrifera_M_contig116730.3464.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig116730:2..466+ (Macrocystis pyrifera P11B4 male)
AGCGGCATTATTACGGTCGGCGCTGGTAAAGTATCAAAAGATCGCCGGGA ACTGAAACGTTCCATTTACGTGCAGGTCCGGCGGACACAGCCGGTGACAA TGCTGAATGCCTTTGATGCCCCCAGCATGGAGCCTAACTGCGAGCGACGG GTCTTTTCGACAGTGGCAACACAGTCACTGGCGCTGCTCAATAGTGAATT CATGCGGAATCAATCTGAGGCCTTTGCTAAGCGAGTACTCACCACGGCAG GGAAAGACGCCGACGATACTAAGCTAATCAAGACAGCCTGGAAGCTGGCT TTAAGTAGTGAGCCTTCCCCGGCTGAACTGCAGGCGCTTGAGAAAAACTT CGCGCTGCAGTTGAAAGAATATCAGACAAAGAAAGCCAAACAGCCTCGGG AGGAAGCACTGGCTGCCGTCTGTCATGTGCTGTTTGGAACCAACCAGTTT CTGTATGTGGAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116730:2..466+

>mRNA_M-pyrifera_M_contig116730.3464.1 ID=mRNA_M-pyrifera_M_contig116730.3464.1|Name=mRNA_M-pyrifera_M_contig116730.3464.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig116730:2..466+ (Macrocystis pyrifera P11B4 male)
AGCGGCATTATTACGGTCGGCGCTGGTAAAGTATCAAAAGATCGCCGGGA
ACTGAAACGTTCCATTTACGTGCAGGTCCGGCGGACACAGCCGGTGACAA
TGCTGAATGCCTTTGATGCCCCCAGCATGGAGCCTAACTGCGAGCGACGG
GTCTTTTCGACAGTGGCAACACAGTCACTGGCGCTGCTCAATAGTGAATT
CATGCGGAATCAATCTGAGGCCTTTGCTAAGCGAGTACTCACCACGGCAG
GGAAAGACGCCGACGATACTAAGCTAATCAAGACAGCCTGGAAGCTGGCT
TTAAGTAGTGAGCCTTCCCCGGCTGAACTGCAGGCGCTTGAGAAAAACTT
CGCGCTGCAGTTGAAAGAATATCAGACAAAGAAAGCCAAACAGCCTCGGG
AGGAAGCACTGGCTGCCGTCTGTCATGTGCTGTTTGGAACCAACCAGTTT
CTGTATGTGGAATAAAGCGGCATTATTACGGTCGGCGCTGGTAAAGTATC
AAAAGATCGCCGGGAACTGAAACGTTCCATTTACGTGCAGGTCCGGCGGA
CACAGCCGGTGACAATGCTGAATGCCTTTGATGCCCCCAGCATGGAGCCT
AACTGCGAGCGACGGGTCTTTTCGACAGTGGCAACACAGTCACTGGCGCT
GCTCAATAGTGAATTCATGCGGAATCAATCTGAGGCCTTTGCTAAGCGAG
TACTCACCACGGCAGGGAAAGACGCCGACGATACTAAGCTAATCAAGACA
GCCTGGAAGCTGGCTTTAAGTAGTGAGCCTTCCCCGGCTGAACTGCAGGC
GCTTGAGAAAAACTTCGCGCTGCAGTTGAAAGAATATCAGACAAAGAAAG
CCAAACAGCCTCGGGAGGAAGCACTGGCTGCCGTCTGTCATGTGCTGTTT
GGAACCAACCAGTTTCTGTATGTGGAATAA
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