mRNA_M-pyrifera_M_contig116729.3463.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig116729.3463.1 vs. uniprot
Match: A0A5A8D508_CAFRO (T-complex protein 1 subunit epsilon n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D508_CAFRO) HSP 1 Score: 280 bits (717), Expect = 1.760e-89 Identity = 136/184 (73.91%), Postives = 160/184 (86.96%), Query Frame = 1
Query: 1 LSSKILSKHKRAMAEIAVDAVLSVADLDRKDVNFDLIKVEGKSGGKMEDTELVRGIVLDKTFAHFQMPSEVKDARVAVVTFPFEPPKPKTKHKLDITSAEAYARLHATEQAYFEEMISKLKAVGATMVICQWGLDDEATHLLVRNKLPTVRWVGGVELELIAIATGARIVPRVSELAPEKLGRA 552
LSSKI++KHKR MA+IAVDAVLSVADL+R+DVNFDLIKVEGK+GGKMEDTEL+RG+V+DK F+H QMP VKDAR+A++T PFEPPKPKTKH+LDIT+ EAYA+L E+AYF+ MI ++ GA MV+CQWG DDEA HLL+RNKLP VRWVGGVELELIAIATG RIVPR EL +KLG+A
Sbjct: 169 LSSKIVNKHKREMAQIAVDAVLSVADLERRDVNFDLIKVEGKAGGKMEDTELIRGVVIDKDFSHPQMPKFVKDARIAILTAPFEPPKPKTKHRLDITTPEAYAKLAEAERAYFDRMIRQVLDSGANMVVCQWGFDDEANHLLLRNKLPAVRWVGGVELELIAIATGGRIVPRFEELTADKLGKA 352
BLAST of mRNA_M-pyrifera_M_contig116729.3463.1 vs. uniprot
Match: A0A7S3PR08_9STRA (T-complex protein 1 subunit epsilon n=3 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR08_9STRA) HSP 1 Score: 275 bits (704), Expect = 1.570e-87 Identity = 133/185 (71.89%), Postives = 158/185 (85.41%), Query Frame = 1
Query: 1 LSSKILSKHKRAMAEIAVDAVLSVADLDRKDVNFDLIKVEGKSGGKMEDTELVRGIVLDKTFAHFQMPSEVKDARVAVVTFPFEPPKPKTKHKLDITSAEAYARLHATEQAYFEEMISKLKAVGATMVICQWGLDDEATHLLVRNKLPTVRWVGGVELELIAIATGARIVPRVSELAPEKLGRAG 555
LSSKI++++K +MAEIAV+AVL+VADL+RKDVNFDLIK+EGK GG +EDT L+ GIVLDK F+H QMP EVKDA++ ++T PFEPPKPKTKHKLDI SAEAY +L+ EQ YF +M+ K+K GA MVICQWG DDEA HLL++NKLP VRWVGGVE+ELIAIATG RIVPR EL PEKLG+AG
Sbjct: 169 LSSKIVNRYKESMAEIAVNAVLAVADLERKDVNFDLIKMEGKVGGTLEDTVLINGIVLDKDFSHPQMPKEVKDAKMCILTCPFEPPKPKTKHKLDINSAEAYRKLYEAEQQYFTDMVQKVKDSGANMVICQWGFDDEANHLLLQNKLPAVRWVGGVEIELIAIATGGRIVPRFEELTPEKLGKAG 353
BLAST of mRNA_M-pyrifera_M_contig116729.3463.1 vs. uniprot
Match: W7TKH6_9STRA (T-complex protein 1 subunit epsilon n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKH6_9STRA) HSP 1 Score: 275 bits (703), Expect = 2.210e-87 Identity = 134/185 (72.43%), Postives = 157/185 (84.86%), Query Frame = 1
Query: 1 LSSKILSKHKRAMAEIAVDAVLSVADLDRKDVNFDLIKVEGKSGGKMEDTELVRGIVLDKTFAHFQMPSEVKDARVAVVTFPFEPPKPKTKHKLDITSAEAYARLHATEQAYFEEMISKLKAVGATMVICQWGLDDEATHLLVRNKLPTVRWVGGVELELIAIATGARIVPRVSELAPEKLGRAG 555
LSSKI++ HK MA IAVDAVLSVADL+RKDVNFD+IKVEGK GG++EDTELVRGIV+DK +H QMP +KDA++A++T PFEPPKPKTKHKLDI+S EAY RL+ EQ YF M+ + K GA ++ICQWG DDEA HLL++N+LP VRWVGGVELELIAIATG RIVPR SEL+PEKLGRAG
Sbjct: 169 LSSKIVNIHKSKMARIAVDAVLSVADLERKDVNFDMIKVEGKPGGRLEDTELVRGIVVDKEISHPQMPKTIKDAKIAILTCPFEPPKPKTKHKLDISSREAYERLYEREQEYFTTMVRQCKDSGANLIICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFSELSPEKLGRAG 353
BLAST of mRNA_M-pyrifera_M_contig116729.3463.1 vs. uniprot
Match: A0A7R9U5R8_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5R8_9STRA) HSP 1 Score: 272 bits (696), Expect = 2.890e-86 Identity = 133/185 (71.89%), Postives = 152/185 (82.16%), Query Frame = 1
Query: 1 LSSKILSKHKRAMAEIAVDAVLSVADLDRKDVNFDLIKVEGKSGGKMEDTELVRGIVLDKTFAHFQMPSEVKDARVAVVTFPFEPPKPKTKHKLDITSAEAYARLHATEQAYFEEMISKLKAVGATMVICQWGLDDEATHLLVRNKLPTVRWVGGVELELIAIATGARIVPRVSELAPEKLGRAG 555
LSSKI++ HK MA+IAVDAVLSVAD++R DVNFD+IKVEGK GG +EDTEL+RGIV+DK F+H QMP +V A++ ++T PFEPPKPKTKHKLDITS Y RLH EQ +FE+M+ K+K GA MVICQWG DDEA HLL RN LP VRWVGGVELELIAIATG RIVPR SEL PEKLG AG
Sbjct: 176 LSSKIINVHKTKMAKIAVDAVLSVADMERHDVNFDMIKVEGKPGGSLEDTELIRGIVIDKEFSHPQMPKQVDGAKMCILTCPFEPPKPKTKHKLDITSRSDYERLHKIEQQHFEDMVQKVKDSGANMVICQWGFDDEANHLLYRNNLPAVRWVGGVELELIAIATGGRIVPRFSELTPEKLGHAG 360
BLAST of mRNA_M-pyrifera_M_contig116729.3463.1 vs. uniprot
Match: A0A7S2SNU9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNU9_9STRA) HSP 1 Score: 269 bits (687), Expect = 3.480e-86 Identity = 131/185 (70.81%), Postives = 158/185 (85.41%), Query Frame = 1
Query: 1 LSSKILSKHKRAMAEIAVDAVLSVADLDRKDVNFDLIKVEGKSGGKMEDTELVRGIVLDKTFAHFQMPSEVKDARVAVVTFPFEPPKPKTKHKLDITSAEAYARLHATEQAYFEEMISKLKAVGATMVICQWGLDDEATHLLVRNKLPTVRWVGGVELELIAIATGARIVPRVSELAPEKLGRAG 555
LSSKI++ H+ MA+IAVDAVL+VADLDR DVNFDLIK+EGK GG++++TELV+GIV+DK F+H QMP V+DA++ ++T PFEPPKPKTKHKLDITS EAY +L+ EQAYF+EM+ + K GA +VICQWG DDEA HLL++N LP VRWVGGVELELIAIATG RIVPR SEL+ EKLGRAG
Sbjct: 67 LSSKIINVHRDQMAKIAVDAVLAVADLDRHDVNFDLIKMEGKPGGRLDETELVQGIVVDKDFSHPQMPKVVEDAKMCILTCPFEPPKPKTKHKLDITSREAYEKLYDQEQAYFKEMVQQCKDCGANLVICQWGFDDEANHLLLQNDLPAVRWVGGVELELIAIATGGRIVPRFSELSAEKLGRAG 251
BLAST of mRNA_M-pyrifera_M_contig116729.3463.1 vs. uniprot
Match: A0A6T5Q400_HETAK (T-complex protein 1 subunit epsilon n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5Q400_HETAK) HSP 1 Score: 271 bits (692), Expect = 9.600e-86 Identity = 132/185 (71.35%), Postives = 155/185 (83.78%), Query Frame = 1
Query: 1 LSSKILSKHKRAMAEIAVDAVLSVADLDRKDVNFDLIKVEGKSGGKMEDTELVRGIVLDKTFAHFQMPSEVKDARVAVVTFPFEPPKPKTKHKLDITSAEAYARLHATEQAYFEEMISKLKAVGATMVICQWGLDDEATHLLVRNKLPTVRWVGGVELELIAIATGARIVPRVSELAPEKLGRAG 555
LSSKI++ HK MA IAV+AVLSVADL+R DVNFD+IK+ GK GG++E+TEL+ GIV+DK ++H QMP EV+DAR+ ++T PFEPPKPKTKHKLDITS EAY RLHA EQ YF M+ + K GA +VICQWG DDEA HLL++N+LP VRWVGGVELELIAIATG RIVPR ELAPEKLGRAG
Sbjct: 169 LSSKIINIHKDRMARIAVEAVLSVADLERHDVNFDMIKMTGKPGGRLEETELIHGIVIDKEWSHAQMPKEVRDARMCILTCPFEPPKPKTKHKLDITSREAYDRLHAREQEYFGTMVRQCKESGANVVICQWGFDDEANHLLLQNQLPAVRWVGGVELELIAIATGGRIVPRFGELAPEKLGRAG 353
BLAST of mRNA_M-pyrifera_M_contig116729.3463.1 vs. uniprot
Match: A0A835ZI55_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI55_9STRA) HSP 1 Score: 270 bits (689), Expect = 3.320e-85 Identity = 130/185 (70.27%), Postives = 155/185 (83.78%), Query Frame = 1
Query: 1 LSSKILSKHKRAMAEIAVDAVLSVADLDRKDVNFDLIKVEGKSGGKMEDTELVRGIVLDKTFAHFQMPSEVKDARVAVVTFPFEPPKPKTKHKLDITSAEAYARLHATEQAYFEEMISKLKAVGATMVICQWGLDDEATHLLVRNKLPTVRWVGGVELELIAIATGARIVPRVSELAPEKLGRAG 555
LSSKI++ HKR MAEI V+AVL+VAD++RKDVNFD+IKV+GK GG++ DTELVRGIV+DK F+H QMP E+KDA++ ++T PFEPPKPKTKHKLDITS EAY RLH EQ YF+ M+ + K GA +VICQWG DDEA HLL++N LP VRWVGGVELELIAIATG RIVPR EL+ +KLG AG
Sbjct: 176 LSSKIINVHKRQMAEICVNAVLAVADMERKDVNFDMIKVDGKPGGELGDTELVRGIVIDKEFSHPQMPKEIKDAKLCILTCPFEPPKPKTKHKLDITSKEAYERLHEREQQYFDTMVKQCKDSGANLVICQWGFDDEANHLLLQNDLPAVRWVGGVELELIAIATGGRIVPRFQELSADKLGYAG 360
BLAST of mRNA_M-pyrifera_M_contig116729.3463.1 vs. uniprot
Match: A0A6A6KUX7_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6KUX7_HEVBR) HSP 1 Score: 263 bits (673), Expect = 7.790e-85 Identity = 127/185 (68.65%), Postives = 153/185 (82.70%), Query Frame = 1
Query: 1 LSSKILSKHKRAMAEIAVDAVLSVADLDRKDVNFDLIKVEGKSGGKMEDTELVRGIVLDKTFAHFQMPSEVKDARVAVVTFPFEPPKPKTKHKLDITSAEAYARLHATEQAYFEEMISKLKAVGATMVICQWGLDDEATHLLVRNKLPTVRWVGGVELELIAIATGARIVPRVSELAPEKLGRAG 555
LSSKI+++ KR++AEIAV AVL+VADL+RKDVN DLIKVEGK GGK+EDTEL+ GIV+DK +H QMP ++KDA++A++T PFEPPKPKTKHK+DI + E + L EQ YF++M+ K K VGAT+VICQWG DDEA HLL+ LP VRWVGGVELELIAIATG RIVPR EL PEKLG+AG
Sbjct: 134 LSSKIVNRCKRSLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELIYGIVVDKDMSHPQMPKQIKDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRKQEQQYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAG 318
BLAST of mRNA_M-pyrifera_M_contig116729.3463.1 vs. uniprot
Match: Q7XBP0_BIGNA (Chaperonin-containing TCP-1 epsilon subunit (Fragment) n=1 Tax=Bigelowiella natans TaxID=227086 RepID=Q7XBP0_BIGNA) HSP 1 Score: 261 bits (667), Expect = 7.960e-85 Identity = 127/185 (68.65%), Postives = 153/185 (82.70%), Query Frame = 1
Query: 1 LSSKILSKHKRAMAEIAVDAVLSVADLDRKDVNFDLIKVEGKSGGKMEDTELVRGIVLDKTFAHFQMPSEVKDARVAVVTFPFEPPKPKTKHKLDITSAEAYARLHATEQAYFEEMISKLKAVGATMVICQWGLDDEATHLLVRNKLPTVRWVGGVELELIAIATGARIVPRVSELAPEKLGRAG 555
L SKI+S+ ++ M+EIAV+AVLSVADL RKDVNF+LIKVEGK GG++EDT LV+GIVLDK AH QM E+KDA++A++T PFEPPKPKTKHK+DI+SAE+Y L+ EQ YF +M+ K K GAT+V+CQWG DDEATHLL+ NKLP VRWVGGVE+EL+AIAT ARIVPR EL KLG AG
Sbjct: 55 LGSKIISRFQKQMSEIAVNAVLSVADLKRKDVNFELIKVEGKVGGRLEDTMLVKGIVLDKEIAHSQMAKEIKDAKIAILTCPFEPPKPKTKHKIDISSAESYQNLYDREQKYFRDMVKKCKDSGATLVLCQWGFDDEATHLLMHNKLPAVRWVGGVEIELLAIATDARIVPRFEELDSSKLGTAG 239
BLAST of mRNA_M-pyrifera_M_contig116729.3463.1 vs. uniprot
Match: A0A7S1GCY1_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCY1_9STRA) HSP 1 Score: 268 bits (685), Expect = 1.100e-84 Identity = 134/185 (72.43%), Postives = 156/185 (84.32%), Query Frame = 1
Query: 1 LSSKILSKHKRAMAEIAVDAVLSVADLDRKDVNFDLIKVEGKSGGKMEDTELVRGIVLDKTFAHFQMPSEVKDARVAVVTFPFEPPKPKTKHKLDITSAEAYARLHATEQAYFEEMISKLKAVGATMVICQWGLDDEATHLLVRNKLPTVRWVGGVELELIAIATGARIVPRVSELAPEKLGRAG 555
LSSKI+++HKR MAEIAV AVLSVADL+RKDVNFD IKVEGK GGKMEDTELV GIVLDK F+H M ++ DAR+AV+T PFEPPKPKTKH LDITSA+ Y RL E+AYF+ MI ++K GA MVICQWG DDEA HLL+++KLP VRWVGGVELEL+AIAT ARI+PR SE++ EKLG+AG
Sbjct: 169 LSSKIVNRHKRKMAEIAVQAVLSVADLERKDVNFDHIKVEGKPGGKMEDTELVHGIVLDKEFSHPSMQKDIVDARMAVLTCPFEPPKPKTKHTLDITSADDYRRLAEQERAYFDTMIKQIKDSGANMVICQWGFDDEANHLLLQHKLPAVRWVGGVELELLAIATDARIIPRFSEVSAEKLGKAG 353 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116729.3463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig116729.3463.1 >prot_M-pyrifera_M_contig116729.3463.1 ID=prot_M-pyrifera_M_contig116729.3463.1|Name=mRNA_M-pyrifera_M_contig116729.3463.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp LSSKILSKHKRAMAEIAVDAVLSVADLDRKDVNFDLIKVEGKSGGKMEDTback to top mRNA from alignment at M-pyrifera_M_contig116729:3..557- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig116729.3463.1 ID=mRNA_M-pyrifera_M_contig116729.3463.1|Name=mRNA_M-pyrifera_M_contig116729.3463.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig116729:3..557- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig116729:3..557- >mRNA_M-pyrifera_M_contig116729.3463.1 ID=mRNA_M-pyrifera_M_contig116729.3463.1|Name=mRNA_M-pyrifera_M_contig116729.3463.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig116729:3..557- (Macrocystis pyrifera P11B4 male)back to top |