mRNA_M-pyrifera_M_contig116723.3462.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116723.3462.1
Unique NamemRNA_M-pyrifera_M_contig116723.3462.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116723.3462.1 vs. uniprot
Match: A0A7Y4WJI6_9BACT (Uncharacterized protein n=3 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y4WJI6_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 7.740e-12
Identity = 53/147 (36.05%), Postives = 73/147 (49.66%), Query Frame = 1 
Query:   76 LRRLALTPATFAAVGASTSETTEAVDDMTSWLDSNVGEIAAADAAVASTTQAWSAMRSKIQSGQATPQEIDGLASLESAMNAAKTARSSLFSSAVAATVADLSEGQRALAANVRENFHWRLPTHFLVTDRSEADWVALRDALDQKRI 516
            L R+ L   T AA G S  +    V  +    D      A+ D A  +  Q    +R  + SG+ T  ++  L   E+ + AA T R +  +    A +A +SEGQRAL   +R N  WRLPT +L  DR+EA WV LRD L  +RI
Sbjct:   46 LLRVGLGAETLAAAGISAEQVPALVAAVQ--RDYTAAATASRDEAFITAKQTHDRLRRLVTSGKGTRDDVVTLRGAEATLAAATTQRENHLAGLRTAALATVSEGQRALVNKIRANESWRLPTQYLAKDRTEAQWVELRDLLAAQRI 190
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BLAST of mRNA_M-pyrifera_M_contig116723.3462.1 vs. uniprot
Match: A0A6M8VY36_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A6M8VY36_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.420e-6
Identity = 42/145 (28.97%), Postives = 73/145 (50.34%), Query Frame = 1 
Query:   70 AALRRLALTPATFAAVGASTSETTEAVDDMTSWLD-SNVGEIAAADAAVASTTQAWSAMRSKIQSGQATPQEIDGLASLESAMNAAKTARSSLFSSAVAATVADLSEGQRALAANVRENFHWRLPTHFLVTDRSEADWVALRDAL 501
            A+L R+ +T  T AA G S ++ T    D  + L+ +N   +  AD  V         +   +++GQA  +++   ++ +S +  A + R  +        VADL  G+ AL   +R+N    +P  + VTDR++A W +LR+AL
Sbjct:   59 ASLARVGITATTLAAAGCSNADATNVGADAAAHLNITNWNALNDADTEVRDAAADVDRLGKLVRAGQADQEDLTAYSAAKSTLATATSTRDGILDRLYNTAVADLEAGEIALIETMRDNSDRPVPLQYTVTDRTDAQWTSLRNAL 203
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BLAST of mRNA_M-pyrifera_M_contig116723.3462.1 vs. uniprot
Match: A0A6M8VUU3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A6M8VUU3_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.950e-6
Identity = 42/145 (28.97%), Postives = 72/145 (49.66%), Query Frame = 1 
Query:   70 AALRRLALTPATFAAVGASTSETTEAVDDMTSWLDS-NVGEIAAADAAVASTTQAWSAMRSKIQSGQATPQEIDGLASLESAMNAAKTARSSLFSSAVAATVADLSEGQRALAANVRENFHWRLPTHFLVTDRSEADWVALRDAL 501
            A L R+ +T  T AA G S+ + T    D  + LD+ N   + +AD  V         +   +++GQA  +++   A+ +S +    + R  L  +   A VADL+ G+  L   +  N    +P  + V+DR++A W +LR+AL
Sbjct:   59 ATLARVGITAETLAAAGCSSGDATNVGADALAHLDTTNWNALVSADGDVRDAQAEVDRLGKLVRAGQADQEDLTAYATAKSTLATETSTRDGLLDALYDAAVADLTSGETTLLETMHGNSDRPVPLQYTVSDRTDAQWTSLRNAL 203
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116723.3462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7Y4WJI6_9BACT7.740e-1236.05Uncharacterized protein n=3 Tax=Planctomycetes bac... [more]
A0A6M8VY36_9BACT1.420e-628.97Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A6M8VUU3_9BACT1.950e-628.97Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116723contigM-pyrifera_M_contig116723:34..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size510
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.9068472-UTR-M-pyrifera_M_contig116723:33..481622815683.9068472-UTR-M-pyrifera_M_contig116723:33..48Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116723 34..48 +
1692277520.373537-UTR-M-pyrifera_M_contig116723:33..481692277520.373537-UTR-M-pyrifera_M_contig116723:33..48Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116723 34..48 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.9192362-CDS-M-pyrifera_M_contig116723:48..5581622815683.9192362-CDS-M-pyrifera_M_contig116723:48..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116723 49..558 +
1692277520.3935313-CDS-M-pyrifera_M_contig116723:48..5581692277520.3935313-CDS-M-pyrifera_M_contig116723:48..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116723 49..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116723.3462.1prot_M-pyrifera_M_contig116723.3462.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116723 49..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116723.3462.1

>prot_M-pyrifera_M_contig116723.3462.1 ID=prot_M-pyrifera_M_contig116723.3462.1|Name=mRNA_M-pyrifera_M_contig116723.3462.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
MWATASSSSATLLESDAGAALRRLALTPATFAAVGASTSETTEAVDDMTS
WLDSNVGEIAAADAAVASTTQAWSAMRSKIQSGQATPQEIDGLASLESAM
NAAKTARSSLFSSAVAATVADLSEGQRALAANVRENFHWRLPTHFLVTDR
SEADWVALRDALDQKRIAAK
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mRNA from alignment at M-pyrifera_M_contig116723:34..558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116723.3462.1 ID=mRNA_M-pyrifera_M_contig116723.3462.1|Name=mRNA_M-pyrifera_M_contig116723.3462.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig116723:34..558+ (Macrocystis pyrifera P11B4 male)
GCTGGCCCCGTGCTCATGTGGGCGACTGCTTCTTCCTCGAGCGCAACGCT
CCTCGAGTCCGATGCGGGCGCGGCCCTTCGCCGGCTGGCGCTGACCCCGG
CCACCTTCGCGGCGGTTGGAGCATCGACCTCGGAGACCACCGAAGCCGTA
GACGACATGACGTCCTGGCTGGACTCGAACGTGGGCGAGATCGCGGCTGC
GGACGCTGCTGTCGCAAGCACCACGCAAGCTTGGTCTGCGATGCGCTCCA
AGATCCAGAGTGGCCAAGCGACCCCGCAAGAGATCGACGGTCTCGCCAGC
CTCGAAAGTGCCATGAACGCGGCCAAAACGGCCCGTTCGAGCCTTTTCTC
GAGCGCGGTCGCCGCGACGGTCGCCGACCTCTCAGAGGGCCAGCGCGCAC
TGGCCGCGAACGTCCGCGAGAACTTCCACTGGAGGCTCCCCACCCATTTC
TTGGTGACCGATCGCAGCGAAGCGGACTGGGTCGCGCTGCGCGATGCGCT
TGACCAGAAACGCATCGCGGCCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116723:34..558+

>mRNA_M-pyrifera_M_contig116723.3462.1 ID=mRNA_M-pyrifera_M_contig116723.3462.1|Name=mRNA_M-pyrifera_M_contig116723.3462.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig116723:34..558+ (Macrocystis pyrifera P11B4 male)
ATGTGGGCGACTGCTTCTTCCTCGAGCGCAACGCTCCTCGAGTCCGATGC
GGGCGCGGCCCTTCGCCGGCTGGCGCTGACCCCGGCCACCTTCGCGGCGG
TTGGAGCATCGACCTCGGAGACCACCGAAGCCGTAGACGACATGACGTCC
TGGCTGGACTCGAACGTGGGCGAGATCGCGGCTGCGGACGCTGCTGTCGC
AAGCACCACGCAAGCTTGGTCTGCGATGCGCTCCAAGATCCAGAGTGGCC
AAGCGACCCCGCAAGAGATCGACGGTCTCGCCAGCCTCGAAAGTGCCATG
AACGCGGCCAAAACGGCCCGTTCGAGCCTTTTCTCGAGCGCGGTCGCCGC
GACGGTCGCCGACCTCTCAGAGGGCCAGCGCGCACTGGCCGCGAACGTCC
GCGAGAACTTCCACTGGAGGCTCCCCACCCATTTCTTGGTGACCGATCGC
AGCGAAGCGGACTGGGTCGCGCTGCGCGATGCGCTTGACCAGAAACGCAT
CGCGGCCAAGATGTGGGCGACTGCTTCTTCCTCGAGCGCAACGCTCCTCG
AGTCCGATGCGGGCGCGGCCCTTCGCCGGCTGGCGCTGACCCCGGCCACC
TTCGCGGCGGTTGGAGCATCGACCTCGGAGACCACCGAAGCCGTAGACGA
CATGACGTCCTGGCTGGACTCGAACGTGGGCGAGATCGCGGCTGCGGACG
CTGCTGTCGCAAGCACCACGCAAGCTTGGTCTGCGATGCGCTCCAAGATC
CAGAGTGGCCAAGCGACCCCGCAAGAGATCGACGGTCTCGCCAGCCTCGA
AAGTGCCATGAACGCGGCCAAAACGGCCCGTTCGAGCCTTTTCTCGAGCG
CGGTCGCCGCGACGGTCGCCGACCTCTCAGAGGGCCAGCGCGCACTGGCC
GCGAACGTCCGCGAGAACTTCCACTGGAGGCTCCCCACCCATTTCTTGGT
GACCGATCGCAGCGAAGCGGACTGGGTCGCGCTGCGCGATGCGCTTGACC
AGAAACGCATCGCGGCCAAG
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