mRNA_M-pyrifera_M_contig116684.3455.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116684.3455.1
Unique NamemRNA_M-pyrifera_M_contig116684.3455.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116684.3455.1 vs. uniprot
Match: A0A2E3MJM8_9GAMM (SPOR domain-containing protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MJM8_9GAMM)

HSP 1 Score: 105 bits (263), Expect = 1.120e-23
Identity = 54/148 (36.49%), Postives = 87/148 (58.78%), Query Frame = 1 
Query:   10 YQDNLKLHYDPFAGGQEIDPPYLPEQWLYLLDLLTQLSFHSHAILLVIAATGGGKTTLMKALLEKFGTGTGICQIQGDQTISVDFLRYLIAKHMGIAYAEDQTDQFNFQLNQKLEMMQQTRQQFHLLIDDAHLLPERTLAALIGLSAK 453
            Y     + YDPF+   +    Y+P  W   LDLL  LS  SHAIL ++  +G GKT+LM+  + + G  TGIC+I+ + +I    ++ L+A+H+G+   + ++  F   L ++L  MQ+ RQ + L++DDAH LP   L AL+ L+ +
Sbjct:    6 YWQYYGMLYDPFSRNPDGKEVYVPRTWEKQLDLLLHLSHTSHAILTIVGVSGIGKTSLMQEFICRVGDNTGICKIEANASIKAIVVKQLLARHLGLKTEDAESPNFESLLIEQLAKMQENRQHYLLVVDDAHRLPREALEALLALAPR 153
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BLAST of mRNA_M-pyrifera_M_contig116684.3455.1 vs. uniprot
Match: A0A2E2XKP5_9GAMM (SPOR domain-containing protein n=1 Tax=Cellvibrionaceae bacterium TaxID=2026723 RepID=A0A2E2XKP5_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 1.090e-9
Identity = 47/149 (31.54%), Postives = 72/149 (48.32%), Query Frame = 1 
Query:   10 YQDNLKLHYDPFAGG-QEIDPPYLPEQWLYLLDLLTQLSFHSHAILLVIAATGGGKTTLMKALLEKFGTGTGICQIQGDQTISVDFLRYLIAKHMGIAYAEDQTDQFN---FQLNQKLEMMQQTRQQFHLLIDDAHLLPERTLAALIGL 444
            Y + ++LH DPF+ G    D  YL      +LD +  LS  S ++L++  A G GKTTL + L +       +C I      S +    LI +H+ IA   +     +     +  +  +MQ   + F LL+DDAHLL +  L AL+ L
Sbjct:   48 YIEAMQLHADPFSSGLHSPDEDYLGAGRQEVLDQVDHLSEFSASVLVISGAAGSGKTTLFENLCQSLAAQWNLCSISAQVLSSTE----LIFEHLAIALQVEVASSASAGELMVAIRHRLMQDELEPFMLLVDDAHLLDDTVLGALMSL 192
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BLAST of mRNA_M-pyrifera_M_contig116684.3455.1 vs. uniprot
Match: A0A0Q9YTG8_9COXI (SPOR domain-containing protein n=1 Tax=Candidatus Berkiella aquae TaxID=295108 RepID=A0A0Q9YTG8_9COXI)

HSP 1 Score: 56.6 bits (135), Expect = 1.730e-6
Identity = 39/124 (31.45%), Postives = 62/124 (50.00%), Query Frame = 1 
Query:   73 YLPEQWLYLLDLLTQLSFHSHAILLVIAATGGGKTTLMKALLEKFGTGTGICQIQGDQTISVDFLRYLIAKHMGIAYAEDQTDQFNFQLNQKLEMMQQTRQQFHLLIDDAHLLPERTLAALIGL 444
            YL   W    +L+T L   S  ILL++     GK+T  +       T   IC  +  Q  +V+ L   +A+   +A+ ED T   +    + L+  +QT + + L+IDDAHLL +  +AAL+ L
Sbjct:   12 YLSSAWQQHAELITHLCHFSQNILLILGQGQSGKSTFFEYFTHLPSTSLKICAKKATQNTNVEALLQEVAQGFDLAW-EDATQTIDALNAKALDSYRQTNETWVLMIDDAHLLNDEQIAALLQL 134
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BLAST of mRNA_M-pyrifera_M_contig116684.3455.1 vs. uniprot
Match: A0A7C1US45_9GAMM (SPOR domain-containing protein n=1 Tax=Sedimenticola sp. TaxID=1940285 RepID=A0A7C1US45_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 5.140e-5
Identity = 42/139 (30.22%), Postives = 64/139 (46.04%), Query Frame = 1 
Query:   49 GGQEIDPP--YLPEQWLYLLDLLTQLSFHSHAILLVIAATGGGKTTLMKALLEKFGTGTGICQIQGDQTISVDFLRYLIAKHMGIAYAEDQTDQFNFQLNQKLEMMQQTRQQFHL---LIDDAHLLPERTLAALIGLSA 450
            G Q   PP  +   Q     DLL  L+ ++H I LV    G GKTTL+            +C++  +  +  + L   +A+H G+   +D+ ++        LE   + R    L    +DDAHLLP  T+AAL+ L A
Sbjct:   16 GPQGGKPPRFFSSPQLTQCTDLLRHLTENTHLIPLVTGGKGAGKTTLLFQFQSLAPENWSVCRVDANPMLHPEQLLSHLARHFGVPEEDDRLEEH------LLEHFSRLRHDGILPVVAVDDAHLLPPATVAALLQLHA 148
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116684.3455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E3MJM8_9GAMM1.120e-2336.49SPOR domain-containing protein n=1 Tax=Legionellal... [more]
A0A2E2XKP5_9GAMM1.090e-931.54SPOR domain-containing protein n=1 Tax=Cellvibrion... [more]
A0A0Q9YTG8_9COXI1.730e-631.45SPOR domain-containing protein n=1 Tax=Candidatus ... [more]
A0A7C1US45_9GAMM5.140e-530.22SPOR domain-containing protein n=1 Tax=Sedimentico... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116684contigM-pyrifera_M_contig116684:2..454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size453
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.6155264-CDS-M-pyrifera_M_contig116684:1..4541622815683.6155264-CDS-M-pyrifera_M_contig116684:1..454Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116684 2..454 -
1692277520.2744176-CDS-M-pyrifera_M_contig116684:1..4541692277520.2744176-CDS-M-pyrifera_M_contig116684:1..454Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116684 2..454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116684.3455.1prot_M-pyrifera_M_contig116684.3455.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116684 2..454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116684.3455.1

>prot_M-pyrifera_M_contig116684.3455.1 ID=prot_M-pyrifera_M_contig116684.3455.1|Name=mRNA_M-pyrifera_M_contig116684.3455.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
MSKYQDNLKLHYDPFAGGQEIDPPYLPEQWLYLLDLLTQLSFHSHAILLV
IAATGGGKTTLMKALLEKFGTGTGICQIQGDQTISVDFLRYLIAKHMGIA
YAEDQTDQFNFQLNQKLEMMQQTRQQFHLLIDDAHLLPERTLAALIGLSA
K
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mRNA from alignment at M-pyrifera_M_contig116684:2..454-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116684.3455.1 ID=mRNA_M-pyrifera_M_contig116684.3455.1|Name=mRNA_M-pyrifera_M_contig116684.3455.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig116684:2..454- (Macrocystis pyrifera P11B4 male)
ATGTCAAAATACCAAGATAATCTTAAGTTGCATTATGATCCGTTTGCAGG
TGGGCAGGAAATTGATCCGCCGTATTTACCAGAGCAGTGGCTCTATCTGC
TGGATCTTTTAACACAGCTAAGTTTCCATAGTCACGCCATTCTTTTAGTC
ATTGCCGCAACGGGGGGTGGCAAAACTACACTCATGAAGGCATTGCTGGA
AAAATTTGGTACCGGGACTGGGATTTGCCAAATCCAAGGTGACCAAACCA
TTAGTGTAGACTTTTTACGCTATTTGATTGCGAAGCATATGGGCATAGCC
TATGCGGAAGATCAAACTGATCAATTTAATTTCCAGTTAAATCAGAAACT
CGAAATGATGCAGCAGACGCGGCAACAATTTCATTTGCTCATTGATGATG
CACATCTGCTGCCTGAACGTACGTTAGCCGCTTTGATTGGATTGTCTGCA
AAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116684:2..454-

>mRNA_M-pyrifera_M_contig116684.3455.1 ID=mRNA_M-pyrifera_M_contig116684.3455.1|Name=mRNA_M-pyrifera_M_contig116684.3455.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig116684:2..454- (Macrocystis pyrifera P11B4 male)
ATGTCAAAATACCAAGATAATCTTAAGTTGCATTATGATCCGTTTGCAGG
TGGGCAGGAAATTGATCCGCCGTATTTACCAGAGCAGTGGCTCTATCTGC
TGGATCTTTTAACACAGCTAAGTTTCCATAGTCACGCCATTCTTTTAGTC
ATTGCCGCAACGGGGGGTGGCAAAACTACACTCATGAAGGCATTGCTGGA
AAAATTTGGTACCGGGACTGGGATTTGCCAAATCCAAGGTGACCAAACCA
TTAGTGTAGACTTTTTACGCTATTTGATTGCGAAGCATATGGGCATAGCC
TATGCGGAAGATCAAACTGATCAATTTAATTTCCAGTTAAATCAGAAACT
CGAAATGATGCAGCAGACGCGGCAACAATTTCATTTGCTCATTGATGATG
CACATCTGCTGCCTGAACGTACGTTAGCCGCTTTGATTGGATTGTCTGCA
AAAATGTCAAAATACCAAGATAATCTTAAGTTGCATTATGATCCGTTTGC
AGGTGGGCAGGAAATTGATCCGCCGTATTTACCAGAGCAGTGGCTCTATC
TGCTGGATCTTTTAACACAGCTAAGTTTCCATAGTCACGCCATTCTTTTA
GTCATTGCCGCAACGGGGGGTGGCAAAACTACACTCATGAAGGCATTGCT
GGAAAAATTTGGTACCGGGACTGGGATTTGCCAAATCCAAGGTGACCAAA
CCATTAGTGTAGACTTTTTACGCTATTTGATTGCGAAGCATATGGGCATA
GCCTATGCGGAAGATCAAACTGATCAATTTAATTTCCAGTTAAATCAGAA
ACTCGAAATGATGCAGCAGACGCGGCAACAATTTCATTTGCTCATTGATG
ATGCACATCTGCTGCCTGAACGTACGTTAGCCGCTTTGATTGGATTGTCT
GCAAAA
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