mRNA_M-pyrifera_M_contig116679.3453.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116679.3453.1
Unique NamemRNA_M-pyrifera_M_contig116679.3453.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116679.3453.1 vs. uniprot
Match: A0A7S1R2H0_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1R2H0_NEODS)

HSP 1 Score: 61.6 bits (148), Expect = 4.570e-8
Identity = 47/116 (40.52%), Postives = 62/116 (53.45%), Query Frame = 1 
Query:  121 LRTLCLKGATLRSADVLLAVAAACPQLRELDLRRCHPVDGAALAQVLARCSRLEAVRFSNC-ESVGDGHVAALLQ-CPRLAVLQLKGCPRVTDEGFEAAASAAAELQELDLRGTAV 462
            L +L L G      DVLLAVAA+CP LR L +R    V   ALA +  RC+RL  +  + C  +  +  VAA+   CP L VL L  C  VT    +A +S  A+L+ LD+  T V
Sbjct:  203 LESLNLNGVVSVRDDVLLAVAASCPNLRCLTMRDMRSVSPRALAAI-TRCARLTHLDVTCCWANFSEDDVAAIGSGCPSLRVLILGRCHGVTASSLDAISSGCADLRRLDVNHTEV 317
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116679.3453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1R2H0_NEODS4.570e-840.52Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116679contigM-pyrifera_M_contig116679:19..510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.5489485-CDS-M-pyrifera_M_contig116679:18..5101622815683.5489485-CDS-M-pyrifera_M_contig116679:18..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116679 19..510 -
1692277520.244805-CDS-M-pyrifera_M_contig116679:18..5101692277520.244805-CDS-M-pyrifera_M_contig116679:18..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116679 19..510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116679.3453.1prot_M-pyrifera_M_contig116679.3453.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116679 19..510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116679.3453.1

>prot_M-pyrifera_M_contig116679.3453.1 ID=prot_M-pyrifera_M_contig116679.3453.1|Name=mRNA_M-pyrifera_M_contig116679.3453.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
LTDSVLQRLLSGSQPEALDLSRYAGGGRVLARLLEQCGGGLRTLCLKGAT
LRSADVLLAVAAACPQLRELDLRRCHPVDGAALAQVLARCSRLEAVRFSN
CESVGDGHVAALLQCPRLAVLQLKGCPRVTDEGFEAAASAAAELQELDLR
GTAVSAVCVEATVA
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mRNA from alignment at M-pyrifera_M_contig116679:19..510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116679.3453.1 ID=mRNA_M-pyrifera_M_contig116679.3453.1|Name=mRNA_M-pyrifera_M_contig116679.3453.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig116679:19..510- (Macrocystis pyrifera P11B4 male)
CTCACCGACTCGGTGCTGCAGCGCCTCCTCAGTGGCTCCCAGCCAGAGGC
GCTGGACCTGAGCCGCTACGCGGGCGGCGGGCGTGTGCTGGCGCGGCTGC
TGGAGCAGTGTGGCGGTGGCCTGCGCACCCTCTGCCTCAAGGGCGCGACC
CTGCGCAGCGCAGACGTGCTGCTGGCCGTGGCCGCCGCCTGCCCGCAGCT
GCGCGAGCTGGACCTCCGCCGCTGCCACCCCGTCGACGGCGCGGCGCTGG
CGCAGGTGCTGGCGCGGTGCAGCCGCCTCGAGGCCGTGCGCTTCTCCAAC
TGCGAGAGCGTGGGCGACGGCCACGTGGCGGCGCTGCTGCAGTGCCCGCG
CCTCGCCGTCCTCCAGCTCAAGGGCTGCCCGCGCGTCACCGATGAGGGCT
TCGAGGCGGCGGCGAGCGCGGCGGCGGAGCTGCAGGAGCTCGACCTCCGC
GGCACCGCCGTCAGCGCAGTGTGCGTGGAGGCGACGGTCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116679:19..510-

>mRNA_M-pyrifera_M_contig116679.3453.1 ID=mRNA_M-pyrifera_M_contig116679.3453.1|Name=mRNA_M-pyrifera_M_contig116679.3453.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig116679:19..510- (Macrocystis pyrifera P11B4 male)
CTCACCGACTCGGTGCTGCAGCGCCTCCTCAGTGGCTCCCAGCCAGAGGC
GCTGGACCTGAGCCGCTACGCGGGCGGCGGGCGTGTGCTGGCGCGGCTGC
TGGAGCAGTGTGGCGGTGGCCTGCGCACCCTCTGCCTCAAGGGCGCGACC
CTGCGCAGCGCAGACGTGCTGCTGGCCGTGGCCGCCGCCTGCCCGCAGCT
GCGCGAGCTGGACCTCCGCCGCTGCCACCCCGTCGACGGCGCGGCGCTGG
CGCAGGTGCTGGCGCGGTGCAGCCGCCTCGAGGCCGTGCGCTTCTCCAAC
TGCGAGAGCGTGGGCGACGGCCACGTGGCGGCGCTGCTGCAGTGCCCGCG
CCTCGCCGTCCTCCAGCTCAAGGGCTGCCCGCGCGTCACCGATGAGGGCT
TCGAGGCGGCGGCGAGCGCGGCGGCGGAGCTGCAGGAGCTCGACCTCCGC
GGCACCGCCGTCAGCGCAGTGTGCGTGGAGGCGACGGTCGCCCTCACCGA
CTCGGTGCTGCAGCGCCTCCTCAGTGGCTCCCAGCCAGAGGCGCTGGACC
TGAGCCGCTACGCGGGCGGCGGGCGTGTGCTGGCGCGGCTGCTGGAGCAG
TGTGGCGGTGGCCTGCGCACCCTCTGCCTCAAGGGCGCGACCCTGCGCAG
CGCAGACGTGCTGCTGGCCGTGGCCGCCGCCTGCCCGCAGCTGCGCGAGC
TGGACCTCCGCCGCTGCCACCCCGTCGACGGCGCGGCGCTGGCGCAGGTG
CTGGCGCGGTGCAGCCGCCTCGAGGCCGTGCGCTTCTCCAACTGCGAGAG
CGTGGGCGACGGCCACGTGGCGGCGCTGCTGCAGTGCCCGCGCCTCGCCG
TCCTCCAGCTCAAGGGCTGCCCGCGCGTCACCGATGAGGGCTTCGAGGCG
GCGGCGAGCGCGGCGGCGGAGCTGCAGGAGCTCGACCTCCGCGGCACCGC
CGTCAGCGCAGTGTGCGTGGAGGCGACGGTCGCC
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