mRNA_M-pyrifera_M_contig116560.3445.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116560.3445.1
Unique NamemRNA_M-pyrifera_M_contig116560.3445.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116560.3445.1 vs. uniprot
Match: A0A7S2XMW5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMW5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.450e-17
Identity = 40/89 (44.94%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    1 GQRRLRRILRAWSALDPSVGYCQGMSFLCAALLCTGLQEESAFWVFVSLMYD--CGLVRLYEDGLAGTRAMMRLVTELLRRHFPRLASH 261
            GQ  LRR+LRA+SA D  VGYCQGM+F+ AA+  T + EE +FW+ VS+M D  C +  L+ +G+AG   ++ +  +L+ +  P+LA+H
Sbjct:  161 GQASLRRVLRAYSAYDAEVGYCQGMNFI-AAMFITFMSEEESFWLLVSVMNDPPCHMRALFGEGMAGAHRVLYVADKLIGKFLPKLANH 248
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BLAST of mRNA_M-pyrifera_M_contig116560.3445.1 vs. uniprot
Match: A0A7S4HJ54_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HJ54_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.950e-16
Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 GQRRLRRILRAWSALDPSVGYCQGMSFLCAALLCTGLQEESAFWVFVSLMYD--CGLVRLYEDGLAGTRAMMRLVTELLRRHFPRLASHL 264
            GQ  LRR+LRA++A DP VGYCQGM+F+ AA+  T + EE AFW+ V +M +  C +  L+ +G+A    ++ +   L+R+  P+LA HL
Sbjct:   56 GQASLRRVLRAYAAHDPDVGYCQGMNFI-AAMFLTFMSEEEAFWLLVHVMNEEPCRMRGLFGEGMAHAHRVLHVAEGLIRQFLPKLAGHL 144
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BLAST of mRNA_M-pyrifera_M_contig116560.3445.1 vs. uniprot
Match: A0A7S1GDG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDG0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.340e-16
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    1 GQRRLRRILRAWSALDPSVGYCQGMSFLCAALLCTGLQEESAFWVFVSLMYDCGLVRLYEDGLAGTRAMMRLVTELLRRHFPRLASHL 264
            G   L R++ A++  DP++GY QGM FL  ALL TG+ EE+AFWVFVSLM   GL  LY  G      + R V +++R   P LAS L
Sbjct:  116 GAAALARMMTAYAHYDPALGYTQGMCFLAGALLLTGMAEETAFWVFVSLMTRFGLAGLYRPGFGLLGKVHRGVDDIVRTRMPALASRL 203
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BLAST of mRNA_M-pyrifera_M_contig116560.3445.1 vs. uniprot
Match: I0YKN8_COCSC (TBC-domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YKN8_COCSC)

HSP 1 Score: 75.1 bits (183), Expect = 5.880e-14
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    1 GQRRLRRILRAWSALDPSVGYCQGMSFLCAALLCTGLQ--EESAFWVFVSLMYDCGLVR--LYEDGLAGTRAMMRLVTELLRRHFPRLASHL 264
            GQ  LRR+L A+SA  P+VGYCQGM++L AA+L   L+  EE++FW+ V+L+ D G++   LY   L G    MR + EL+    PRL  HL
Sbjct:  124 GQAALRRVLLAFSAHQPAVGYCQGMNYL-AAMLLLALERSEENSFWLLVALIDDGGILYQGLYSQNLVGAHVEMRSLQELVDAKLPRLRQHL 214
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BLAST of mRNA_M-pyrifera_M_contig116560.3445.1 vs. uniprot
Match: A0A2D4CH29_PYTIN (Rab-GAP TBC domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CH29_PYTIN)

HSP 1 Score: 75.1 bits (183), Expect = 7.320e-14
Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    4 QRRLRRILRAWSALDPSVGYCQGMSFLCAALLCTGLQEESAFWVFVSLMYDCGLVRLYEDGLAGTRAMMRLVTELLRRHFPRLASHL 264
            Q  LRR+L+A+   +P++GYCQ M+FL A LL   L+EE AFWV V+++ D  L + +   + G+RA +R+ T+L+ +  P LA HL
Sbjct:  243 QHELRRVLQAYCLRNPTIGYCQSMNFLGAVLL-QHLEEEEAFWVLVAMLEDL-LPQFHSHSMLGSRAELRVFTDLVHQKLPALAQHL 327
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BLAST of mRNA_M-pyrifera_M_contig116560.3445.1 vs. uniprot
Match: A0A8J9SHI4_9CHLO (TBC1 domain family member 2A n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SHI4_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 2.890e-13
Identity = 42/90 (46.67%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:    1 GQRRLRRILRAWSALDPSVGYCQGMSFLCAALLCT-GLQEESAFWVFVSLMYDCGLVR--LYEDGLAGTRAMMRLVTELLRRHFPRLASH 261
            GQ  LRR+L A+SA  P VGYCQ M++L A LL      EE AFWV VSL+ D G++   +Y   L G    MR + EL+    PRL  H
Sbjct:  124 GQAALRRVLLAFSAHQPQVGYCQSMNYLAAMLLLALDRSEEKAFWVLVSLIDDGGILYQGMYSQNLVGAHVEMRSLQELVVAKLPRLHQH 213
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BLAST of mRNA_M-pyrifera_M_contig116560.3445.1 vs. uniprot
Match: A0A7S0UNG3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0UNG3_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 4.080e-13
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 GQRRLRRILRAWSALDPSVGYCQGMSFLCAALLCTGLQE-ESAFWVFVSLMYDCGLVRLYEDGLAGTRAMMRLVTELLRRHFPRLASHL 264
            GQ RLR++LRA+S  +PSVGYCQG++FL A L+ T  +  E AFW+ + ++        Y  GL G    MR ++ LL R  P L+ HL
Sbjct:  131 GQVRLRKVLRAFSQQNPSVGYCQGLNFLAAFLMLTQSRSAERAFWILICIVDRLLYPGTYASGLEGCHVEMRTLSSLLDRRKPALSKHL 219
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BLAST of mRNA_M-pyrifera_M_contig116560.3445.1 vs. uniprot
Match: A0A8K0KFV4_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KFV4_LADFU)

HSP 1 Score: 69.3 bits (168), Expect = 4.610e-13
Identity = 38/87 (43.68%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:    1 GQRRLRRILRAWSALDPSVGYCQGMSFLCAALLCTGLQEESAFWVFVSLMYDCGLVRLYEDGLAGTRAMMRLVTELLRRHFPRLASH 261
            GQ  L RI +A++  D  VGYCQG+SFL AALL   + EE AF V V LM+D GL  L++DG       +  +  L+    P L  H
Sbjct:    2 GQDSLYRISKAYAVYDEEVGYCQGLSFLAAALL-LHMPEEQAFCVLVKLMFDYGLRDLFKDGFENLYMRLYQLNRLMEEQLPELWQH 87
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BLAST of mRNA_M-pyrifera_M_contig116560.3445.1 vs. uniprot
Match: A0A7S0EXW2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EXW2_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 5.400e-13
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 GQRRLRRILRAWSALDPSVGYCQGMSFLCAALLCTGLQEESAFWVFVSLMYDCGLVRLYEDGLAGTRAMMRLVTELLRRHFPRLASH 261
            GQ  L R+LRA++A +P++GY QGMS   A LL   + EE AFWVF +LM  CGL+ L+  G            +L ++  P+LA+H
Sbjct:   21 GQASLTRLLRAYAAYNPTLGYTQGMSSYAAVLLLY-MSEEDAFWVFATLMEHCGLLGLFAPGFPLLHTYYDRWMQLFKKRLPKLAAH 106
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BLAST of mRNA_M-pyrifera_M_contig116560.3445.1 vs. uniprot
Match: A0A267H4H7_9PLAT (Rab-GAP TBC domain-containing protein n=7 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267H4H7_9PLAT)

HSP 1 Score: 72.4 bits (176), Expect = 6.680e-13
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   13 LRRILRAWSALDPSVGYCQGMSFLCAALLCTGLQEESAFWVFVSLMYDCGLVRLYEDGLAGTRAMMRLVTELLRRHFPRLASH 261
            L R+ +A++  DP+VGYCQGMSFL AALL   L EE AF + V +MYD G+ +++  G  G +     +  LL++H P + SH
Sbjct:  562 LARLSKAYALYDPAVGYCQGMSFLGAALLLQ-LPEEEAFELLVQIMYDYGVRKMFTAGFEGLQLRFYQLDALLKQHCPEVFSH 643
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116560.3445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XMW5_9STRA3.450e-1744.94Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4HJ54_9STRA1.950e-1644.44Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1GDG0_9STRA2.340e-1647.73Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
I0YKN8_COCSC5.880e-1446.74TBC-domain-containing protein n=1 Tax=Coccomyxa su... [more]
A0A2D4CH29_PYTIN7.320e-1443.68Rab-GAP TBC domain-containing protein n=2 Tax=Pyth... [more]
A0A8J9SHI4_9CHLO2.890e-1346.67TBC1 domain family member 2A n=1 Tax=Coccomyxa sp.... [more]
A0A7S0UNG3_9CHLO4.080e-1343.82Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]
A0A8K0KFV4_LADFU4.610e-1343.68Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A7S0EXW2_9EUKA5.400e-1342.53Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A267H4H7_9PLAT6.680e-1344.58Rab-GAP TBC domain-containing protein n=7 Tax=Macr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116560contigM-pyrifera_M_contig116560:26..289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.9
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog88036.EFJ10335
KEGG koko:K20165
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006810,GO:0006886,GO:0008047,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0017016,GO:0017137,GO:0019899,GO:0030054,GO:0030234,GO:0030695,GO:0031267,GO:0031338,GO:0031410,GO:0031982,GO:0032879,GO:0033036,GO:0033043,GO:0034613,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0045296,GO:0046907,GO:0050789,GO:0050790,GO:0050794,GO:0050839,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060589,GO:0060627,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0090630,GO:0097708,GO:0098772
EggNOG free text desc.TBC1 domain family member
EggNOG OGs37HWR@33090,3GEW1@35493,COG5210@1,KOG2058@2759
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.2440612-CDS-M-pyrifera_M_contig116560:25..2891622815683.2440612-CDS-M-pyrifera_M_contig116560:25..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116560 26..289 -
1692277520.1231668-CDS-M-pyrifera_M_contig116560:25..2891692277520.1231668-CDS-M-pyrifera_M_contig116560:25..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116560 26..289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116560.3445.1prot_M-pyrifera_M_contig116560.3445.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116560 26..289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116560.3445.1

>prot_M-pyrifera_M_contig116560.3445.1 ID=prot_M-pyrifera_M_contig116560.3445.1|Name=mRNA_M-pyrifera_M_contig116560.3445.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
GQRRLRRILRAWSALDPSVGYCQGMSFLCAALLCTGLQEESAFWVFVSLM
YDCGLVRLYEDGLAGTRAMMRLVTELLRRHFPRLASHL
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mRNA from alignment at M-pyrifera_M_contig116560:26..289-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116560.3445.1 ID=mRNA_M-pyrifera_M_contig116560.3445.1|Name=mRNA_M-pyrifera_M_contig116560.3445.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig116560:26..289- (Macrocystis pyrifera P11B4 male)
GGGCAACGTCGATTAAGGAGAATATTGCGTGCCTGGAGTGCCCTAGATCC
AAGTGTTGGGTATTGCCAAGGAATGAGCTTTCTTTGTGCTGCTTTATTGT
GCACTGGGTTGCAAGAGGAAAGTGCCTTTTGGGTATTTGTGTCATTAATG
TACGATTGTGGCCTTGTGAGGTTATATGAAGATGGCTTGGCGGGGACAAG
GGCAATGATGCGCCTTGTTACAGAATTGCTCCGTCGCCATTTTCCAAGAT
TGGCATCTCATCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116560:26..289-

>mRNA_M-pyrifera_M_contig116560.3445.1 ID=mRNA_M-pyrifera_M_contig116560.3445.1|Name=mRNA_M-pyrifera_M_contig116560.3445.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig116560:26..289- (Macrocystis pyrifera P11B4 male)
GGGCAACGTCGATTAAGGAGAATATTGCGTGCCTGGAGTGCCCTAGATCC
AAGTGTTGGGTATTGCCAAGGAATGAGCTTTCTTTGTGCTGCTTTATTGT
GCACTGGGTTGCAAGAGGAAAGTGCCTTTTGGGTATTTGTGTCATTAATG
TACGATTGTGGCCTTGTGAGGTTATATGAAGATGGCTTGGCGGGGACAAG
GGCAATGATGCGCCTTGTTACAGAATTGCTCCGTCGCCATTTTCCAAGAT
TGGCATCTCATCTCGGGCAACGTCGATTAAGGAGAATATTGCGTGCCTGG
AGTGCCCTAGATCCAAGTGTTGGGTATTGCCAAGGAATGAGCTTTCTTTG
TGCTGCTTTATTGTGCACTGGGTTGCAAGAGGAAAGTGCCTTTTGGGTAT
TTGTGTCATTAATGTACGATTGTGGCCTTGTGAGGTTATATGAAGATGGC
TTGGCGGGGACAAGGGCAATGATGCGCCTTGTTACAGAATTGCTCCGTCG
CCATTTTCCAAGATTGGCATCTCATCTC
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