mRNA_M-pyrifera_M_contig11655.3443.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig11655.3443.1 vs. uniprot
Match: D8LI19_ECTSI (Circadian RNA-binding protein CHLAMY 1 subunit C1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI19_ECTSI) HSP 1 Score: 282 bits (722), Expect = 2.500e-88 Identity = 150/232 (64.66%), Postives = 177/232 (76.29%), Query Frame = 2
Query: 203 VDHSVIKKWVLEVATRKRRTTLDEIARYFHGRVDTDVIDSYMEVFGNNCRDTVVQCAEFLNIVVPPVREEAEEGVNDELVAGAFAARERVKQGDYDFVEHPLERRANEAKQNDCKDLKVLQAILDEAKGQPGLAGVRKMLNKMVKRIKAVQEEQKLLRKEQTHGMKREIS-QKLHPAYANKEQTFTSFQPPNISFDKEPDAVIDIPPNIVGWIIGKAGVRINELQQRTKAAV 895
+DHSVIK WVLEVA+R+ T DEI RYFHGRVD DVID Y E F N+ R TV+QCAEFLNI VPP EE E+ +N ELVAGAF A+ER K GDY EHPLERRANEAKQNDCKDL VL AIL EA G+ GL ++KM+ KM+KRI +EEQK LR + KRE+S QKLHPAYA+K+ TF+SF P I DK PDA++DIPPN+VGW+IGK G RIN++Q +T AA+
Sbjct: 1 MDHSVIKNWVLEVASRRVLATSDEIKRYFHGRVDEDVIDFYNEEFSNS-RATVIQCAEFLNIEVPPEDEEEEDDINSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKMIKRINETREEQKQLRTQSLLKPKREVSSQKLHPAYASKKPTFSSFAPSTIP-DKVPDAMLDIPPNVVGWVIGKNGARINDIQSKTNAAM 230
BLAST of mRNA_M-pyrifera_M_contig11655.3443.1 vs. uniprot
Match: A0A6H5KMM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM6_9PHAE) HSP 1 Score: 269 bits (687), Expect = 1.780e-80 Identity = 154/272 (56.62%), Postives = 181/272 (66.54%), Query Frame = 2
Query: 188 PGLLVVDHSVIKKWVLEVATRKRRTTLDEIARYFHGRVDTDVIDSYMEVFGNNCRDTVVQCAEFLNIVVPP---------VREEAEEG--------------------------VNDELVAGAFAARERVKQGDYDFVEHPLERRANEAKQNDCKDLKVLQAILDEAKGQPGLAGVRKMLNKMVKRIKAVQEEQKLLRKEQTHGMKREIS-QKLHPAYANKEQTFTSFQPPNISFDKEPDAVIDIPPNIVGWIIGKAGVRINELQQRTKAAV 895
P +DHSVIK+WVLEVA+R+ T DEI RYFHGRVD DVID Y E F +NCR TV+QCAEFLNI VPP RE ++G +N ELVAGAF A+ER K GDY EHPLERRANEAKQNDCKDL VL AIL EA G+ GL ++KM+ KMVKRI +EEQK LR + KRE+S QKLHPAYA+KE TF+SF P I DK PDA++DIPPN+VGW+IGK G RIN++Q +T AA+
Sbjct: 395 PSTSEMDHSVIKEWVLEVASRRVLATPDEIKRYFHGRVDEDVIDFYNEEF-SNCRATVIQCAEFLNIEVPPDDQISRGDLKREPEDQGARGGGVXXXXXXXXXXXXXXXXXXXXINSELVAGAFGAKERTKHGDYSAFEHPLERRANEAKQNDCKDLNVLNAILQEAHGEVGLGKMKKMIKKMVKRINETREEQKKLRTQSVVKPKREVSAQKLHPAYASKEPTFSSFAPSTIP-DKVPDAMLDIPPNVVGWVIGKNGARINDIQSKTNAAM 664 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11655.3443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11655.3443.1 >prot_M-pyrifera_M_contig11655.3443.1 ID=prot_M-pyrifera_M_contig11655.3443.1|Name=mRNA_M-pyrifera_M_contig11655.3443.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=239bp MGRPGLLVVDHSVIKKWVLEVATRKRRTTLDEIARYFHGRVDTDVIDSYMback to top mRNA from alignment at M-pyrifera_M_contig11655:2782..9639- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig11655.3443.1 ID=mRNA_M-pyrifera_M_contig11655.3443.1|Name=mRNA_M-pyrifera_M_contig11655.3443.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6858bp|location=Sequence derived from alignment at M-pyrifera_M_contig11655:2782..9639- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig11655:2782..9639- >mRNA_M-pyrifera_M_contig11655.3443.1 ID=mRNA_M-pyrifera_M_contig11655.3443.1|Name=mRNA_M-pyrifera_M_contig11655.3443.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1434bp|location=Sequence derived from alignment at M-pyrifera_M_contig11655:2782..9639- (Macrocystis pyrifera P11B4 male)back to top |