mRNA_M-pyrifera_M_contig116549.3442.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116549.3442.1
Unique NamemRNA_M-pyrifera_M_contig116549.3442.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116549.3442.1 vs. uniprot
Match: A0A3N7C9V7_9BURK (Non-specific serine/threonine protein kinase n=2 Tax=Paucibacter sp. KBW04 TaxID=2153361 RepID=A0A3N7C9V7_9BURK)

HSP 1 Score: 62.0 bits (149), Expect = 6.810e-9
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:    1 AREVFAQARRFLEERLAREPGDPEWRFELGQVAFYQGQLERDAGDMAAARGHWELYAEISRELADAAPDDVLFQDERAYAETNLGVLALER 273
            A ++F  A +   E LAR+P D    F+  Q  ++     R  GD+ AA G +E Y +++ +L    PD + +Q ERA AE+N+G+L LER
Sbjct:  519 AEQLFKHAAQSTAELLARDPNDETRIFDHAQSVYWMAYAARRRGDLQAAAGQFEGYRQLATQLTTLNPDKLEWQIERAAAESNVGILQLER 609
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BLAST of mRNA_M-pyrifera_M_contig116549.3442.1 vs. uniprot
Match: F4QS64_9CAUL (DUF1863 domain-containing protein n=1 Tax=Asticcacaulis biprosthecum C19 TaxID=715226 RepID=F4QS64_9CAUL)

HSP 1 Score: 58.5 bits (140), Expect = 1.060e-7
Identity = 32/89 (35.96%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:    1 AREVFAQARRFLEERLAREPGDPEWRFELGQVAFYQGQLERDAGDMAAARGHWELYAEISRELADAAPDDVLFQDERAYAETNLGVLAL 267
            AR    +A R     LAR P  P+  F+  Q  ++QG L+    D   A  HW+ Y  ++++L    PD++ +Q E  YAE+NL  LAL
Sbjct:  287 ARADIDEAYRTTSASLARHPKAPKQIFDHAQSEYWQGYLDYVQHDQRGAAPHWQAYLRLAKQLVSQDPDNITWQRELGYAESNLCTLAL 375
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BLAST of mRNA_M-pyrifera_M_contig116549.3442.1 vs. uniprot
Match: A0A5C7RTZ6_9GAMM (OmpR/PhoB-type domain-containing protein n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A5C7RTZ6_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 1.540e-7
Identity = 37/110 (33.64%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:    1 AREVFAQARRFLEERLAREPGDPEWRFELGQVAFYQGQLERDAGDMAAARGHWELYAEISRELADAAPDDVLFQDERAYAETNLGVLALERASRGEPAYEAALEHFEAAL 330
            +++  A+A   +   L+ +P   E  FELGQ+AF+QGQ+ R+      +   W+ Y  +S  L   AP +  +Q E +YA +NLG L  ER +      +AAL  F A++
Sbjct:  719 SKQFLARANGIISLVLSAQPDSQEAIFELGQIAFWQGQIARNNKKAKKSYFKWKRYHRVSNRLVRVAPKNTDWQKELSYALSNLGTLERERGND-----QAALRLFSASV 823
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BLAST of mRNA_M-pyrifera_M_contig116549.3442.1 vs. uniprot
Match: H8FKS5_XANCI (Tetratricopeptide repeat family protein n=2 Tax=Xanthomonas TaxID=338 RepID=H8FKS5_XANCI)

HSP 1 Score: 51.6 bits (122), Expect = 3.000e-5
Identity = 31/88 (35.23%), Postives = 42/88 (47.73%), Query Frame = 1 
Query:    1 AREVFAQARRFLEERLAREPGDPEWRFELGQVAFYQGQLERDAGDMAAARGHWELYAEISRELADAAPDDVLFQDERAYAETNLGVLA 264
            A+  F +A    E+   + P   E   E+GQ A++ G +   +     AR HW  Y   S  L   APDD  +Q E +YA  NLG LA
Sbjct:  443 AQAAFTRAASTAEQAWTQAPEAVEAHAEIGQTAYWLGNMAYRSKQFPLARTHWSQYLAASEWLVRTAPDDPHWQLELSYALNNLGTLA 530
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116549.3442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A3N7C9V7_9BURK6.810e-937.36Non-specific serine/threonine protein kinase n=2 T... [more]
F4QS64_9CAUL1.060e-735.96DUF1863 domain-containing protein n=1 Tax=Asticcac... [more]
A0A5C7RTZ6_9GAMM1.540e-733.64OmpR/PhoB-type domain-containing protein n=1 Tax=X... [more]
H8FKS5_XANCI3.000e-535.23Tetratricopeptide repeat family protein n=2 Tax=Xa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116549contigM-pyrifera_M_contig116549:137..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score79.3
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog1161401.ASJA01000002_gene2648
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MTH538 TIR-like domain (DUF1863)
EggNOG OGs1N06S@1224,2TQVV@28211,43ZIP@69657,COG0457@1,COG0457@2
COG Functional cat.S
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.0541456-CDS-M-pyrifera_M_contig116549:136..4661622815683.0541456-CDS-M-pyrifera_M_contig116549:136..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116549 137..466 -
1692277519.976682-CDS-M-pyrifera_M_contig116549:136..4661692277519.976682-CDS-M-pyrifera_M_contig116549:136..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116549 137..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116549.3442.1prot_M-pyrifera_M_contig116549.3442.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116549 137..466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116549.3442.1

>prot_M-pyrifera_M_contig116549.3442.1 ID=prot_M-pyrifera_M_contig116549.3442.1|Name=mRNA_M-pyrifera_M_contig116549.3442.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
AREVFAQARRFLEERLAREPGDPEWRFELGQVAFYQGQLERDAGDMAAAR
GHWELYAEISRELADAAPDDVLFQDERAYAETNLGVLALERASRGEPAYE
AALEHFEAAL
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mRNA from alignment at M-pyrifera_M_contig116549:137..466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116549.3442.1 ID=mRNA_M-pyrifera_M_contig116549.3442.1|Name=mRNA_M-pyrifera_M_contig116549.3442.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig116549:137..466- (Macrocystis pyrifera P11B4 male)
GCGCGCGAGGTCTTCGCCCAGGCGCGGCGCTTCCTCGAGGAGCGCTTGGC
GCGCGAGCCGGGCGATCCGGAGTGGCGCTTCGAGCTGGGGCAGGTGGCGT
TCTATCAGGGGCAGCTCGAGCGCGACGCGGGCGACATGGCGGCGGCGCGC
GGGCACTGGGAGCTGTATGCGGAGATCAGTCGCGAGCTCGCGGACGCGGC
GCCGGACGACGTGCTGTTCCAGGACGAGCGGGCCTATGCCGAGACGAACC
TGGGGGTCCTGGCGCTCGAGCGCGCGAGCCGCGGCGAGCCGGCGTACGAG
GCGGCGCTCGAGCACTTCGAGGCGGCGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116549:137..466-

>mRNA_M-pyrifera_M_contig116549.3442.1 ID=mRNA_M-pyrifera_M_contig116549.3442.1|Name=mRNA_M-pyrifera_M_contig116549.3442.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig116549:137..466- (Macrocystis pyrifera P11B4 male)
GCGCGCGAGGTCTTCGCCCAGGCGCGGCGCTTCCTCGAGGAGCGCTTGGC
GCGCGAGCCGGGCGATCCGGAGTGGCGCTTCGAGCTGGGGCAGGTGGCGT
TCTATCAGGGGCAGCTCGAGCGCGACGCGGGCGACATGGCGGCGGCGCGC
GGGCACTGGGAGCTGTATGCGGAGATCAGTCGCGAGCTCGCGGACGCGGC
GCCGGACGACGTGCTGTTCCAGGACGAGCGGGCCTATGCCGAGACGAACC
TGGGGGTCCTGGCGCTCGAGCGCGCGAGCCGCGGCGAGCCGGCGTACGAG
GCGGCGCTCGAGCACTTCGAGGCGGCGCTCGCGCGCGAGGTCTTCGCCCA
GGCGCGGCGCTTCCTCGAGGAGCGCTTGGCGCGCGAGCCGGGCGATCCGG
AGTGGCGCTTCGAGCTGGGGCAGGTGGCGTTCTATCAGGGGCAGCTCGAG
CGCGACGCGGGCGACATGGCGGCGGCGCGCGGGCACTGGGAGCTGTATGC
GGAGATCAGTCGCGAGCTCGCGGACGCGGCGCCGGACGACGTGCTGTTCC
AGGACGAGCGGGCCTATGCCGAGACGAACCTGGGGGTCCTGGCGCTCGAG
CGCGCGAGCCGCGGCGAGCCGGCGTACGAGGCGGCGCTCGAGCACTTCGA
GGCGGCGCTC
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