mRNA_M-pyrifera_M_contig116544.3441.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116544.3441.1
Unique NamemRNA_M-pyrifera_M_contig116544.3441.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig116544.3441.1 vs. uniprot
Match: A0A6A6P817_9PEZI (60s acidic ribosomal protein-domain-containing protein n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6P817_9PEZI)

HSP 1 Score: 88.2 bits (217), Expect = 1.330e-19
Identity = 41/68 (60.29%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 IAAYLLLVLGGNATPSADDVKGLLEGAGVEVNEEQLTKLVSELEGKNVEELVTAGLEKLQAVPTGGAG 204
            +AAYLLL LGGN +PSA D+KG+L+  G+E ++++L KL+SELEGK+++EL++AG EKL +VP+GGAG
Sbjct:    4 LAAYLLLGLGGNTSPSASDIKGVLDSVGIEADDDRLEKLLSELEGKDIQELISAGTEKLASVPSGGAG 71
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BLAST of mRNA_M-pyrifera_M_contig116544.3441.1 vs. uniprot
Match: G2Q3A8_MYCTT (Uncharacterized protein n=1 Tax=Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799) TaxID=573729 RepID=G2Q3A8_MYCTT)

HSP 1 Score: 88.2 bits (217), Expect = 1.370e-19
Identity = 42/68 (61.76%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 IAAYLLLVLGGNATPSADDVKGLLEGAGVEVNEEQLTKLVSELEGKNVEELVTAGLEKLQAVPTGGAG 204
            +AAYLLL LGGNA+PSADD+KG+L   G+E ++E+L KL+SELEGK++ EL+  G +KL +VP+GGAG
Sbjct:    4 LAAYLLLGLGGNASPSADDIKGVLSSVGIEADDERLQKLLSELEGKDINELIAEGTQKLASVPSGGAG 71
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BLAST of mRNA_M-pyrifera_M_contig116544.3441.1 vs. uniprot
Match: G0RRC1_HYPJQ (60s ribosomal protein rla2, P2 n=17 Tax=Trichoderma TaxID=5543 RepID=G0RRC1_HYPJQ)

HSP 1 Score: 87.0 bits (214), Expect = 3.560e-19
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 IAAYLLLVLGGNATPSADDVKGLLEGAGVEVNEEQLTKLVSELEGKNVEELVTAGLEKLQAVPTGGAG 204
            +AAYLLL LGGNA+PSA+D+K +L   GVE  +E+L KL+SEL GK++ EL+ AG EKL +VP+GGAG
Sbjct:    4 LAAYLLLTLGGNASPSAEDIKSVLSSVGVEAEDERLEKLISELSGKDINELIAAGSEKLASVPSGGAG 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig116544.3441.1 vs. uniprot
Match: M1W189_CLAP2 (Probable ribosomal protein P2 n=1 Tax=Claviceps purpurea (strain 20.1) TaxID=1111077 RepID=M1W189_CLAP2)

HSP 1 Score: 87.0 bits (214), Expect = 5.190e-19
Identity = 42/68 (61.76%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 IAAYLLLVLGGNATPSADDVKGLLEGAGVEVNEEQLTKLVSELEGKNVEELVTAGLEKLQAVPTGGAG 204
            +AAYLLL LGGNA+PSA+D+K +L   G+E + ++LTKL+SELEGK++ EL+ AG EKL +VP+GGAG
Sbjct:   17 LAAYLLLGLGGNASPSAEDIKTVLSSVGIEADADRLTKLISELEGKDISELIAAGSEKLASVPSGGAG 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig116544.3441.1 vs. uniprot
Match: A0A6A6JT80_9PLEO (Ribosomal protein 60S n=3 Tax=Dothideomycetes TaxID=147541 RepID=A0A6A6JT80_9PLEO)

HSP 1 Score: 86.7 bits (213), Expect = 5.450e-19
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 IAAYLLLVLGGNATPSADDVKGLLEGAGVEVNEEQLTKLVSELEGKNVEELVTAGLEKLQAVPTGGAG 204
            +AAYLLL LGGN +PSADDVK +LE  G+E   ++L KL+SELEGK++ EL+ +G EKL +VP+GGAG
Sbjct:    4 LAAYLLLGLGGNTSPSADDVKAVLESVGIETESDRLDKLISELEGKDINELIASGSEKLASVPSGGAG 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig116544.3441.1 vs. uniprot
Match: A0A2I2G5B9_9EURO (Ribosomal protein 60S n=2 Tax=Aspergillus TaxID=5052 RepID=A0A2I2G5B9_9EURO)

HSP 1 Score: 85.5 bits (210), Expect = 1.380e-18
Identity = 41/68 (60.29%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 IAAYLLLVLGGNATPSADDVKGLLEGAGVEVNEEQLTKLVSELEGKNVEELVTAGLEKLQAVPTGGAG 204
            +AA+LLL L GN +PSA DVKG+L   G++ +EE+LTKL+SELEGKN++EL++ G  KL +VP+GGAG
Sbjct:    4 VAAFLLLTLAGNESPSAADVKGVLSSVGIDADEERLTKLISELEGKNLQELISEGTTKLASVPSGGAG 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig116544.3441.1 vs. uniprot
Match: A0A366R141_9HYPO (Uncharacterized protein n=46 Tax=Fusarium TaxID=5506 RepID=A0A366R141_9HYPO)

HSP 1 Score: 85.5 bits (210), Expect = 1.460e-18
Identity = 41/68 (60.29%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 IAAYLLLVLGGNATPSADDVKGLLEGAGVEVNEEQLTKLVSELEGKNVEELVTAGLEKLQAVPTGGAG 204
            +AAYLLL LGGN +PSA DVK +LE  G+E +EE+L  L+SELEGK++++L++ G EKL +VP+GGAG
Sbjct:    4 LAAYLLLTLGGNTSPSAADVKAVLESVGIEADEERLNTLISELEGKDIQQLISEGSEKLASVPSGGAG 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig116544.3441.1 vs. uniprot
Match: A0A179HAK1_PURLI (60s acidic ribosomal protein domain-containing protein n=4 Tax=Ophiocordycipitaceae TaxID=474942 RepID=A0A179HAK1_PURLI)

HSP 1 Score: 85.5 bits (210), Expect = 1.460e-18
Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 IAAYLLLVLGGNATPSADDVKGLLEGAGVEVNEEQLTKLVSELEGKNVEELVTAGLEKLQAVPTGGAG 204
            +AAYLLL LGGNA+PSA DVK +L   G+E ++E+L KL+SELEGK++ EL+ AG EKL +VP+GGAG
Sbjct:    4 LAAYLLLGLGGNASPSAADVKKVLSCVGIEADDERLNKLISELEGKDINELIAAGTEKLASVPSGGAG 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig116544.3441.1 vs. uniprot
Match: B8MDW1_TALSN (60S acidic ribosomal protein P2/allergen Asp F 8 n=7 Tax=Eurotiales TaxID=5042 RepID=B8MDW1_TALSN)

HSP 1 Score: 85.5 bits (210), Expect = 1.500e-18
Identity = 41/68 (60.29%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 IAAYLLLVLGGNATPSADDVKGLLEGAGVEVNEEQLTKLVSELEGKNVEELVTAGLEKLQAVPTGGAG 204
            +AAYLLL L GN +PSA+D+KG+LE  G++ +EE+L KL+SELEGK+++EL+  G  KL +VPTGGAG
Sbjct:    4 LAAYLLLGLAGNTSPSAEDIKGVLESVGIDADEERLEKLLSELEGKDIQELIAEGSTKLASVPTGGAG 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig116544.3441.1 vs. uniprot
Match: A0A0F4GXM4_9PEZI (60s acidic ribosomal protein p2 n=4 Tax=Zymoseptoria TaxID=1047167 RepID=A0A0F4GXM4_9PEZI)

HSP 1 Score: 85.5 bits (210), Expect = 1.500e-18
Identity = 41/67 (61.19%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 IAAYLLLVLGGNATPSADDVKGLLEGAGVEVNEEQLTKLVSELEGKNVEELVTAGLEKLQAVPTGGA 201
            +AAYLLL LGGN +PSA+D+KG+L   G+E +EE+LT+L+SELEGK++ EL+T G  KL +VP+GGA
Sbjct:    4 LAAYLLLGLGGNTSPSAEDIKGVLSAVGIEADEERLTQLLSELEGKDINELITEGSAKLASVPSGGA 70
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116544.3441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A6P817_9PEZI1.330e-1960.2960s acidic ribosomal protein-domain-containing pro... [more]
G2Q3A8_MYCTT1.370e-1961.76Uncharacterized protein n=1 Tax=Myceliophthora the... [more]
G0RRC1_HYPJQ3.560e-1961.7660s ribosomal protein rla2, P2 n=17 Tax=Trichoderm... [more]
M1W189_CLAP25.190e-1961.76Probable ribosomal protein P2 n=1 Tax=Claviceps pu... [more]
A0A6A6JT80_9PLEO5.450e-1961.76Ribosomal protein 60S n=3 Tax=Dothideomycetes TaxI... [more]
A0A2I2G5B9_9EURO1.380e-1860.29Ribosomal protein 60S n=2 Tax=Aspergillus TaxID=50... [more]
A0A366R141_9HYPO1.460e-1860.29Uncharacterized protein n=46 Tax=Fusarium TaxID=55... [more]
A0A179HAK1_PURLI1.460e-1863.2460s acidic ribosomal protein domain-containing pro... [more]
B8MDW1_TALSN1.500e-1860.2960S acidic ribosomal protein P2/allergen Asp F 8 n... [more]
A0A0F4GXM4_9PEZI1.500e-1861.1960s acidic ribosomal protein p2 n=4 Tax=Zymoseptor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116544contigM-pyrifera_M_contig116544:3..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score89.7
Seed ortholog evalue8.9e-16
Seed eggNOG ortholog78579.XP_003659614.1
Preferred nameRPP2B
KEGG koko:K02943
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0001932,GO:0001934,GO:0002181,GO:0002182,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0005840,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009893,GO:0009987,GO:0010467,GO:0010562,GO:0010604,GO:0015934,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0022625,GO:0022626,GO:0030234,GO:0030295,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0032991,GO:0033674,GO:0034641,GO:0034645,GO:0042325,GO:0042327,GO:0043043,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043549,GO:0043603,GO:0043604,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045859,GO:0045860,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Belongs to the eukaryotic ribosomal protein P1 P2 family
EggNOG OGs21AJS@147550,3A5KC@33154,3HE32@35718,3P569@4751,3QWDK@4890,3U9K4@5139,COG2058@1,KOG3449@2759
COG Functional cat.J
Best tax levelChaetomiaceae
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size503
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.0058875-CDS-M-pyrifera_M_contig116544:2..3291622815683.0058875-CDS-M-pyrifera_M_contig116544:2..329Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116544 3..329 +
1692277519.9520347-CDS-M-pyrifera_M_contig116544:2..3291692277519.9520347-CDS-M-pyrifera_M_contig116544:2..329Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116544 3..329 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.0157738-UTR-M-pyrifera_M_contig116544:329..5051622815683.0157738-UTR-M-pyrifera_M_contig116544:329..505Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116544 330..505 +
1692277519.9653392-UTR-M-pyrifera_M_contig116544:329..5051692277519.9653392-UTR-M-pyrifera_M_contig116544:329..505Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116544 330..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116544.3441.1prot_M-pyrifera_M_contig116544.3441.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116544 3..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116544.3441.1

>prot_M-pyrifera_M_contig116544.3441.1 ID=prot_M-pyrifera_M_contig116544.3441.1|Name=mRNA_M-pyrifera_M_contig116544.3441.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
IAAYLLLVLGGNATPSADDVKGLLEGAGVEVNEEQLTKLVSELEGKNVEE
LVTAGLEKLQAVPTGGAGGAPAAAAGGDAAAAVVEEEEEEEEVDANVGGL
FGDEDDGY*
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mRNA from alignment at M-pyrifera_M_contig116544:3..505+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116544.3441.1 ID=mRNA_M-pyrifera_M_contig116544.3441.1|Name=mRNA_M-pyrifera_M_contig116544.3441.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=503bp|location=Sequence derived from alignment at M-pyrifera_M_contig116544:3..505+ (Macrocystis pyrifera P11B4 male)
ATCGCTGCTTACCTTCTCCTGGTGCTGGGCGGAAACGCCACTCCGTCTGC
TGATGACGTCAAGGGCCTGCTCGAGGGCGCCGGCGTCGAGGTGAACGAGG
AGCAGCTGACCAAGCTCGTGTCCGAGCTGGAGGGCAAGAACGTCGAGGAG
CTGGTCACCGCTGGTCTGGAGAAGCTGCAGGCTGTGCCGACCGGCGGCGC
CGGCGGTGCCCCGGCTGCGGCTGCGGGCGGCGATGCCGCTGCGGCTGTTG
TCGAGGAGGAGGAGGAGGAGGAGGAGGTCGACGCCAACGTCGGCGGCCTC
TTCGGTGATGAGGACGATGGCTACTGAGCACTCCGCTCTCTGTTCTCCTG
CCTTCTCGGCCGGACAGCGCTGTCTCGCTCGCTTTGAACGCGTGCGTGCG
CTCTGTCCCGTCCGTGGGGCACTGAGGCCCCGGTGCCTGCGCACACCCCG
TATTTCCGTGGTTGTGTGTATGCGTGCTAGGGTAAGGGGTAGTTACTCGC
TTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116544:3..505+

>mRNA_M-pyrifera_M_contig116544.3441.1 ID=mRNA_M-pyrifera_M_contig116544.3441.1|Name=mRNA_M-pyrifera_M_contig116544.3441.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig116544:3..505+ (Macrocystis pyrifera P11B4 male)
ATCGCTGCTTACCTTCTCCTGGTGCTGGGCGGAAACGCCACTCCGTCTGC
TGATGACGTCAAGGGCCTGCTCGAGGGCGCCGGCGTCGAGGTGAACGAGG
AGCAGCTGACCAAGCTCGTGTCCGAGCTGGAGGGCAAGAACGTCGAGGAG
CTGGTCACCGCTGGTCTGGAGAAGCTGCAGGCTGTGCCGACCGGCGGCGC
CGGCGGTGCCCCGGCTGCGGCTGCGGGCGGCGATGCCGCTGCGGCTGTTG
TCGAGGAGGAGGAGGAGGAGGAGGAGGTCGACGCCAACGTCGGCGGCCTC
TTCGGTGATGAGGACGATGGCTACTGAATCGCTGCTTACCTTCTCCTGGT
GCTGGGCGGAAACGCCACTCCGTCTGCTGATGACGTCAAGGGCCTGCTCG
AGGGCGCCGGCGTCGAGGTGAACGAGGAGCAGCTGACCAAGCTCGTGTCC
GAGCTGGAGGGCAAGAACGTCGAGGAGCTGGTCACCGCTGGTCTGGAGAA
GCTGCAGGCTGTGCCGACCGGCGGCGCCGGCGGTGCCCCGGCTGCGGCTG
CGGGCGGCGATGCCGCTGCGGCTGTTGTCGAGGAGGAGGAGGAGGAGGAG
GAGGTCGACGCCAACGTCGGCGGCCTCTTCGGTGATGAGGACGATGGCTA
CTGA
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