mRNA_M-pyrifera_M_contig116537.3437.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116537.3437.1
Unique NamemRNA_M-pyrifera_M_contig116537.3437.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116537.3437.1 vs. uniprot
Match: L8GF10_ACACA (Endonuclease III, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GF10_ACACA)

HSP 1 Score: 82.0 bits (201), Expect = 3.220e-15
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 1 
Query:    4 VRALFLPSGGMNMKFLPKFAFVLAYAVSVKDGRFSSVTAAADGSIDTSQLESSREKIMAVSRLCLKRSGDAQQESIAQQLDRHLGLPVIGMGVQLYIGSFLRKSTFYSSSYSSACTPIYLHLLRRIAELHALQRPSVFGLLVDCFHLDLDLDALAAV 474
            +R +F P+  ++  ++ K+ FVLAYA SV+D R         G +D   L  +   + AV  +C   +  ++ ++ A  L  +L  PV+ MG+  +I + L    +Y +S  +  TP YL LLR IA  H  Q         +CF +D DLDALAAV
Sbjct:  304 IRDMFSPARSISPNYILKYFFVLAYAASVRDDRIFG------GKLDKEMLTPTMSALKAVQPICQGNTLGSELQAAAHDLRTNLSYPVVAMGIIHWIRTNLTDPAYYVTSIKTVRTPFYLELLREIAYKHPFQ---------ECFTIDYDLDALAAV 445
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BLAST of mRNA_M-pyrifera_M_contig116537.3437.1 vs. uniprot
Match: A0A0H5R8A1_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R8A1_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 1.820e-11
Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 1 
Query:   67 VLAYAVSVKDGR----FSSVTAAADGS-IDTSQLESSREKIMAVSRLCLKRSGDAQQESIAQQLDRHLGLPVIGMGVQLYIGSFLRKSTFYSSSYSSACTPIYLHLLRRIAELHALQRPSVFGLLVDCFHLDLDLDALAAV 474
            +LAYA  V+D R     SS+ +  D + +D S++ ++   +  +S +C  +            L  H+ LPV    +  +I   L    +YS++Y S CTP+++ LL  I+ LH+L RP VF LL   FHL  DL  LA +
Sbjct:  384 LLAYASCVRDHRQWFGASSIQSRLDDTLVDKSRMNATIAALNEISAICQNKEFGFHIVQSEPMLHAHVPLPVCSCAILHWIKLSLLSPAYYSTTYQSVCTPVFIRLLGVISTLHSLLRPGVFSLLCATFHLKTDLHDLAVI 524
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BLAST of mRNA_M-pyrifera_M_contig116537.3437.1 vs. uniprot
Match: A0A1V9YFW1_9STRA (Negative elongation factor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YFW1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.040e-9
Identity = 47/146 (32.19%), Postives = 72/146 (49.32%), Query Frame = 1 
Query:    1 LVRALFLPSGGMNMKFLPKFAFVLAYAVSVKDGRFSSVTAAADGSIDTSQLESSREKIMAVSRLCLKR---SGDAQQESIAQQLDRHLGLPVIGMGVQLYIGSFLRKSTFYSSSYSSACTPIYLHLLRRIAELHALQRPSVFGLLV 429
            L  ALF P   +        A+VLAYA SV DGR  S+      ++    LE+    ++  S +C      S +  +    ++L R +  PV+ MGV  ++   L   +F +  +  AC P++L LLR   ELH +Q P+VF +LV
Sbjct:  529 LTDALFHPYESIGEAHRAACAYVLAYAGSVVDGR--SLLDTQPATLTPPPLEAIVTALVEASAICKSETTLSYNMHESEAVEKLQRAMETPVVAMGVLHWLSRLLESKSFLNGPFLHACFPVFLKLLRHDVELHMVQWPTVFRVLV 672
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BLAST of mRNA_M-pyrifera_M_contig116537.3437.1 vs. uniprot
Match: A0A1V9ZY20_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZY20_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.890e-9
Identity = 44/147 (29.93%), Postives = 68/147 (46.26%), Query Frame = 1 
Query:    1 LVRALFLPSGGMNMKFLPKFAFVLAYAVSVKDGR-FSSVTAAADGSIDTSQLESSREKIMAVSRLCLKR---SGDAQQESIAQQLDRHLGLPVIGMGVQLYIGSFLRKSTFYSSSYSSACTPIYLHLLRRIAELHALQRPSVFGLLV 429
            L  ALF P   +        A++LAYA S  D R     T     S +   LE   + +   S +C      S +  +     +L + +  PV+ MGV  ++G  L   +FY+  +  AC P++L L+R   ELH +Q P VF +L+
Sbjct: 1063 LTDALFHPFESITESHRASCAYILAYAASAVDDRSLLDTTPHNSSSFELPSLEPITKALQEASLVCKSETTLSYNMHESEAVDKLVKTMDSPVVSMGVLHWLGRLLESKSFYNGPFLHACFPVFLKLMRHGIELHTVQWPIVFNVLI 1209
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116537.3437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
L8GF10_ACACA3.220e-1533.76Endonuclease III, putative n=1 Tax=Acanthamoeba ca... [more]
A0A0H5R8A1_9EUKA1.820e-1133.33Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A1V9YFW1_9STRA1.040e-932.19Negative elongation factor n=1 Tax=Achlya hypogyna... [more]
A0A1V9ZY20_9STRA3.890e-929.93Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116537contigM-pyrifera_M_contig116537:2..475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue8.9e-09
Seed eggNOG ortholog4792.ETI56327
Preferred nameWAC
KEGG koko:K15181
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000323,GO:0000993,GO:0001098,GO:0001099,GO:0003008,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005764,GO:0005773,GO:0006325,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010390,GO:0010468,GO:0010506,GO:0010507,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016239,GO:0016241,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031570,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032446,GO:0032501,GO:0032991,GO:0033523,GO:0033554,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044783,GO:0044877,GO:0045786,GO:0045861,GO:0045893,GO:0045935,GO:0046958,GO:0046959,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0071894,GO:0080090,GO:1901564,GO:1901799,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1990904,GO:2000058,GO:2000059,GO:2000112,GO:2001141
EggNOG free text desc.TH1 protein
EggNOG OGs3QB2Q@4776,COG5104@1,KOG0152@2759
COG Functional cat.A
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.774047-CDS-M-pyrifera_M_contig116537:1..4751622815682.774047-CDS-M-pyrifera_M_contig116537:1..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116537 2..475 +
1692277519.825456-CDS-M-pyrifera_M_contig116537:1..4751692277519.825456-CDS-M-pyrifera_M_contig116537:1..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116537 2..475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116537.3437.1prot_M-pyrifera_M_contig116537.3437.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116537 2..475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116537.3437.1

>prot_M-pyrifera_M_contig116537.3437.1 ID=prot_M-pyrifera_M_contig116537.3437.1|Name=mRNA_M-pyrifera_M_contig116537.3437.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
LVRALFLPSGGMNMKFLPKFAFVLAYAVSVKDGRFSSVTAAADGSIDTSQ
LESSREKIMAVSRLCLKRSGDAQQESIAQQLDRHLGLPVIGMGVQLYIGS
FLRKSTFYSSSYSSACTPIYLHLLRRIAELHALQRPSVFGLLVDCFHLDL
DLDALAAV
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mRNA from alignment at M-pyrifera_M_contig116537:2..475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116537.3437.1 ID=mRNA_M-pyrifera_M_contig116537.3437.1|Name=mRNA_M-pyrifera_M_contig116537.3437.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig116537:2..475+ (Macrocystis pyrifera P11B4 male)
TTGGTGCGTGCGCTGTTTCTGCCGTCGGGCGGCATGAACATGAAGTTCCT
GCCCAAGTTTGCCTTCGTACTCGCCTACGCAGTGAGCGTGAAGGACGGCC
GTTTTTCGAGTGTGACGGCGGCGGCCGACGGCTCGATAGATACCTCACAA
CTGGAGAGCAGCAGAGAGAAGATCATGGCTGTCTCTCGTCTCTGTCTCAA
GCGTTCTGGCGATGCCCAGCAGGAGAGCATTGCCCAGCAGCTGGATCGCC
ACCTCGGCCTTCCCGTTATAGGCATGGGAGTACAGCTCTACATCGGCAGC
TTCCTCCGCAAGAGCACCTTCTACAGCTCCTCCTACAGCTCTGCCTGCAC
GCCCATCTACCTCCACCTCCTGCGCCGCATTGCAGAGCTGCATGCACTCC
AGCGGCCCTCCGTCTTCGGCCTCCTCGTCGACTGCTTCCACCTCGACCTC
GACCTCGACGCTCTCGCCGCAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116537:2..475+

>mRNA_M-pyrifera_M_contig116537.3437.1 ID=mRNA_M-pyrifera_M_contig116537.3437.1|Name=mRNA_M-pyrifera_M_contig116537.3437.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig116537:2..475+ (Macrocystis pyrifera P11B4 male)
TTGGTGCGTGCGCTGTTTCTGCCGTCGGGCGGCATGAACATGAAGTTCCT
GCCCAAGTTTGCCTTCGTACTCGCCTACGCAGTGAGCGTGAAGGACGGCC
GTTTTTCGAGTGTGACGGCGGCGGCCGACGGCTCGATAGATACCTCACAA
CTGGAGAGCAGCAGAGAGAAGATCATGGCTGTCTCTCGTCTCTGTCTCAA
GCGTTCTGGCGATGCCCAGCAGGAGAGCATTGCCCAGCAGCTGGATCGCC
ACCTCGGCCTTCCCGTTATAGGCATGGGAGTACAGCTCTACATCGGCAGC
TTCCTCCGCAAGAGCACCTTCTACAGCTCCTCCTACAGCTCTGCCTGCAC
GCCCATCTACCTCCACCTCCTGCGCCGCATTGCAGAGCTGCATGCACTCC
AGCGGCCCTCCGTCTTCGGCCTCCTCGTCGACTGCTTCCACCTCGACCTC
GACCTCGACGCTCTCGCCGCAGTGTTGGTGCGTGCGCTGTTTCTGCCGTC
GGGCGGCATGAACATGAAGTTCCTGCCCAAGTTTGCCTTCGTACTCGCCT
ACGCAGTGAGCGTGAAGGACGGCCGTTTTTCGAGTGTGACGGCGGCGGCC
GACGGCTCGATAGATACCTCACAACTGGAGAGCAGCAGAGAGAAGATCAT
GGCTGTCTCTCGTCTCTGTCTCAAGCGTTCTGGCGATGCCCAGCAGGAGA
GCATTGCCCAGCAGCTGGATCGCCACCTCGGCCTTCCCGTTATAGGCATG
GGAGTACAGCTCTACATCGGCAGCTTCCTCCGCAAGAGCACCTTCTACAG
CTCCTCCTACAGCTCTGCCTGCACGCCCATCTACCTCCACCTCCTGCGCC
GCATTGCAGAGCTGCATGCACTCCAGCGGCCCTCCGTCTTCGGCCTCCTC
GTCGACTGCTTCCACCTCGACCTCGACCTCGACGCTCTCGCCGCAGTG
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