mRNA_M-pyrifera_M_contig11652.3431.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11652.3431.1
Unique NamemRNA_M-pyrifera_M_contig11652.3431.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11652.3431.1 vs. uniprot
Match: A0A2P4YRP2_9STRA (26S proteasome non-ATPase regulatory subunit n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YRP2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.370e-5
Identity = 44/146 (30.14%), Postives = 66/146 (45.21%), Query Frame = 1 
Query:    1 PLWMACVRGDEHVATFLLGNGAEVDRKGGPRGTAPIFEAIAAQNGDMVSLLIRRGAALEQIHHT--MPLLLVACLLGYVDMVQLLLDEGADINATTTTGFRLMDRILDAEKTNHTVIKTLIDNGYDIEERNANGHTCLIRCVMRGY 432
            PL  AC  G   VA FLL +           G  P+  A +A +GD+V LL+ +GA     +    +PL       G  ++ +LLLD   D+N    TG   + R L    +   +I  L+D+G  +  R+  G+T L   +  GY
Sbjct:   37 PLHWACATGRLDVAEFLLEHAKAAVNVQDDAGWTPLMSAASAGHGDVVGLLLSKGADANIANENGQIPLHYHR---GRQEIAELLLDYTRDVNQADNTGSTSLMRALGGNPS-AVIIALLLDHGAKVNTRDVGGNTPLHLAISEGY 178
[Close]
BLAST of mRNA_M-pyrifera_M_contig11652.3431.1 vs. uniprot
Match: A0A067R9V2_ZOONE (Ankyrin-3 n=2 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067R9V2_ZOONE)

HSP 1 Score: 55.5 bits (132), Expect = 6.130e-5
Identity = 36/105 (34.29%), Postives = 54/105 (51.43%), Query Frame = 1 
Query:    1 PLWMACVRGDEHVATFLLGNGAEVDRKGGPRGTAPIFEAIAAQNGDMVSLLIRRGAALE----------QIHHTMPLLLVACLLGYVDMVQLLLDEGADINATTT 285
            P+ +A   G E++  ++L NG  VD +    G  P+F A+  +  ++   L+ RGAA+            +H        A  LG +D+VQLLLD GADINA T+
Sbjct:  884 PIHLAAAYGHENIVNWMLDNGVTVDVRN-RLGATPLFSAVHNKRLEIAHFLLDRGAAVNARVINGDNRTSLHE-------AAALGSMDLVQLLLDGGADINAATS 980
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11652.3431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2P4YRP2_9STRA1.370e-530.1426S proteasome non-ATPase regulatory subunit n=1 T... [more]
A0A067R9V2_ZOONE6.130e-534.29Ankyrin-3 n=2 Tax=Zootermopsis nevadensis TaxID=13... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11652contigM-pyrifera_M_contig11652:7000..8261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size864
Cds size855
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11652.3431.1prot_M-pyrifera_M_contig11652.3431.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11652 7009..8261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.5124393-UTR-M-pyrifera_M_contig11652:6999..70081622815682.5124393-UTR-M-pyrifera_M_contig11652:6999..7008Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11652 7000..7008 +
1692277519.7049527-UTR-M-pyrifera_M_contig11652:6999..70081692277519.7049527-UTR-M-pyrifera_M_contig11652:6999..7008Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11652 7000..7008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.5234826-CDS-M-pyrifera_M_contig11652:7008..74941622815682.5234826-CDS-M-pyrifera_M_contig11652:7008..7494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11652 7009..7494 +
1692277519.717719-CDS-M-pyrifera_M_contig11652:7008..74941692277519.717719-CDS-M-pyrifera_M_contig11652:7008..7494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11652 7009..7494 +
1622815682.5343-CDS-M-pyrifera_M_contig11652:7772..79131622815682.5343-CDS-M-pyrifera_M_contig11652:7772..7913Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11652 7773..7913 +
1692277519.7308762-CDS-M-pyrifera_M_contig11652:7772..79131692277519.7308762-CDS-M-pyrifera_M_contig11652:7772..7913Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11652 7773..7913 +
1622815682.5472927-CDS-M-pyrifera_M_contig11652:8033..82611622815682.5472927-CDS-M-pyrifera_M_contig11652:8033..8261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11652 8034..8261 +
1692277519.7397473-CDS-M-pyrifera_M_contig11652:8033..82611692277519.7397473-CDS-M-pyrifera_M_contig11652:8033..8261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11652 8034..8261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11652.3431.1

>prot_M-pyrifera_M_contig11652.3431.1 ID=prot_M-pyrifera_M_contig11652.3431.1|Name=mRNA_M-pyrifera_M_contig11652.3431.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=285bp
MACVRGDEHVATFLLGNGAEVDRKGGPRGTAPIFEAIAAQNGDMVSLLIR
RGAALEQIHHTMPLLLVACLLGYVDMVQLLLDEGADINATTTTGFRLMDR
ILDAEKTNHTVIKTLIDNGYDIEERNANGHTCLIRCVMRGYVAAVQMLID
KGANVNGKDIRGYTPLMRACDRNLEDTAAALIDAGASIEKRGINGNTPII
ICSAKGSTEACFHGHLDAATTLIENGISLDHADADGNTALHAAVAQGRLK
IVERLILSGAGVNIKNKQGISPLMMATARGPAPGW
back to top

mRNA from alignment at M-pyrifera_M_contig11652:7000..8261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11652.3431.1 ID=mRNA_M-pyrifera_M_contig11652.3431.1|Name=mRNA_M-pyrifera_M_contig11652.3431.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1262bp|location=Sequence derived from alignment at M-pyrifera_M_contig11652:7000..8261+ (Macrocystis pyrifera P11B4 male)
CCTCTCTGGATGGCGTGCGTTCGGGGCGACGAACACGTGGCCACCTTCCT
TTTAGGCAATGGCGCTGAAGTCGACAGAAAGGGCGGACCACGCGGCACAG
CCCCTATTTTTGAAGCTATCGCGGCACAAAACGGTGACATGGTTTCGTTG
CTTATTCGCCGTGGTGCCGCCCTGGAACAAATCCACCATACCATGCCCCT
GCTCCTTGTTGCTTGTTTGTTGGGGTACGTGGACATGGTACAACTGCTCC
TAGACGAAGGTGCCGATATCAATGCAACAACGACGACCGGGTTTAGGTTG
ATGGACCGAATTCTTGATGCAGAGAAAACAAATCACACTGTCATCAAAAC
CTTAATTGATAACGGCTACGACATAGAAGAAAGAAACGCCAATGGCCACA
CGTGTCTTATTCGATGCGTCATGCGTGGGTATGTAGCCGCTGTTCAGATG
CTTATCGACAAAGGAGCGAATGTCAATGGCAAAGACATCCGAGGCGTGAC
CGCTATTACACATGCAGCTTGAGGGGTCACTCGTTTATGTCCGTGGAAGT
CGATGAAATTCTGGAGAATAGCCAAAATTTTGGCTTACAAAATGCCAATG
GCGACGAGGCATATACAATGTTCCCGTCGCTATTGAAGACCAGAGTGGGG
TGGTGGGGACGCGCCTACACTCAAATGTCGAAACAAATTCACGACCAAAT
AGCCGACCCTCGAGCCGTGGCGGATCTCATTATGCGCGGAGCAGATGTCG
ATGCCGAGTACTACGCGGACAAGTATACACCTCTCATGAGAGCGTGCGAC
AGGAATCTCGAGGACACCGCCGCGGCCTTAATCGATGCCGGTGCGTCGAT
TGAAAAGCGAGGTATCAATGGGAACACGCCTATCATCATATGTAGCGCCA
AAGGCAGTACTGAAGTGCTGAAACTTCTTCTGCAAAACGGGGCTGACATA
TCATCCACAACGGATGTGTGGACACCGGATGCGGTAGAGAATCTATTCTT
CTCGCCACGGGGCGGCTACAATGCACTGACAAAGGCTTGCTTCCATGGCC
ACCTAGACGCGGCCACCACCCTCATCGAGAATGGTATAAGCCTAGACCAC
GCAGACGCAGACGGAAACACGGCTCTGCATGCCGCAGTGGCCCAGGGAAG
ACTTAAAATCGTCGAAAGACTGATACTGAGCGGCGCTGGTGTCAACATCA
AAAACAAACAAGGAATATCGCCGTTAATGATGGCGACTGCACGCGGTCCA
GCACCTGGATGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11652:7000..8261+

>mRNA_M-pyrifera_M_contig11652.3431.1 ID=mRNA_M-pyrifera_M_contig11652.3431.1|Name=mRNA_M-pyrifera_M_contig11652.3431.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1710bp|location=Sequence derived from alignment at M-pyrifera_M_contig11652:7000..8261+ (Macrocystis pyrifera P11B4 male)
ATGGCGTGCGTTCGGGGCGACGAACACGTGGCCACCTTCCTTTTAGGCAA
TGGCGCTGAAGTCGACAGAAAGGGCGGACCACGCGGCACAGCCCCTATTT
TTGAAGCTATCGCGGCACAAAACGGTGACATGGTTTCGTTGCTTATTCGC
CGTGGTGCCGCCCTGGAACAAATCCACCATACCATGCCCCTGCTCCTTGT
TGCTTGTTTGTTGGGGTACGTGGACATGGTACAACTGCTCCTAGACGAAG
GTGCCGATATCAATGCAACAACGACGACCGGGTTTAGGTTGATGGACCGA
ATTCTTGATGCAGAGAAAACAAATCACACTGTCATCAAAACCTTAATTGA
TAACGGCTACGACATAGAAGAAAGAAACGCCAATGGCCACACGTGTCTTA
TTCGATGCGTCATGCGTGGGTATGTAGCCGCTGTTCAGATGCTTATCGAC
AAAGGAGCGAATGTCAATGGCAAAGACATCCGAGGCATGGCGTGCGTTCG
GGGCGACGAACACGTGGCCACCTTCCTTTTAGGCAATGGCGCTGAAGTCG
ACAGAAAGGGCGGACCACGCGGCACAGCCCCTATTTTTGAAGCTATCGCG
GCACAAAACGGTGACATGGTTTCGTTGCTTATTCGCCGTGGTGCCGCCCT
GGAACAAATCCACCATACCATGCCCCTGCTCCTTGTTGCTTGTTTGTTGG
GGTACGTGGACATGGTACAACTGCTCCTAGACGAAGGTGCCGATATCAAT
GCAACAACGACGACCGGGTTTAGGTTGATGGACCGAATTCTTGATGCAGA
GAAAACAAATCACACTGTCATCAAAACCTTAATTGATAACGGCTACGACA
TAGAAGAAAGAAACGCCAATGGCCACACGTGTCTTATTCGATGCGTCATG
CGTGGGTATGTAGCCGCTGTTCAGATGCTTATCGACAAAGGAGCGAATGT
CAATGGCAAAGACATCCGAGGCTATACACCTCTCATGAGAGCGTGCGACA
GGAATCTCGAGGACACCGCCGCGGCCTTAATCGATGCCGGTGCGTCGATT
GAAAAGCGAGGTATCAATGGGAACACGCCTATCATCATATGTAGCGCCAA
AGGCAGTACTGAATATACACCTCTCATGAGAGCGTGCGACAGGAATCTCG
AGGACACCGCCGCGGCCTTAATCGATGCCGGTGCGTCGATTGAAAAGCGA
GGTATCAATGGGAACACGCCTATCATCATATGTAGCGCCAAAGGCAGTAC
TGAAGCTTGCTTCCATGGCCACCTAGACGCGGCCACCACCCTCATCGAGA
ATGGTATAAGCCTAGACCACGCAGACGCAGACGGAAACACGGCTCTGCAT
GCCGCAGTGGCCCAGGGAAGACTTAAAATCGTCGAAAGACTGATACTGAG
CGGCGCTGGTGTCAACATCAAAAACAAACAAGGAATATCGCCGTTAATGA
TGGCGACTGCACGCGGTCCAGCACCTGGATGGGCTTGCTTCCATGGCCAC
CTAGACGCGGCCACCACCCTCATCGAGAATGGTATAAGCCTAGACCACGC
AGACGCAGACGGAAACACGGCTCTGCATGCCGCAGTGGCCCAGGGAAGAC
TTAAAATCGTCGAAAGACTGATACTGAGCGGCGCTGGTGTCAACATCAAA
AACAAACAAGGAATATCGCCGTTAATGATGGCGACTGCACGCGGTCCAGC
ACCTGGATGG
back to top