mRNA_M-pyrifera_M_contig116451.3425.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116451.3425.1
Unique NamemRNA_M-pyrifera_M_contig116451.3425.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116451.3425.1 vs. uniprot
Match: A0A7J6Q8B4_PEROL (Transducin (Beta)-like 3 (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6Q8B4_PEROL)

HSP 1 Score: 73.9 bits (180), Expect = 2.450e-13
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   37 TLLGHRRGVWDVAFSPVDKLLASSAGDGHVRVWRIDDGACIRTLQGHPNSALCVTFL 207
            T  GHRRGVW V FSPVDK+LAS++GD  +++W + D  CIRT QGH ++ L V+F+
Sbjct:   20 TCTGHRRGVWGVDFSPVDKVLASASGDSLLKLWNLVDYTCIRTFQGHEHAVLNVSFI 76          
BLAST of mRNA_M-pyrifera_M_contig116451.3425.1 vs. uniprot
Match: A0A316UKA1_9BASI (WD40 repeat-like protein n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316UKA1_9BASI)

HSP 1 Score: 74.3 bits (181), Expect = 3.350e-13
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   22 LAPIRTLLGHRRGVWDVAFSPVDKLLASSAGDGHVRVWRIDDGACIRTLQGHPNSALCVTFLPGASSNAL 231
            L+P+ TL GH+RGVW VAFSPVD  + +++GD   ++W + D AC++T +GH +S L   FL G+    +
Sbjct:  559 LSPLATLKGHKRGVWSVAFSPVDPAILTTSGDRTAKLWSLRDFACVKTFEGHSHSVLKGRFLQGSKGTQI 628          
BLAST of mRNA_M-pyrifera_M_contig116451.3425.1 vs. uniprot
Match: A0A7S0UMX7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UMX7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.060e-13
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1
Query:   40 LLGHRRGVWDVAFSPVDKLLASSAGDGHVRVWRIDDGACIRTLQGHPNSALCV 198
            L GHRRGVWD  FSP+DK+LA+S+GD  +++W + D +C+RT QGH +S L V
Sbjct:    1 LKGHRRGVWDCQFSPIDKVLATSSGDKTIKLWSLSDYSCVRTFQGHLSSVLRV 53          
BLAST of mRNA_M-pyrifera_M_contig116451.3425.1 vs. uniprot
Match: A0A7S1NX73_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1NX73_9ALVE)

HSP 1 Score: 72.4 bits (176), Expect = 7.080e-13
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   46 GHRRGVWDVAFSPVDKLLASSAGDGHVRVWRIDDGACIRTLQGH--PNSALCVTFLPG 213
            GHR+ VW++ FSPVD++LAS++GDG  R+W + D  C++T QGH  P+  L V+FL G
Sbjct:   60 GHRKTVWNICFSPVDRVLASASGDGTARIWNLKDYTCVKTFQGHESPHGVLRVSFLSG 117          
BLAST of mRNA_M-pyrifera_M_contig116451.3425.1 vs. uniprot
Match: A0A0G4GY15_VITBC (Utp13 domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GY15_VITBC)

HSP 1 Score: 72.4 bits (176), Expect = 1.590e-12
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   46 GHRRGVWDVAFSPVDKLLASSAGDGHVRVWRIDDGACIRTLQGH--PNSALCVTFLPG 213
            GHR+ VW++ FSPVD++LAS++GDG  R+W + D  C++T QGH  P+  L V+FL G
Sbjct:  591 GHRKTVWNICFSPVDRVLASASGDGTARIWNLKDYTCVKTFQGHESPHGVLRVSFLSG 648          
BLAST of mRNA_M-pyrifera_M_contig116451.3425.1 vs. uniprot
Match: A0A7S0C1P0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C1P0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.770e-12
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 1
Query:    1 KLWDAHTLAP------------IRTLL-GHRRGVWDVAFSPVDKLLASSAGDGHVRVW---RIDDGA------CIRTLQGHPNSALCVTFLPG 213
            KLW+  TL+             +R +L GH+RGVWDVAFSP D++LAS +GDG V++W   R +D +      C+RT QGH +S L V FL G
Sbjct:  121 KLWNNPTLSKSNNNTTSNSSLTLRAILKGHKRGVWDVAFSPHDRVLASGSGDGTVKLWSLGRNNDTSPAGGCRCVRTFQGHSSSVLRVRFLSG 213          
BLAST of mRNA_M-pyrifera_M_contig116451.3425.1 vs. uniprot
Match: W4KLH4_HETIT (Utp13 domain-containing protein n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4KLH4_HETIT)

HSP 1 Score: 70.1 bits (170), Expect = 1.030e-11
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   22 LAPIRTLLGHRRGVWDVAFSPVDKLLASSAGDGHVRVWRIDDGACIRTLQGHPNSALCVTFLPGASS 222
            +A + T  GH+RGVW V F+  +++LAS  GD  VR+W ++D AC++ L+GH NS L V +L GA +
Sbjct:  602 IALLGTCRGHKRGVWSVRFARHERVLASGGGDRTVRLWSLEDFACLKVLEGHANSVLRVEWLSGADA 668          
BLAST of mRNA_M-pyrifera_M_contig116451.3425.1 vs. uniprot
Match: A0A4S4LPK6_9AGAM (Utp13 domain-containing protein n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LPK6_9AGAM)

HSP 1 Score: 67.0 bits (162), Expect = 1.240e-10
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   31 IRTLLGHRRGVWDVAFSPVDKLLASSAGDGHVRVWRIDDGACIRTLQGHPNSALCVTFL 207
            + T  GH+RGVW V F+  +++LAS  GD  VR+W +DD AC++ L+GH NS L V +L
Sbjct:  614 VGTCRGHKRGVWSVRFAKHERVLASGGGDRTVRIWGLDDFACMKVLEGHVNSVLRVEWL 672          
BLAST of mRNA_M-pyrifera_M_contig116451.3425.1 vs. uniprot
Match: UPI00140396EC (transducin beta-like protein 3 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI00140396EC)

HSP 1 Score: 65.9 bits (159), Expect = 3.150e-10
Identity = 26/50 (52.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   22 LAPIRTLLGHRRGVWDVAFSPVDKLLASSAGDGHVRVWRIDDGACIRTLQ 171
            + P+  L GHRRGVW VAFSP+D+++AS++ DG VR+W + D AC++T +
Sbjct:  538 VGPVAVLRGHRRGVWAVAFSPMDQVVASASADGSVRLWGLHDFACLKTFE 587          
BLAST of mRNA_M-pyrifera_M_contig116451.3425.1 vs. uniprot
Match: A0A7S3BFW1_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BFW1_9VIRI)

HSP 1 Score: 65.1 bits (157), Expect = 4.850e-10
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:   19 TLAPIRTLLGHRRGVWDVAFSPVDKLLASSAGDGHVRVWRIDDGACIRTL 168
            +L P   L GHRRGVW VAFSP D+++A+++GD  VR+W + D  C+RTL
Sbjct:    2 SLVPAGVLRGHRRGVWSVAFSPTDRVVATASGDRTVRLWTVADCVCVRTL 51          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116451.3425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J6Q8B4_PEROL2.450e-1356.14Transducin (Beta)-like 3 (Fragment) n=1 Tax=Perkin... [more]
A0A316UKA1_9BASI3.350e-1344.29WD40 repeat-like protein n=1 Tax=Jaminaea rosea Ta... [more]
A0A7S0UMX7_9STRA4.060e-1356.60Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S1NX73_9ALVE7.080e-1351.72Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A0G4GY15_VITBC1.590e-1251.72Utp13 domain-containing protein n=3 Tax=Vitrella b... [more]
A0A7S0C1P0_9STRA2.770e-1245.16Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
W4KLH4_HETIT1.030e-1146.27Utp13 domain-containing protein n=1 Tax=Heterobasi... [more]
A0A4S4LPK6_9AGAM1.240e-1049.15Utp13 domain-containing protein n=1 Tax=Bondarzewi... [more]
UPI00140396EC3.150e-1052.00transducin beta-like protein 3 n=1 Tax=Petromyzon ... [more]
A0A7S3BFW1_9VIRI4.850e-1054.00Hypothetical protein n=1 Tax=Prasinoderma singular... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116451contigM-pyrifera_M_contig116451:224..556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score70.1
Seed ortholog evalue7.4e-10
Seed eggNOG ortholog984962.XP_009540676.1
Preferred nameutp13
KEGG koko:K14555
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.WD40 repeat-like protein
EggNOG OGs224UQ@155619,38BUJ@33154,3H0ZX@355688,3NUNT@4751,3UYZJ@5204,KOG0319@1,KOG0319@2759
COG Functional cat.A
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815682.1899981-CDS-M-pyrifera_M_contig116451:223..5561622815682.1899981-CDS-M-pyrifera_M_contig116451:223..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116451 224..556 -
1692277519.5444288-CDS-M-pyrifera_M_contig116451:223..5561692277519.5444288-CDS-M-pyrifera_M_contig116451:223..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116451 224..556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116451.3425.1prot_M-pyrifera_M_contig116451.3425.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116451 224..556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116451.3425.1

>prot_M-pyrifera_M_contig116451.3425.1 ID=prot_M-pyrifera_M_contig116451.3425.1|Name=mRNA_M-pyrifera_M_contig116451.3425.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
KLWDAHTLAPIRTLLGHRRGVWDVAFSPVDKLLASSAGDGHVRVWRIDDG
ACIRTLQGHPNSALCVTFLPGASSNALLASGGAEGALRVWDVAESTCVSV
IDAHKDRIWAI
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mRNA from alignment at M-pyrifera_M_contig116451:224..556-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116451.3425.1 ID=mRNA_M-pyrifera_M_contig116451.3425.1|Name=mRNA_M-pyrifera_M_contig116451.3425.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig116451:224..556- (Macrocystis pyrifera P11B4 male)
AAGCTCTGGGATGCTCACACTCTGGCTCCCATCCGCACACTATTGGGCCA TCGCCGAGGGGTGTGGGACGTGGCATTTTCTCCCGTGGACAAGCTGCTTG CGTCCAGTGCAGGGGATGGGCATGTGCGAGTATGGAGAATCGACGATGGA GCTTGCATTCGCACCCTCCAAGGACACCCAAACTCTGCCCTCTGCGTCAC GTTCCTCCCAGGAGCATCCTCCAACGCTCTCCTCGCTTCAGGAGGGGCAG AAGGGGCACTACGAGTGTGGGATGTAGCAGAATCCACATGCGTTTCTGTC ATTGACGCACACAAAGATCGCATCTGGGCCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116451:224..556-

>mRNA_M-pyrifera_M_contig116451.3425.1 ID=mRNA_M-pyrifera_M_contig116451.3425.1|Name=mRNA_M-pyrifera_M_contig116451.3425.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig116451:224..556- (Macrocystis pyrifera P11B4 male)
AAGCTCTGGGATGCTCACACTCTGGCTCCCATCCGCACACTATTGGGCCA
TCGCCGAGGGGTGTGGGACGTGGCATTTTCTCCCGTGGACAAGCTGCTTG
CGTCCAGTGCAGGGGATGGGCATGTGCGAGTATGGAGAATCGACGATGGA
GCTTGCATTCGCACCCTCCAAGGACACCCAAACTCTGCCCTCTGCGTCAC
GTTCCTCCCAGGAGCATCCTCCAACGCTCTCCTCGCTTCAGGAGGGGCAG
AAGGGGCACTACGAGTGTGGGATGTAGCAGAATCCACATGCGTTTCTGTC
ATTGACGCACACAAAGATCGCATCTGGGCCATCAAGCTCTGGGATGCTCA
CACTCTGGCTCCCATCCGCACACTATTGGGCCATCGCCGAGGGGTGTGGG
ACGTGGCATTTTCTCCCGTGGACAAGCTGCTTGCGTCCAGTGCAGGGGAT
GGGCATGTGCGAGTATGGAGAATCGACGATGGAGCTTGCATTCGCACCCT
CCAAGGACACCCAAACTCTGCCCTCTGCGTCACGTTCCTCCCAGGAGCAT
CCTCCAACGCTCTCCTCGCTTCAGGAGGGGCAGAAGGGGCACTACGAGTG
TGGGATGTAGCAGAATCCACATGCGTTTCTGTCATTGACGCACACAAAGA
TCGCATCTGGGCCATC
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