mRNA_M-pyrifera_M_contig116423.3416.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116423.3416.1
Unique NamemRNA_M-pyrifera_M_contig116423.3416.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116423.3416.1 vs. uniprot
Match: A0A0G4F874_VITBC (TLC domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F874_VITBC)

HSP 1 Score: 55.8 bits (133), Expect = 1.640e-7
Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 PSGSKLLHDYGNLVIMALMLIMCVDGLIQWPTTMWQPVCLLVYFVVDSAWI-FLDPSIVRSPTQILIHHAAASGLVLAALPSE 246
            P+  + LH+  NLVI+  +LI+    L++W +  +  + +L+YFV+D+AWI  +   +V+ P  I++HH AA  LV  ++  E
Sbjct:   12 PTIWRTLHNRFNLVILPTILILAARDLLRWESDYYTQLFVLLYFVIDTAWIGLMGYRVVKDPQSIMVHHLAAIVLVAGSMLKE 94
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BLAST of mRNA_M-pyrifera_M_contig116423.3416.1 vs. uniprot
Match: A0A5A8C5Y6_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5Y6_CAFRO)

HSP 1 Score: 49.7 bits (117), Expect = 5.100e-5
Identity = 21/68 (30.88%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:    1 PSGSKLLHDYGNLVIMALMLIMCVDGLIQWPTTMWQPVCLLVYFVVDSAWIFLDPSIVRSPTQILIHH 204
            P  +  LHD  N+ +  +M  +C+  +      +W  +  + YF +D  W+  DPSIV+ P +I++HH
Sbjct:  145 PGSTADLHDMMNMALFLIMGPLCIYSIFTGVMEVWPSLLGVTYFSLDMLWLVWDPSIVKQPGEIMMHH 212
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116423.3416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0G4F874_VITBC1.640e-734.94TLC domain-containing protein n=2 Tax=Vitrella bra... [more]
A0A5A8C5Y6_CAFRO5.100e-530.88Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116423contigM-pyrifera_M_contig116423:1..249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.8606212-CDS-M-pyrifera_M_contig116423:0..2491622815681.8606212-CDS-M-pyrifera_M_contig116423:0..249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116423 1..249 -
1692277519.432671-CDS-M-pyrifera_M_contig116423:0..2491692277519.432671-CDS-M-pyrifera_M_contig116423:0..249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116423 1..249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116423.3416.1prot_M-pyrifera_M_contig116423.3416.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116423 1..249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116423.3416.1

>prot_M-pyrifera_M_contig116423.3416.1 ID=prot_M-pyrifera_M_contig116423.3416.1|Name=mRNA_M-pyrifera_M_contig116423.3416.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
PSGSKLLHDYGNLVIMALMLIMCVDGLIQWPTTMWQPVCLLVYFVVDSAW
IFLDPSIVRSPTQILIHHAAASGLVLAALPSEA
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mRNA from alignment at M-pyrifera_M_contig116423:1..249-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116423.3416.1 ID=mRNA_M-pyrifera_M_contig116423.3416.1|Name=mRNA_M-pyrifera_M_contig116423.3416.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig116423:1..249- (Macrocystis pyrifera P11B4 male)
CCCTCTGGCTCGAAACTACTCCATGACTATGGAAATCTAGTCATCATGGC
TTTGATGTTGATCATGTGTGTGGATGGATTGATCCAATGGCCAACCACCA
TGTGGCAGCCAGTGTGTTTGCTGGTATATTTCGTTGTTGATAGTGCTTGG
ATCTTCCTGGACCCTTCCATTGTGCGTAGTCCCACCCAAATTCTTATCCA
TCATGCAGCTGCAAGTGGGTTGGTACTTGCAGCACTTCCATCAGAAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116423:1..249-

>mRNA_M-pyrifera_M_contig116423.3416.1 ID=mRNA_M-pyrifera_M_contig116423.3416.1|Name=mRNA_M-pyrifera_M_contig116423.3416.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig116423:1..249- (Macrocystis pyrifera P11B4 male)
CCCTCTGGCTCGAAACTACTCCATGACTATGGAAATCTAGTCATCATGGC
TTTGATGTTGATCATGTGTGTGGATGGATTGATCCAATGGCCAACCACCA
TGTGGCAGCCAGTGTGTTTGCTGGTATATTTCGTTGTTGATAGTGCTTGG
ATCTTCCTGGACCCTTCCATTGTGCGTAGTCCCACCCAAATTCTTATCCA
TCATGCAGCTGCAAGTGGGTTGGTACTTGCAGCACTTCCATCAGAAGCAC
CCTCTGGCTCGAAACTACTCCATGACTATGGAAATCTAGTCATCATGGCT
TTGATGTTGATCATGTGTGTGGATGGATTGATCCAATGGCCAACCACCAT
GTGGCAGCCAGTGTGTTTGCTGGTATATTTCGTTGTTGATAGTGCTTGGA
TCTTCCTGGACCCTTCCATTGTGCGTAGTCCCACCCAAATTCTTATCCAT
CATGCAGCTGCAAGTGGGTTGGTACTTGCAGCACTTCCATCAGAAGCA
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