mRNA_M-pyrifera_M_contig116414.3413.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116414.3413.1
Unique NamemRNA_M-pyrifera_M_contig116414.3413.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116414.3413.1 vs. uniprot
Match: A0A1Y1VI44_9FUNG (Uncharacterized protein n=2 Tax=Piromyces TaxID=4821 RepID=A0A1Y1VI44_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 1.610e-11
Identity = 39/131 (29.77%), Postives = 68/131 (51.91%), Query Frame = 1
Query:    1 TLLARFISARMATPEAMFVLRQRLGYEIGALSVVQHGISSTPHNPTDLGVDLTRAALVDTYIRPDFTPTGNLHPPTDASVPFRLTPNIQTLLTPFGVDGPLAQGATATAAAIVRRGQWFRDYLGLFFRDSI 393
            T+L +F+  +M     +F+LR++  Y++ A+S + + +S     P  + +      +  T + P  +P+  L   ++  VPFR TPNIQT +TP GV+G       + A A+        +YLG+F +D I
Sbjct: 3612 TVLTKFVLGKMKQYIDIFILRKQFTYQMAAVSFMSYVMSIAHRYPHKINISFETGNIWSTELLPSLSPSTFLFG-SNEPVPFRFTPNIQTFITPIGVEGVFTNIMMSIARALTEPEFELENYLGIFIKDEI 3741          
BLAST of mRNA_M-pyrifera_M_contig116414.3413.1 vs. uniprot
Match: F0WGA0_9STRA (Phosphatidylinositol kinase (PIKL3) putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WGA0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.000e-11
Identity = 43/131 (32.82%), Postives = 67/131 (51.15%), Query Frame = 1
Query:    1 TLLARFISARMATPEAMFVLRQRLGYEIGALSVVQHGISSTPHNPTDLGVDLTRAALVDTYIRPDFTPTGNLHPPTDASVPFRLTPNIQTLLTPFGVDGPLAQGATATAAAIVRRGQWFRDYLGLFFRDSI 393
            T+LA+++  R A P+A F  R      +   S +   +     +P    +  T   L  T +RP +   G +   T+A +PFRLT N+ T +TP GV+GPL  G ++ A A++      R+ L LFFRD +
Sbjct: 4183 TILAKYVLKRTAHPDAYFQYRNEFTKHLALSSFITSSLVIGERSPCRFLLSATSGQLRSTEVRPLYASNGIVDE-TNA-MPFRLTRNLVTFITPVGVNGPLTLGISSIAEALLGEQDILRNQLALFFRDDL 4311          
BLAST of mRNA_M-pyrifera_M_contig116414.3413.1 vs. uniprot
Match: A0A1Y1WU66_9FUNG (FAT-domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1WU66_9FUNG)

HSP 1 Score: 68.9 bits (167), Expect = 5.560e-11
Identity = 37/131 (28.24%), Postives = 69/131 (52.67%), Query Frame = 1
Query:    1 TLLARFISARMATPEAMFVLRQRLGYEIGALSVVQHGISSTPHNPTDLGVDLTRAALVDTYIRPDFTPTGNLHPPTDASVPFRLTPNIQTLLTPFGVDGPLAQGATATAAAIVRRGQWFRDYLGLFFRDSI 393
            T+L ++++ +M     +F+LR++  Y++ A+S + + +S     P  + +      +  T + P  +P+  L   ++  VPFR TPNIQT +TP GV+G       + A ++        +YLG+F +D I
Sbjct: 3556 TVLTKYVTTKMKQYIDLFILRKQFTYQMAAVSFMSYVMSIAHRYPHKINISFKTGNIWATELLPSLSPSSFLFG-SNEPVPFRFTPNIQTFITPTGVEGVFINIVMSIARSLTEPEFELENYLGIFIKDEI 3685          
BLAST of mRNA_M-pyrifera_M_contig116414.3413.1 vs. uniprot
Match: A0A1Y2C1F7_9FUNG (Uncharacterized protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2C1F7_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 6.620e-10
Identity = 35/131 (26.72%), Postives = 69/131 (52.67%), Query Frame = 1
Query:    1 TLLARFISARMATPEAMFVLRQRLGYEIGALSVVQHGISSTPHNPTDLGVDLTRAALVDTYIRPDFTPTGNLHPPTDASVPFRLTPNIQTLLTPFGVDGPLAQGATATAAAIVRRGQWFRDYLGLFFRDSI 393
            T+L +++ ++M     +F+LR++  +++ A+S + + +S     P  + +      +  T + P  +P   L   ++  VPFR TPNIQT +TP GV+G       + + +++       +YLG+F +D I
Sbjct: 3457 TVLTKYVLSKMKQYIDLFILRKQFTHQMAAVSFMSYVMSIAHRYPHKINISFETGNIWATELLPSLSPNTFLFG-SNEPVPFRFTPNIQTFITPIGVEGVFTNIIMSISRSLIEPEFELENYLGIFIKDEI 3586          
BLAST of mRNA_M-pyrifera_M_contig116414.3413.1 vs. uniprot
Match: A0A139A4X1_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A4X1_GONPJ)

HSP 1 Score: 65.9 bits (159), Expect = 6.630e-10
Identity = 37/131 (28.24%), Postives = 66/131 (50.38%), Query Frame = 1
Query:    1 TLLARFISARMATPEAMFVLRQRLGYEIGALSVVQHGISSTPHNPTDLGVDLTRAALVDTYIRPDFTPTGNLHPPTDASVPFRLTPNIQTLLTPFGVDGPLAQGATATAAAIVRRGQWFRDYLGLFFRDSI 393
            T+L RF+++RM T   ++ +R++   +  +++ + + +  +P  P+ + +     ++    + P       L   +   VPFRLTPNIQT +TP GV+G       A A ++        DY GLF RD +
Sbjct: 3645 TMLQRFMASRMETYSDLWAMRKQFTQQYASMTFMSYVMGISPRYPSRIVISCNTGSIWAAELYPAHGANALLG--SSEKVPFRLTPNIQTFMTPTGVEGVFTSSLMAIARSLTEPEFDVEDYTGLFVRDEL 3773          
BLAST of mRNA_M-pyrifera_M_contig116414.3413.1 vs. uniprot
Match: A0A0L0HAR4_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HAR4_SPIPD)

HSP 1 Score: 63.5 bits (153), Expect = 4.250e-9
Identity = 37/130 (28.46%), Postives = 61/130 (46.92%), Query Frame = 1
Query:    4 LLARFISARMATPEAMFVLRQRLGYEIGALSVVQHGISSTPHNPTDLGVDLTRAALVDTYIRPDFTPTGNLHPPTDASVPFRLTPNIQTLLTPFGVDGPLAQGATATAAAIVRRGQWFRDYLGLFFRDSI 393
            +L +FI+  +A+   ++ +R+     + A++ + H +S     P    +     ++  + + P  + T  L       VPFR TPNIQT LTP GV+G  A    A   A+        DYL +F RD +
Sbjct: 3565 ILTKFITKSLASYGELWTMRKHFTQSLAAVTFMTHVMSVGQRTPHKFHISRRSGSIWASDLLPSLSTTTYLFS-NGEPVPFRFTPNIQTFLTPIGVEGVFASSLQAIGRALTEPDYELEDYLSIFVRDEL 3693          
BLAST of mRNA_M-pyrifera_M_contig116414.3413.1 vs. uniprot
Match: A0A024GII8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GII8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.470e-8
Identity = 38/131 (29.01%), Postives = 60/131 (45.80%), Query Frame = 1
Query:    1 TLLARFISARMATPEAMFVLRQRLGYEIGALSVVQHGISSTPHNPTDLGVDLTRAALVDTYIRPDFTPTGNLHPPTDASVPFRLTPNIQTLLTPFGVDGPLAQGATATAAAIVRRGQWFRDYLGLFFRDSI 393
            T+LA ++      P+A F  R      +   S +   +     +P    ++     L  T +RP +   G +      ++PFRLT N  T +TP GV+GPL  G +  A A++      R+ L LFFRD +
Sbjct: 4198 TILAEYVMKLTPHPDAYFQYRNEFTKYLALSSFITSSLFIGERSPCRFLLNAKSGQLRSTEVRPSYASNGIIDETN--TMPFRLTRNFVTFITPVGVNGPLKVGISRIADALMSEQDILRNQLALFFRDDL 4326          
BLAST of mRNA_M-pyrifera_M_contig116414.3413.1 vs. uniprot
Match: A0A7S2T8E2_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T8E2_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 9.070e-8
Identity = 35/131 (26.72%), Postives = 64/131 (48.85%), Query Frame = 1
Query:    1 TLLARFISARMATPEAMFVLRQRLGYEIGALSVVQHGISSTPHNPTDLGVDLTRAALVDTYIRPDFTPTGNLHPPTDASVPFRLTPNIQTLLTPFGVDGPLAQGATATAAAIVRRGQWFRDYLGLFFRDSI 393
            ++ A+++   + +   ++  R+R   ++G  SV+ H +      P  +    +  A+ ++   P F   GN+       VPFR+T NIQ LLTPF ++G      ++ + AI    Q    +L +FFRD +
Sbjct: 1140 SIFAQYMYKVLPSCSHLWEFRKRFATQLGLSSVISHALQVGGRTPNKMIFSRSSGAIFNSDFYPLFDGNGNVE--CSEPVPFRMTRNIQVLLTPFCLEGIFVTCMSSVSQAISAEHQTILPHLSIFFRDEL 1268          
BLAST of mRNA_M-pyrifera_M_contig116414.3413.1 vs. uniprot
Match: A0A5B8N0D4_9CHLO (Uncharacterized protein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N0D4_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 1.750e-7
Identity = 36/131 (27.48%), Postives = 62/131 (47.33%), Query Frame = 1
Query:    1 TLLARFISARMATPEAMFVLRQRLGYEIGALSVVQHGISSTPHNPTDLGVDLTRAALVDTYIRPDFTPTGNLHPPTDASVPFRLTPNIQTLLTPFGVDGPLAQGATATAAAIVRRGQWFRDYLGLFFRDSI 393
            ++ A+++   + T   ++  R+R   ++G  SV+ H +     +P  +    +  A+ ++   P F   GN+       VPFR+T NIQ LLTPF ++G       + A AI          L +FFRD +
Sbjct: 3955 SIFAQYMYKVLPTCSHLWEFRKRFATQLGLSSVISHALQVGGRSPNKIIFSRSSGAIFNSDFYPLFDSNGNVE--CSEPVPFRITRNIQVLLTPFCLEGIFVTTIASCAQAINSEVSLILPQLSIFFRDEL 4083          
BLAST of mRNA_M-pyrifera_M_contig116414.3413.1 vs. uniprot
Match: A0A6H5K7K4_9PHAE (FATC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.080e-7
Identity = 37/130 (28.46%), Postives = 63/130 (48.46%), Query Frame = 1
Query:    4 LLARFISARMATPEAMFVLRQRLGYEIGALSVVQHGISSTPHNPTDLGVDLTRAALVDTYIRPDFTPTGNLHPPTDASVPFRLTPNIQTLLTPFGVDGPLAQGATATAAAIVRRGQWFRDYLGLFFRDSI 393
            +L R++   +   EA++  R+    + G  S++ H  +     P  +  D   A +V    RP +T  G L    D  VPFRLT N+ TL++P  V+G LA    + + A++ + +    +L L  RD +
Sbjct:  293 ILTRYVHGVVKDAEAVWAFRRHFAAQAGISSLLCHIFTCGERFPHRIIFDKRTARVVSWEFRPGYTHAGLLEQAED--VPFRLTRNMSTLMSPMLVEGVLALTMVSMSGALMAKKEVLEPFLALILRDDL 420          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116414.3413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A1Y1VI44_9FUNG1.610e-1129.77Uncharacterized protein n=2 Tax=Piromyces TaxID=48... [more]
F0WGA0_9STRA3.000e-1132.82Phosphatidylinositol kinase (PIKL3) putative n=1 T... [more]
A0A1Y1WU66_9FUNG5.560e-1128.24FAT-domain-containing protein n=1 Tax=Anaeromyces ... [more]
A0A1Y2C1F7_9FUNG6.620e-1026.72Uncharacterized protein n=1 Tax=Neocallimastix cal... [more]
A0A139A4X1_GONPJ6.630e-1028.24Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]
A0A0L0HAR4_SPIPD4.250e-928.46Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A024GII8_9STRA1.470e-829.01Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A7S2T8E2_9CHLO9.070e-826.72Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A5B8N0D4_9CHLO1.750e-727.48Uncharacterized protein n=2 Tax=Chloropicon primus... [more]
A0A6H5K7K4_9PHAE2.080e-728.46FATC domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116414contigM-pyrifera_M_contig116414:167..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score62.0
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog327079.R9P3Y2
Preferred nameTRA1
KEGG koko:K08874
KEGG Pathwayko05166,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000123,GO:0000124,GO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010672,GO:0010674,GO:0016043,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016772,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0035267,GO:0036211,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046695,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051037,GO:0051038,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051321,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070209,GO:0070461,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905368,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.FATC
EggNOG OGs38FEI@33154,3N3YN@452284,3NWQJ@4751,3UY1S@5204,COG5032@1,KOG0889@2759
COG Functional cat.BDLT
Best tax levelUstilaginomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Exons1
Model size393
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.7172594-UTR-M-pyrifera_M_contig116414:166..1961622815681.7172594-UTR-M-pyrifera_M_contig116414:166..196Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116414 167..196 +
1692277519.382334-UTR-M-pyrifera_M_contig116414:166..1961692277519.382334-UTR-M-pyrifera_M_contig116414:166..196Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116414 167..196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.7316074-CDS-M-pyrifera_M_contig116414:196..5591622815681.7316074-CDS-M-pyrifera_M_contig116414:196..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116414 197..559 +
1692277519.3973765-CDS-M-pyrifera_M_contig116414:196..5591692277519.3973765-CDS-M-pyrifera_M_contig116414:196..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116414 197..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116414.3413.1prot_M-pyrifera_M_contig116414.3413.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116414 197..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116414.3413.1

>prot_M-pyrifera_M_contig116414.3413.1 ID=prot_M-pyrifera_M_contig116414.3413.1|Name=mRNA_M-pyrifera_M_contig116414.3413.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MATPEAMFVLRQRLGYEIGALSVVQHGISSTPHNPTDLGVDLTRAALVDT
YIRPDFTPTGNLHPPTDASVPFRLTPNIQTLLTPFGVDGPLAQGATATAA
AIVRRGQWFRDYLGLFFRDSI
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mRNA from alignment at M-pyrifera_M_contig116414:167..559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116414.3413.1 ID=mRNA_M-pyrifera_M_contig116414.3413.1|Name=mRNA_M-pyrifera_M_contig116414.3413.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig116414:167..559+ (Macrocystis pyrifera P11B4 male)
ACACTTCTTGCTCGATTTATTTCTGCAAGGATGGCGACACCAGAGGCAAT GTTTGTCCTGCGACAAAGGTTGGGATATGAAATTGGAGCATTGTCTGTCG TCCAACATGGCATTTCATCCACACCACACAACCCAACAGATCTTGGGGTT GACCTCACTCGTGCCGCACTTGTGGACACTTACATTCGCCCTGACTTTAC ACCAACAGGCAACTTACACCCTCCAACAGATGCCTCTGTACCTTTCCGTC TCACTCCAAACATTCAAACTCTCCTCACCCCCTTTGGAGTGGATGGACCA TTGGCACAAGGAGCAACTGCAACTGCAGCAGCAATTGTGCGTCGTGGGCA ATGGTTCCGTGACTACCTCGGCCTTTTCTTCCGCGACTCCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116414:167..559+

>mRNA_M-pyrifera_M_contig116414.3413.1 ID=mRNA_M-pyrifera_M_contig116414.3413.1|Name=mRNA_M-pyrifera_M_contig116414.3413.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig116414:167..559+ (Macrocystis pyrifera P11B4 male)
ATGGCGACACCAGAGGCAATGTTTGTCCTGCGACAAAGGTTGGGATATGA
AATTGGAGCATTGTCTGTCGTCCAACATGGCATTTCATCCACACCACACA
ACCCAACAGATCTTGGGGTTGACCTCACTCGTGCCGCACTTGTGGACACT
TACATTCGCCCTGACTTTACACCAACAGGCAACTTACACCCTCCAACAGA
TGCCTCTGTACCTTTCCGTCTCACTCCAAACATTCAAACTCTCCTCACCC
CCTTTGGAGTGGATGGACCATTGGCACAAGGAGCAACTGCAACTGCAGCA
GCAATTGTGCGTCGTGGGCAATGGTTCCGTGACTACCTCGGCCTTTTCTT
CCGCGACTCCATCATGGCGACACCAGAGGCAATGTTTGTCCTGCGACAAA
GGTTGGGATATGAAATTGGAGCATTGTCTGTCGTCCAACATGGCATTTCA
TCCACACCACACAACCCAACAGATCTTGGGGTTGACCTCACTCGTGCCGC
ACTTGTGGACACTTACATTCGCCCTGACTTTACACCAACAGGCAACTTAC
ACCCTCCAACAGATGCCTCTGTACCTTTCCGTCTCACTCCAAACATTCAA
ACTCTCCTCACCCCCTTTGGAGTGGATGGACCATTGGCACAAGGAGCAAC
TGCAACTGCAGCAGCAATTGTGCGTCGTGGGCAATGGTTCCGTGACTACC
TCGGCCTTTTCTTCCGCGACTCCATC
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