mRNA_M-pyrifera_M_contig116412.3412.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116412.3412.1
Unique NamemRNA_M-pyrifera_M_contig116412.3412.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116412.3412.1 vs. uniprot
Match: A0A2D8GIX6_9ACTN (Uncharacterized protein n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8GIX6_9ACTN)

HSP 1 Score: 88.2 bits (217), Expect = 9.630e-21
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1
Query:   70 QRKSTPKVDPKEFWGDPDLLPERIDRVQASPDVRAVLTSLGRPPLAGNETAGEHWFSMVYERAAFL 267
            Q+++ PKVDP EFWGDP  LP+ +  +  +PD +AV+ SLGR PL+G+ETA EHWFS+VYERAA L
Sbjct:   31 QKRNEPKVDPVEFWGDPAALPDPMRAIAEAPDPKAVVRSLGRVPLSGHETAAEHWFSLVYERAAVL 96          
BLAST of mRNA_M-pyrifera_M_contig116412.3412.1 vs. uniprot
Match: A0A6B1B2P3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B2P3_9ACTN)

HSP 1 Score: 85.5 bits (210), Expect = 1.200e-19
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   40 GKQQSKNQGTQRKSTPKVDPKEFWGDPDLLPERIDRVQASPDVRAVLTSLGRPPLAGNETAGEHWFSMVYERAAFL 267
            G+Q ++++G  RK+  K++P EFWGDP+LLP   + V  S D RA+L SLGRPP+ G ETA E WF++VYERAAFL
Sbjct:   29 GRQNAQSRG--RKAAAKINPIEFWGDPELLPAPEEVVAQSGDARALLNSLGRPPVPGQETAAERWFTLVYERAAFL 102          
BLAST of mRNA_M-pyrifera_M_contig116412.3412.1 vs. uniprot
Match: A0A7Y2DCK6_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DCK6_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 9.860e-11
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   88 KVDPKEFWGDPDLLPERIDRVQASPDVRAVLTSLGRPPLAGNETAGEHWFSMVYERAAFL 267
            + DP +FWGD + LPE    V  + D  A++ SLGR P+ G+E A EH+F +VYERAA L
Sbjct:   62 RFDPVKFWGDVEALPEPPRSVVTASDPYAIVQSLGRAPIPGHENASEHYFRLVYERAASL 121          
BLAST of mRNA_M-pyrifera_M_contig116412.3412.1 vs. uniprot
Match: A0A349B0Q3_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B0Q3_9ACTN)

HSP 1 Score: 62.0 bits (149), Expect = 1.810e-10
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 1
Query:  103 EFWGDPDLLPERIDRVQASPDVRAVLTSLGRPPLAGNETAGEHWFSMVYERAAFL 267
            EFWGDP  LPE  D ++ + D  AV+ SLGRPPL G E A E +F+ VY RA  L
Sbjct:   39 EFWGDPKTLPEPRDDIRITQDPSAVVRSLGRPPLPGQEQASEAYFAAVYARAVGL 93          
BLAST of mRNA_M-pyrifera_M_contig116412.3412.1 vs. uniprot
Match: A0A2E4XMA8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4XMA8_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 2.580e-10
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   73 RKSTPKVDPKEFWGDPDLLPERIDRVQASPDVRAVLTSLGRPPLAGNETAGEHWFSMVYERAAFL 267
            R+S  K DP++FWG+PDLLP+ I  +       A+ +SLGRPP++G ET+   +F  +YER+  L
Sbjct:   27 RRSRNKPDPRKFWGNPDLLPKPIYGLSTPQVTNAIPSSLGRPPISGQETSSLKYFDAIYERSVGL 91          
BLAST of mRNA_M-pyrifera_M_contig116412.3412.1 vs. uniprot
Match: A0A358A1Q1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A1Q1_9ACTN)

HSP 1 Score: 60.5 bits (145), Expect = 3.460e-10
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query:  148 VQASPDVRAVLTSLGRPPLAGNETAGEHWFSMVYERAAFL 267
            ++ +PD +AV+ SLGR PL+G+ETA EHWFS+VYERAA L
Sbjct:    4 IEEAPDPKAVVRSLGRVPLSGHETAAEHWFSLVYERAAVL 43          
BLAST of mRNA_M-pyrifera_M_contig116412.3412.1 vs. uniprot
Match: A0A2E4W0Q7_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A2E4W0Q7_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 1.120e-8
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   73 RKSTPKVDPKEFWGDPDLLPERIDRVQASPDVRAVLTSLGRPPLAGNETAGEHWFSMVYERAAFL 267
            R+S  K DP++FWG+P+ LP+ I  +   P   A+ +SLGRPP+ G ET    +   +Y+R+  L
Sbjct:   28 RRSRSKPDPRKFWGNPEALPKPIYGLSTPPVTNAIPSSLGRPPITGQETVSIKYLDAIYDRSVGL 92          
BLAST of mRNA_M-pyrifera_M_contig116412.3412.1 vs. uniprot
Match: A0A2E3XMB6_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2E3XMB6_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 3.870e-8
Identity = 25/65 (38.46%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   73 RKSTPKVDPKEFWGDPDLLPERIDRVQASPDVRAVLTSLGRPPLAGNETAGEHWFSMVYERAAFL 267
            R++  + DPK+FWG+ + LP  +  V+A    +AVL SLG+PP++G E +   + + +Y+R+A L
Sbjct:   25 RRNRNRTDPKKFWGNKEALPLPVHDVKAPSTTQAVLDSLGKPPISGQEVSSLEYLAKIYDRSAGL 89          
BLAST of mRNA_M-pyrifera_M_contig116412.3412.1 vs. uniprot
Match: A0A2E4KF25_9ACTN (Uncharacterized protein n=2 Tax=unclassified Acidimicrobiaceae TaxID=667305 RepID=A0A2E4KF25_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 5.450e-8
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   91 VDPKEFWGDPDLLPERIDRVQASPDVRAVLTSLGRPPLAGNETAGEHWFSMVYERAAFL 267
             DPK+FWG+ D LP+ +  V+     +AVL SLG+PP+ G E     +   VYER+A L
Sbjct:   31 ADPKKFWGNKDNLPQAVHDVKVPTATQAVLDSLGKPPIPGQEVPSLEYLGAVYERSAGL 89          
BLAST of mRNA_M-pyrifera_M_contig116412.3412.1 vs. uniprot
Match: A0A2E1CRL1_9ACTN (Uncharacterized protein n=6 Tax=Actinobacteria TaxID=201174 RepID=A0A2E1CRL1_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 5.970e-7
Identity = 25/65 (38.46%), Postives = 39/65 (60.00%), Query Frame = 1
Query:   73 RKSTPKVDPKEFWGDPDLLPERIDRVQASPDVRAVLTSLGRPPLAGNETAGEHWFSMVYERAAFL 267
            R++  + DPK+FWG+ + LP  +  V+     +AVL SLG+PP+ G E     +   +YER+A L
Sbjct:   25 RRNRNRTDPKKFWGNKETLPLPVHDVKVPSATQAVLDSLGKPPIPGQEVPSLEYLGEIYERSAGL 89          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116412.3412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A2D8GIX6_9ACTN9.630e-2160.61Uncharacterized protein n=7 Tax=Acidimicrobiaceae ... [more]
A0A6B1B2P3_9ACTN1.200e-1956.58Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7Y2DCK6_9ACTN9.860e-1150.00Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A349B0Q3_9ACTN1.810e-1054.55Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A2E4XMA8_9ACTN2.580e-1044.62Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A358A1Q1_9ACTN3.460e-1065.00Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2E4W0Q7_9ACTN1.120e-840.00Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
A0A2E3XMB6_9BACT3.870e-838.46Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A2E4KF25_9ACTN5.450e-844.07Uncharacterized protein n=2 Tax=unclassified Acidi... [more]
A0A2E1CRL1_9ACTN5.970e-738.46Uncharacterized protein n=6 Tax=Actinobacteria Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116412contigM-pyrifera_M_contig116412:293..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.6727753-CDS-M-pyrifera_M_contig116412:292..5591622815681.6727753-CDS-M-pyrifera_M_contig116412:292..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116412 293..559 +
1692277519.3707006-CDS-M-pyrifera_M_contig116412:292..5591692277519.3707006-CDS-M-pyrifera_M_contig116412:292..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116412 293..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116412.3412.1prot_M-pyrifera_M_contig116412.3412.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116412 293..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116412.3412.1

>prot_M-pyrifera_M_contig116412.3412.1 ID=prot_M-pyrifera_M_contig116412.3412.1|Name=mRNA_M-pyrifera_M_contig116412.3412.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
SRRKRNRPRNRGGGKQQSKNQGTQRKSTPKVDPKEFWGDPDLLPERIDRV
QASPDVRAVLTSLGRPPLAGNETAGEHWFSMVYERAAFL
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mRNA from alignment at M-pyrifera_M_contig116412:293..559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116412.3412.1 ID=mRNA_M-pyrifera_M_contig116412.3412.1|Name=mRNA_M-pyrifera_M_contig116412.3412.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig116412:293..559+ (Macrocystis pyrifera P11B4 male)
TCCCGCCGCAAGCGCAACCGACCCCGCAACCGCGGCGGCGGCAAGCAGCA GTCCAAGAACCAGGGCACACAACGCAAGTCCACACCCAAGGTCGATCCCA AGGAGTTCTGGGGCGATCCCGACCTGCTGCCCGAGCGGATCGATCGCGTC CAGGCGTCGCCCGACGTGCGTGCCGTGCTCACCTCGCTGGGTCGTCCACC GCTCGCGGGCAACGAGACGGCGGGCGAGCACTGGTTCTCGATGGTCTACG AGCGGGCCGCGTTTCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116412:293..559+

>mRNA_M-pyrifera_M_contig116412.3412.1 ID=mRNA_M-pyrifera_M_contig116412.3412.1|Name=mRNA_M-pyrifera_M_contig116412.3412.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig116412:293..559+ (Macrocystis pyrifera P11B4 male)
TCCCGCCGCAAGCGCAACCGACCCCGCAACCGCGGCGGCGGCAAGCAGCA
GTCCAAGAACCAGGGCACACAACGCAAGTCCACACCCAAGGTCGATCCCA
AGGAGTTCTGGGGCGATCCCGACCTGCTGCCCGAGCGGATCGATCGCGTC
CAGGCGTCGCCCGACGTGCGTGCCGTGCTCACCTCGCTGGGTCGTCCACC
GCTCGCGGGCAACGAGACGGCGGGCGAGCACTGGTTCTCGATGGTCTACG
AGCGGGCCGCGTTTCTCTCCCGCCGCAAGCGCAACCGACCCCGCAACCGC
GGCGGCGGCAAGCAGCAGTCCAAGAACCAGGGCACACAACGCAAGTCCAC
ACCCAAGGTCGATCCCAAGGAGTTCTGGGGCGATCCCGACCTGCTGCCCG
AGCGGATCGATCGCGTCCAGGCGTCGCCCGACGTGCGTGCCGTGCTCACC
TCGCTGGGTCGTCCACCGCTCGCGGGCAACGAGACGGCGGGCGAGCACTG
GTTCTCGATGGTCTACGAGCGGGCCGCGTTTCTC
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