mRNA_M-pyrifera_M_contig116408.3410.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116408.3410.1
Unique NamemRNA_M-pyrifera_M_contig116408.3410.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116408.3410.1 vs. uniprot
Match: A0A7S1CSG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CSG3_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.150e-25
Identity = 75/144 (52.08%), Postives = 94/144 (65.28%), Query Frame = 1
Query:    1 RTQVLLVRELTRGIMRAFNKRFAELQRAKGDERDRILEKGRRIRAIAAEIKEEVPVFEPTLAPDERPESVLEATEEEIGFGPYVSEEERKRLEXXXXXXXXXXXXXRDDAPDRALMDMMGGTLAGKDPVRALEEELEAEKEPWM 432
            RTQ+LL++EL R +   FN  F EL+ +K DE D+I  +  RIR I  E+ EE   F P L  DE PE VL+ T+EEIGF  YV+E ER+   XXXXXXXXX    +DDAP+RAL DMM GTL  KD +  LE++L   +E WM
Sbjct:    5 RTQILLLQELARLVRVRFNAAFDELRHSKEDEMDKIAGRNARIREILDEMGEEAEFFVPALGDDEVPERVLDVTQEEIGFERYVTEAERRXXXXXXXXXXXXAGKDQDDAPERALQDMMNGTLEAKDELSKLEQDLV--REAWM 146          
BLAST of mRNA_M-pyrifera_M_contig116408.3410.1 vs. uniprot
Match: A0A5A8CPH2_CAFRO (Cilia- and flagella-associated protein 43 n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CPH2_CAFRO)

HSP 1 Score: 96.7 bits (239), Expect = 1.830e-20
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 1
Query:    1 RTQVLLVRELTRGIMRAFNKRFAELQRAKGDERDRILEKGRRIRAIAAEIKEEVPVFEPTLAPDERPESVLEATEEEIGFGPYVSEEERKRLEXXXXXXXXXXXXXRDDAPDRALMDMMGGTLAGKDPVRALEEELEAEKEPWM 432
            R Q+ L+ +LTR + R+FN+RF  L+RAK D+ +RI E+ +R   I   +     ++EP    DERPE++LEA+ EE+GF  +      K  E             +DDAP+RAL DMM GTL  KD V+  E+ + A ++PWM
Sbjct: 1617 RLQIRLLEQLTREVARSFNRRFDALKRAKLDDVERISERNKRTTKILELLGRTEELYEPPRFEDERPEALLEASREEVGFDEWEPPAVVKAREEEARRRAEEAAKHKDDAPERALDDMMSGTLEEKDEVQRAEDAMRAGRQPWM 1760          
BLAST of mRNA_M-pyrifera_M_contig116408.3410.1 vs. uniprot
Match: A0A2R5GS38_9STRA (Cilia- and flagella-associated protein 43 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GS38_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.500e-11
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    1 RTQVLLVRELTRGIMRAFNKRFAELQRAKGDERDRILEKGRRIRAIAAEIKEEVPVFEPTLAPDERPESVLEATEEEIGFGPYVSEEERKRL-EXXXXXXXXXXXXXRDDAPDRALMDMMGGTLAGKDPVRALEEELEAEKEPWM 432
            R Q++++REL R +M+AFN+RF ++   K D  +RI  +  RI  I  E+  E  V      P ER ESVLE ++EEIG   Y+S+ ER+R+     XXXXX     +D+   RAL DMM GTL     +   E+ +E  +  WM
Sbjct: 1031 RHQLVMLRELQRKLMQAFNERFDKVVEEKEDAVERITSRYERINEILRELSREEEVVPNFWHPSERAESVLEVSQEEIGVEKYLSKAERERVAREEEXXXXXEAEAAKDNMGARALDDMMNGTLEAARELSLAEKTME--RPAWM 1173          
BLAST of mRNA_M-pyrifera_M_contig116408.3410.1 vs. uniprot
Match: A0A813FMP4_POLGL (Cilia- and flagella-associated protein 43 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FMP4_POLGL)

HSP 1 Score: 68.2 bits (165), Expect = 1.590e-10
Identity = 54/145 (37.24%), Postives = 74/145 (51.03%), Query Frame = 1
Query:    1 RTQVLLVRELTRGIMRAFNKRFAELQRAKGDERDRILEKGRRIRAIAAEIKEEVPVFEPTLAPDERPESVLEATEEEIGFGPYVSEEERKRLEXXXXXXXXXXXXXRD-DAPDRALMDMMGGTLAGKDPVRALEEELEAEKEPWM 432
            R Q+ L++ L       FN+ F   +  K    D++ EK  RIR+I  E++    V EP L   E  E+VL+  ++EI    Y+S EER  LE             R+ DA  RAL+ MMGGTL  K  + ALE  +  E+EPWM
Sbjct: 1084 RLQIYLLQSLAAEYRMHFNELFEACKVDKRSIVDQMKEKCARIRSILGELQITENVPEPELGEKEEAEAVLKVQDQEISAAKYISPEERAALEKARLKEEERLRQLRENDAGQRALVQMMGGTLKTKKDLTALE--ITLEREPWM 1226          
BLAST of mRNA_M-pyrifera_M_contig116408.3410.1 vs. uniprot
Match: A0A812MDU8_SYMPI (Cilia- and flagella-associated protein 43 n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812MDU8_SYMPI)

HSP 1 Score: 67.4 bits (163), Expect = 2.980e-10
Identity = 56/145 (38.62%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    1 RTQVLLVRELTRGIMRAFNKRFAELQRAKGDERDRILEKGRRIRAIAAEIKEEVPVFEPTLAPDERPESVLEATEEEIGFGPYVSEEERKRLEXXXXXXXXXXXXXRD-DAPDRALMDMMGGTLAGKDPVRALEEELEAEKEPWM 432
            R Q+ L++ L+      FN+ F   Q  K +  D I EK  RIR I  E++ E  V EPTL   E  +SVL+  + EI    ++S EE+K LE             R+ DA  RAL+ MMGGTL  K  +  LE  +  +KEPWM
Sbjct: 1063 RLQIHLLQSLSADYRLHFNELFKACQSDKKNIIDGIKEKCSRIRQILGELQIEEEVPEPTLHEVEDADSVLKVKDHEITVEKWISPEEKKALEEAAAKEEERLRQLRENDAGQRALVQMMGGTLKTKKDLTPLE--IVLDKEPWM 1205          
BLAST of mRNA_M-pyrifera_M_contig116408.3410.1 vs. uniprot
Match: A0A812KAM1_9DINO (Cfap43 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812KAM1_9DINO)

HSP 1 Score: 66.6 bits (161), Expect = 4.430e-10
Identity = 55/145 (37.93%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    1 RTQVLLVRELTRGIMRAFNKRFAELQRAKGDERDRILEKGRRIRAIAAEIKEEVPVFEPTLAPDERPESVLEATEEEIGFGPYVSEEERKRLEXXXXXXXXXXXXXRD-DAPDRALMDMMGGTLAGKDPVRALEEELEAEKEPWM 432
            R Q+ L++ L+      FN+ F   Q  K +  D I EK  RIR I  E++ E  V EPTL   E  +SVL+  + EI    ++S EE+K +E             R+ DA  RAL+ MMGGTL  K  +  LE  +  +KEPWM
Sbjct:  178 RLQIHLLQSLSADYRLHFNELFKACQGDKKNIIDGIKEKCSRIRQILGELQIEEEVPEPTLQEVEDSDSVLKVQDREITVEKWISPEEKKAMEEAAAKEEERLRQLRENDAGQRALVQMMGGTLKTKKDLTPLE--IVLDKEPWM 320          
BLAST of mRNA_M-pyrifera_M_contig116408.3410.1 vs. uniprot
Match: A0A812R911_9DINO (Cilia- and flagella-associated protein 43 n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812R911_9DINO)

HSP 1 Score: 66.6 bits (161), Expect = 5.420e-10
Identity = 55/145 (37.93%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    1 RTQVLLVRELTRGIMRAFNKRFAELQRAKGDERDRILEKGRRIRAIAAEIKEEVPVFEPTLAPDERPESVLEATEEEIGFGPYVSEEERKRLEXXXXXXXXXXXXXRD-DAPDRALMDMMGGTLAGKDPVRALEEELEAEKEPWM 432
            R Q+ L++ L+      FN+ F   Q  K +  D I EK  RIR I  E++ E  V EPTL   E  +SVL+  + EI    ++S EE+K +E             R+ DA  RAL+ MMGGTL  K  +  LE  +  +KEPWM
Sbjct:  687 RLQIHLLQSLSADYRLHFNELFKACQGDKKNIIDGIKEKCSRIRQILGELQIEEEVPEPTLQEVEDADSVLKVQDHEITVEKWISPEEKKAMEEAAAKEEERLRQLRENDAGQRALVQMMGGTLKTKKDLTPLE--IVLDKEPWM 829          
BLAST of mRNA_M-pyrifera_M_contig116408.3410.1 vs. uniprot
Match: A0A225UV74_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UV74_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.100e-10
Identity = 51/139 (36.69%), Postives = 70/139 (50.36%), Query Frame = 1
Query:   34 RGIMRAFNKRFAELQRAKGDERDRILEKGRRIRAIAAEIK---EEVPVFEPTLAPDERPESVLEATEEEIGFGPYVSEEERKRLEXXXXXXXXXXXXXR-DDAPDRALMDMMGGTL-AGKDPVRALEEELEAEKEPWMV 435
            R +  AFN  F EL R K +  ++I  K  R+  I  E+        +F P  AP+E+ +S+L+ + EE+   PY + E RK+ E             + DD   RALMDMM GTL   KDP+ A E      KEPWM+
Sbjct:    9 RALQSAFNAEFIELVRQKENTMEQIESKNVRVTEITTELNAGANTADLFRPQWAPEEKADSILKVSSEEMTQKPYETAERRKQREREAQEAAEKEKARKKDDVGGRALMDMMDGTLEVKKDPLAAQE----LVKEPWML 143          
BLAST of mRNA_M-pyrifera_M_contig116408.3410.1 vs. uniprot
Match: A0A1Y3NWD6_PIRSE (Cilia- and flagella-associated protein 43 n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NWD6_PIRSE)

HSP 1 Score: 65.1 bits (157), Expect = 1.850e-9
Identity = 55/127 (43.31%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    1 RTQVLLVRELTRGIMRAFNKRFAELQRAKGDERDRILEKGRRIRAIAAEIKEEVPVFEPTLAPDERPESVLEATEEEIGFGPYVSEEERKRLEXXXXXXXXXXXXXRDDA-PDRALMDMMGGTLAGK 378
            R Q+ ++ E+   I   FN++F E  ++K D   +I EK  RI+ I  E++ +  +F+P+L  DE P+S L   E EI    Y++EEE+K+L XXXXXXXXXX    +D   +RAL +MM GTLA K
Sbjct:  744 RIQIFILEEIIIDIKEQFNEKFDEKVKSKNDILSKIEEKNERIQTIIDELQIKEEIFQPSLDNDEIPDSCLMLDESEIKAEKYLTEEEKKKLXXXXXXXXXXXKERLEDNWQERALSEMMNGTLADK 870          
BLAST of mRNA_M-pyrifera_M_contig116408.3410.1 vs. uniprot
Match: A0A812UPI9_9DINO (Cfap43 protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812UPI9_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 2.480e-9
Identity = 55/145 (37.93%), Postives = 74/145 (51.03%), Query Frame = 1
Query:    1 RTQVLLVRELTRGIMRAFNKRFAELQRAKGDERDRILEKGRRIRAIAAEIKEEVPVFEPTLAPDERPESVLEATEEEIGFGPYVSEEERKRLEXXXXXXXXXXXXXRD-DAPDRALMDMMGGTLAGKDPVRALEEELEAEKEPWM 432
            R Q+ L++ L+      FN+ F   Q  K +  D I EK  RIR I  E++ E  V EPTL   E  +SVL+  + EI    ++S EE+K  E             R+ DA  RAL+ MMGGTL  K  +  LE  +  +KEPWM
Sbjct:  318 RLQIHLLQSLSADYRWHFNELFKACQGDKKNIIDGIKEKCSRIRQILGELQIEEEVPEPTLQEVEDSDSVLKVQDREITVEKWISPEEKKAREEAAAKEEERLRQLRENDAGQRALVQMMGGTLKTKKDLTPLE--IVLDKEPWM 460          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116408.3410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A7S1CSG3_9STRA1.150e-2552.08Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5A8CPH2_CAFRO1.830e-2040.28Cilia- and flagella-associated protein 43 n=6 Tax=... [more]
A0A2R5GS38_9STRA2.500e-1140.00Cilia- and flagella-associated protein 43 n=1 Tax=... [more]
A0A813FMP4_POLGL1.590e-1037.24Cilia- and flagella-associated protein 43 n=1 Tax=... [more]
A0A812MDU8_SYMPI2.980e-1038.62Cilia- and flagella-associated protein 43 n=1 Tax=... [more]
A0A812KAM1_9DINO4.430e-1037.93Cfap43 protein n=1 Tax=Symbiodinium sp. CCMP2456 T... [more]
A0A812R911_9DINO5.420e-1037.93Cilia- and flagella-associated protein 43 n=1 Tax=... [more]
A0A225UV74_9STRA6.100e-1036.69Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A1Y3NWD6_PIRSE1.850e-943.31Cilia- and flagella-associated protein 43 n=1 Tax=... [more]
A0A812UPI9_9DINO2.480e-937.93Cfap43 protein n=3 Tax=Symbiodinium TaxID=2949 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116408contigM-pyrifera_M_contig116408:127..561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue2e-10
Seed eggNOG ortholog5911.EAR97028
Preferred nameCFAP43
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0006469,GO:0008150,GO:0009892,GO:0009966,GO:0009968,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0010941,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0023051,GO:0023057,GO:0030234,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0033673,GO:0042325,GO:0042326,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043549,GO:0044092,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0060548,GO:0065007,GO:0065009,GO:0080090,GO:0098772,GO:1902041,GO:1902042,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.WD40 repeats
EggNOG OGs2CME1@1,2QQ39@2759,3ZAZR@5878
COG Functional cat.S
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.563327-CDS-M-pyrifera_M_contig116408:126..5611622815681.563327-CDS-M-pyrifera_M_contig116408:126..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116408 127..561 -
1692277519.3067389-CDS-M-pyrifera_M_contig116408:126..5611692277519.3067389-CDS-M-pyrifera_M_contig116408:126..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116408 127..561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116408.3410.1prot_M-pyrifera_M_contig116408.3410.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116408 127..561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116408.3410.1

>prot_M-pyrifera_M_contig116408.3410.1 ID=prot_M-pyrifera_M_contig116408.3410.1|Name=mRNA_M-pyrifera_M_contig116408.3410.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
RTQVLLVRELTRGIMRAFNKRFAELQRAKGDERDRILEKGRRIRAIAAEI
KEEVPVFEPTLAPDERPESVLEATEEEIGFGPYVSEEERKRLEEEERRRK
EEESRNRDDAPDRALMDMMGGTLAGKDPVRALEEELEAEKEPWMV
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mRNA from alignment at M-pyrifera_M_contig116408:127..561-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116408.3410.1 ID=mRNA_M-pyrifera_M_contig116408.3410.1|Name=mRNA_M-pyrifera_M_contig116408.3410.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig116408:127..561- (Macrocystis pyrifera P11B4 male)
CGTACACAAGTCTTGTTGGTACGTGAATTGACGCGTGGCATCATGCGTGC ATTCAACAAGCGTTTTGCAGAACTGCAACGAGCAAAAGGCGACGAACGTG ATCGGATCTTGGAGAAAGGTCGTCGCATTCGTGCCATTGCAGCTGAAATC AAGGAGGAAGTGCCAGTGTTTGAACCAACTCTTGCTCCAGATGAACGCCC AGAGAGTGTGTTGGAAGCCACAGAGGAAGAAATTGGGTTTGGACCATATG TGAGTGAGGAAGAAAGAAAACGGTTGGAGGAAGAAGAGAGGAGGAGGAAA GAAGAAGAGTCTAGAAACCGGGATGATGCTCCTGATCGTGCATTGATGGA TATGATGGGTGGAACGTTGGCAGGAAAGGATCCTGTGCGTGCATTGGAGG AAGAGTTGGAAGCAGAGAAGGAACCATGGATGGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116408:127..561-

>mRNA_M-pyrifera_M_contig116408.3410.1 ID=mRNA_M-pyrifera_M_contig116408.3410.1|Name=mRNA_M-pyrifera_M_contig116408.3410.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig116408:127..561- (Macrocystis pyrifera P11B4 male)
CGTACACAAGTCTTGTTGGTACGTGAATTGACGCGTGGCATCATGCGTGC
ATTCAACAAGCGTTTTGCAGAACTGCAACGAGCAAAAGGCGACGAACGTG
ATCGGATCTTGGAGAAAGGTCGTCGCATTCGTGCCATTGCAGCTGAAATC
AAGGAGGAAGTGCCAGTGTTTGAACCAACTCTTGCTCCAGATGAACGCCC
AGAGAGTGTGTTGGAAGCCACAGAGGAAGAAATTGGGTTTGGACCATATG
TGAGTGAGGAAGAAAGAAAACGGTTGGAGGAAGAAGAGAGGAGGAGGAAA
GAAGAAGAGTCTAGAAACCGGGATGATGCTCCTGATCGTGCATTGATGGA
TATGATGGGTGGAACGTTGGCAGGAAAGGATCCTGTGCGTGCATTGGAGG
AAGAGTTGGAAGCAGAGAAGGAACCATGGATGGTTCGTACACAAGTCTTG
TTGGTACGTGAATTGACGCGTGGCATCATGCGTGCATTCAACAAGCGTTT
TGCAGAACTGCAACGAGCAAAAGGCGACGAACGTGATCGGATCTTGGAGA
AAGGTCGTCGCATTCGTGCCATTGCAGCTGAAATCAAGGAGGAAGTGCCA
GTGTTTGAACCAACTCTTGCTCCAGATGAACGCCCAGAGAGTGTGTTGGA
AGCCACAGAGGAAGAAATTGGGTTTGGACCATATGTGAGTGAGGAAGAAA
GAAAACGGTTGGAGGAAGAAGAGAGGAGGAGGAAAGAAGAAGAGTCTAGA
AACCGGGATGATGCTCCTGATCGTGCATTGATGGATATGATGGGTGGAAC
GTTGGCAGGAAAGGATCCTGTGCGTGCATTGGAGGAAGAGTTGGAAGCAG
AGAAGGAACCATGGATGGTT
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