mRNA_M-pyrifera_M_contig116407.3409.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116407.3409.1
Unique NamemRNA_M-pyrifera_M_contig116407.3409.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116407.3409.1 vs. uniprot
Match: B8C8T8_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8T8_THAPS)

HSP 1 Score: 94.7 bits (234), Expect = 6.510e-22
Identity = 64/148 (43.24%), Postives = 83/148 (56.08%), Query Frame = 1
Query:    1 IRGLGGLRGLRKLDLQSNRLTLVEGLXXXXXX-EELYLGHNAIE----TLHPGVFASLTSLHTLDLSSNRLSALLP-AHXXXXXXXXXXXXXXXAIASFDDVIPALQEATPELQTLYLEHNPLARAFDYRIRLARRIPTLTQIDATAV 426
            I GLG L  LR+LD+QSNRLT +E L       EELYL HN I+    +   G+    T L+T+DLS NRL+   P AH                I +F++V P    A  EL  +YLE+NP+A  F+YR +LA  IP+LTQIDA  +
Sbjct:   15 IEGLGKLTKLRRLDVQSNRLTKIENLTSQVDTLEELYLAHNGIDVEGASCETGLALPFTQLNTIDLSRNRLTNSTPFAHLKSLTDLWISGNE---IKTFEEVEPLT--ALTELDGVYLEYNPVASEFEYRKKLAEMIPSLTQIDANMI 157          
BLAST of mRNA_M-pyrifera_M_contig116407.3409.1 vs. uniprot
Match: A0A7S4WB46_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WB46_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.530e-17
Identity = 57/144 (39.58%), Postives = 77/144 (53.47%), Query Frame = 1
Query:   10 LGGLRGLRKLDLQSNRLTLVEGLXXXXXX-EELYLGHNAIE----TLHPGVFASLTSLHTLDLSSNRLSALLPAHXXXXXXXXXXXXXXXAIASFDDVIPALQEATPE---LQTLYLEHNPLARAFDYRIRLARRIPTLTQIDA 417
            L  L  LR+LD+QSNRLT +E L       EELYL +N I     T   G+    + L+TLDLS NRL+   P                  I +FDDV P     + +   L+ +YLE+NP+++ FDYR R+A  +P+L QIDA
Sbjct:   33 LSQLTKLRRLDVQSNRLTAIENLSSQVDTLEELYLANNGISDEGATCETGLALPFSKLNTLDLSKNRLTTTTP--FVHIHSLEELWLSSNDIKTFDDVEPIAILGSRDGACLEGIYLEYNPVSKEFDYRKRIAAMLPSLNQIDA 174          
BLAST of mRNA_M-pyrifera_M_contig116407.3409.1 vs. uniprot
Match: A0A7S0GI44_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GI44_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.600e-16
Identity = 57/147 (38.78%), Postives = 79/147 (53.74%), Query Frame = 1
Query:   19 LRGLRKLDLQSNRLTLVEGLXXXXXX-EELYLGHNAIETLHPGVFA----------SLTSLHTLDLSSNRLSALLPAHXXXXXXXXXXXXXXXAIASFDDVIPALQEATPELQTLYLEHNPLARAFDYRIRLARRIPTLTQIDATAV 426
            L  L++LD+QSNRLT +  L       EELYL  N I     G+FA          S ++L+TLDLS N+L+     H                IA+F+D +  L+  T  L+ +Y+E+NP+A  FDYR  L++ +P LTQIDAT V
Sbjct:   30 LTKLKRLDVQSNRLTSISNLSSQTATLEELYLADNGITD--EGLFADIETKTGLSQSFSTLNTLDLSKNKLATT--KHFSHLTTLEELWLSTNDIANFEDGVHPLESLT-NLEGIYMEYNPIASQFDYRTTLSKVVPNLTQIDATMV 171          
BLAST of mRNA_M-pyrifera_M_contig116407.3409.1 vs. uniprot
Match: A0A7S1VWU0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VWU0_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.170e-16
Identity = 60/148 (40.54%), Postives = 78/148 (52.70%), Query Frame = 1
Query:    1 IRGLGGLRGLRKLDLQSNRLTLVEGLXXXXXX--EELYLGHNAI--ETLHPGVFASLTSLHTLDLSSNRLSALLP-AHXXXXXXXXXXXXXXXAIASFDDVIPALQEATPELQTLYLEHNPLARAFD-YRIRLARRIPTLTQIDATAV 426
            I GL  L  LR+LD+QSNRLT +EGL        EELYL HN I  E    G+    T L  +D+S NRL++  P AH                + S DD+  +L   T +L  +YLE+NPL +    YR RL   IP+L+QIDA  +
Sbjct:   18 ISGLESLTKLRRLDVQSNRLTTLEGLTTSQVDTLEELYLSHNGITNEGASIGLSLPFTKLSIIDMSRNRLTSTAPFAHLGASLEDLWVSGNQ--MESIDDLAESLASLT-KLDVIYLEYNPLQKGDPLYRKRLKELIPSLSQIDANMI 162          
BLAST of mRNA_M-pyrifera_M_contig116407.3409.1 vs. uniprot
Match: A0A812L2D6_9DINO (PPP1R7 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A812L2D6_9DINO)

HSP 1 Score: 75.1 bits (183), Expect = 5.240e-13
Identity = 59/126 (46.83%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   46 QSNRLTLVEGLXXXXXXEELYLGHNAIETLHPGVFASLTSLHTLDLSSNRLSALLPAHXXXXXXXXXXXXXXXAIASFDDVIPALQEATPELQTLYLEHNPLARAFDYRIRLARRIPTLTQIDATA 423
            QSNRLT +EGL      EEL+LGHNAIET+          L TLDL+ N++S +    XXXXXXXXXX      +               EL+TLYLEHNP+AR   YR  +A  +P LTQ+DAT+
Sbjct:  347 QSNRLTKIEGLSTLTKLEELFLGHNAIETIE----GLERCLKTLDLTRNQISKIENVAXXXXXXXXXXLEPLKGLG--------------ELRTLYLEHNPVARLSGYRETVASELPQLTQLDATS 454          
BLAST of mRNA_M-pyrifera_M_contig116407.3409.1 vs. uniprot
Match: K0T6R4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T6R4_THAOC)

HSP 1 Score: 72.8 bits (177), Expect = 3.340e-12
Identity = 47/114 (41.23%), Postives = 60/114 (52.63%), Query Frame = 1
Query:   97 EELYLGHNAIE----TLHPGVFASLTSLHTLDLSSNRLSALLPAHXXXXXXXXXXXXXXXAIASFDDVIPALQEATPELQTLYLEHNPLARAFDYRIRLARRIPTLTQIDATAV 426
            EELYL HN I     T+  G+    T L+TLDLSSNRL+   P                  I +FDDV          L  +YLEHNP+A  F+YR++L + IP+LTQIDA  +
Sbjct:  287 EELYLAHNGITVEGATVESGLALKFTQLNTLDLSSNRLTDASPLSHLTSLTDLWISSND--IKTFDDV--QXXXXXXXLDGIYLEHNPVASDFEYRMQLTKIIPSLTQIDANMI 396          
BLAST of mRNA_M-pyrifera_M_contig116407.3409.1 vs. uniprot
Match: A0A835IFF3_9MAGN (Uncharacterized protein n=2 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IFF3_9MAGN)

HSP 1 Score: 68.2 bits (165), Expect = 1.060e-10
Identity = 50/143 (34.97%), Postives = 71/143 (49.65%), Query Frame = 1
Query:   10 LGGLRGLRKLDLQSNRLTLVEGLXXXXXXEELYLGHNAIETLHPGVFASLTSLHTLDLSSNRLSAL-----LPAHXXXXXXXXXXXXXXX--AIASFDDVIPALQEATPELQTLYLEHNPLARAFDYRIRLARRIPTLTQIDA 417
            L GL+ +RK+ LQSNRLT + G       EELY     I  +     ++L +L  LD+SSN+L+A+     L  H                  IAS D +  AL  +  +L T+Y+EHNP A + +Y   L +  P L QID+
Sbjct:  188 LCGLKCIRKISLQSNRLTNMTGFQDCVALEELYXXXXGISKMEG--LSTLVNLRILDISSNKLTAVDDIEKLTRHSYGLLLCRLEDLWMNDNQIASLDGLDLALAGSRDKLTTIYVEHNPCANSPNYTKTLRQFFPNLEQIDS 328          
BLAST of mRNA_M-pyrifera_M_contig116407.3409.1 vs. uniprot
Match: A0A7S4AVP6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AVP6_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.240e-9
Identity = 49/133 (36.84%), Postives = 67/133 (50.38%), Query Frame = 1
Query:   97 EELYLGHNAIETLHPGVFASL----------TSLHTLDLSSNRLSALL-----PAHXXXXXXXXXXXXXXXA---IASFDDVIPALQEAT-----PELQTLYLEHNPLARAFDYRIRLARRIPTLTQIDATAV 426
            EELYLGHN ++        SL          + L+ LDLS NRL+        P +               +   I  F+ V P L+EA+     P+L+TLYLE+NP+A  F+YR +LA  +PTL QIDAT +
Sbjct:  305 EELYLGHNGLDNDGISGLISLMGRSDSTLIFSKLNVLDLSRNRLTTAASLVVDPKNDNVFGEWPTLEELWLSGNSIEDFEAVYP-LKEASERNHLPQLETLYLEYNPVASHFEYRKKLAEFVPTLEQIDATKI 436          
BLAST of mRNA_M-pyrifera_M_contig116407.3409.1 vs. uniprot
Match: A0A8M8VB25_SESIN (protein phosphatase 1 regulatory subunit pprA n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A8M8VB25_SESIN)

HSP 1 Score: 62.8 bits (151), Expect = 1.000e-8
Identity = 48/158 (30.38%), Postives = 68/158 (43.04%), Query Frame = 1
Query:   10 LGGLRGLRKLDLQSNRLTLVEGLXXXXXXE----------------------ELYLGHNAIETLHPGVFASLTSLHTLDLSSNRLSALLPAHXXXXXXXXXXXXXXXAIASFDDVIPALQEATPELQTLYLEHNPLARAFDYRIRLARRIPTLTQIDA 417
            L GL+ ++KL LQSNRLT + GL                             ELYL HN IE +     ++L +L  LD+SSN+L  +                    I S D +  A+  +   L T+YLE NP A + +Y   L +  P + QID+
Sbjct:  233 LCGLKCIKKLSLQSNRLTSISGLESCCLISYFSMKXXXXXXXXXXXXXXXXXELYLSHNGIEKMEG--LSTLVNLRVLDVSSNKLKEI--NDIKNLAKLEDLWLNDNQITSLDSIAEAVASSRESLTTIYLERNPCANSPNYISTLRQIFPKIQQIDS 386          
BLAST of mRNA_M-pyrifera_M_contig116407.3409.1 vs. uniprot
Match: A0A482RXF1_9ARCH (Leucine-rich repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXF1_9ARCH)

HSP 1 Score: 56.6 bits (135), Expect = 1.030e-6
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  265 AIASFDDVIPALQEATPELQTLYLEHNPLARAFDYRIRLARRIPTLTQIDATAVPR 432
            A++SFD + P  +   P L  LYLEH+P+A+ F+YR++LA+ IP+L Q+DAT V R
Sbjct:  210 ALSSFDALTPFTK--LPRLTCLYLEHSPIAKDFEYRMQLAKMIPSLEQLDATNVHR 263          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116407.3409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
B8C8T8_THAPS6.510e-2243.24Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S4WB46_9STRA4.530e-1739.58Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S0GI44_9STRA1.600e-1638.78Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1VWU0_9STRA8.170e-1640.54Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A812L2D6_9DINO5.240e-1346.83PPP1R7 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A... [more]
K0T6R4_THAOC3.340e-1241.23Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A835IFF3_9MAGN1.060e-1034.97Uncharacterized protein n=2 Tax=Coptis chinensis T... [more]
A0A7S4AVP6_9STRA4.240e-936.84Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A8M8VB25_SESIN1.000e-830.38protein phosphatase 1 regulatory subunit pprA n=1 ... [more]
A0A482RXF1_9ARCH1.030e-650.00Leucine-rich repeat domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116407contigM-pyrifera_M_contig116407:123..560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog35128.Thaps19351
KEGG koko:K17550,ko:K19750
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Leucine Rich repeats (2 copies)
EggNOG OGs2XC74@2836,COG4886@1,KOG0531@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-21_002350.1
COG Functional cat.T
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko04812
Exons1
Model size438
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.5302553-CDS-M-pyrifera_M_contig116407:122..5601622815681.5302553-CDS-M-pyrifera_M_contig116407:122..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116407 123..560 -
1692277519.2964954-CDS-M-pyrifera_M_contig116407:122..5601692277519.2964954-CDS-M-pyrifera_M_contig116407:122..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116407 123..560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116407.3409.1prot_M-pyrifera_M_contig116407.3409.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116407 123..560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116407.3409.1

>prot_M-pyrifera_M_contig116407.3409.1 ID=prot_M-pyrifera_M_contig116407.3409.1|Name=mRNA_M-pyrifera_M_contig116407.3409.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
IRGLGGLRGLRKLDLQSNRLTLVEGLEALEALEELYLGHNAIETLHPGVF
ASLTSLHTLDLSSNRLSALLPAHLEGLRALKDLWLSANAIASFDDVIPAL
QEATPELQTLYLEHNPLARAFDYRIRLARRIPTLTQIDATAVPRE*
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mRNA from alignment at M-pyrifera_M_contig116407:123..560-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116407.3409.1 ID=mRNA_M-pyrifera_M_contig116407.3409.1|Name=mRNA_M-pyrifera_M_contig116407.3409.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig116407:123..560- (Macrocystis pyrifera P11B4 male)
ATTCGGGGGTTGGGAGGGCTGCGGGGGCTTCGGAAACTGGACCTGCAGAG CAACCGTCTGACGCTGGTGGAAGGGCTGGAGGCGCTGGAGGCGTTGGAGG AGCTGTATTTGGGGCACAATGCGATCGAAACATTGCATCCGGGCGTCTTT GCTTCGCTCACCTCCCTGCACACGCTGGACCTGAGCAGCAATCGGCTCTC TGCGCTGCTTCCCGCCCACCTCGAAGGCCTCCGGGCGCTCAAAGACCTGT GGCTCTCCGCAAACGCCATCGCGTCCTTTGATGACGTCATCCCAGCTCTC CAGGAAGCCACCCCAGAACTCCAGACCCTCTACCTCGAACACAACCCGCT CGCAAGGGCGTTCGACTACAGAATCAGACTCGCAAGGAGAATCCCGACGC TCACCCAAATTGACGCCACCGCCGTACCCAGGGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116407:123..560-

>mRNA_M-pyrifera_M_contig116407.3409.1 ID=mRNA_M-pyrifera_M_contig116407.3409.1|Name=mRNA_M-pyrifera_M_contig116407.3409.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig116407:123..560- (Macrocystis pyrifera P11B4 male)
ATTCGGGGGTTGGGAGGGCTGCGGGGGCTTCGGAAACTGGACCTGCAGAG
CAACCGTCTGACGCTGGTGGAAGGGCTGGAGGCGCTGGAGGCGTTGGAGG
AGCTGTATTTGGGGCACAATGCGATCGAAACATTGCATCCGGGCGTCTTT
GCTTCGCTCACCTCCCTGCACACGCTGGACCTGAGCAGCAATCGGCTCTC
TGCGCTGCTTCCCGCCCACCTCGAAGGCCTCCGGGCGCTCAAAGACCTGT
GGCTCTCCGCAAACGCCATCGCGTCCTTTGATGACGTCATCCCAGCTCTC
CAGGAAGCCACCCCAGAACTCCAGACCCTCTACCTCGAACACAACCCGCT
CGCAAGGGCGTTCGACTACAGAATCAGACTCGCAAGGAGAATCCCGACGC
TCACCCAAATTGACGCCACCGCCGTACCCAGGGAGTGAATTCGGGGGTTG
GGAGGGCTGCGGGGGCTTCGGAAACTGGACCTGCAGAGCAACCGTCTGAC
GCTGGTGGAAGGGCTGGAGGCGCTGGAGGCGTTGGAGGAGCTGTATTTGG
GGCACAATGCGATCGAAACATTGCATCCGGGCGTCTTTGCTTCGCTCACC
TCCCTGCACACGCTGGACCTGAGCAGCAATCGGCTCTCTGCGCTGCTTCC
CGCCCACCTCGAAGGCCTCCGGGCGCTCAAAGACCTGTGGCTCTCCGCAA
ACGCCATCGCGTCCTTTGATGACGTCATCCCAGCTCTCCAGGAAGCCACC
CCAGAACTCCAGACCCTCTACCTCGAACACAACCCGCTCGCAAGGGCGTT
CGACTACAGAATCAGACTCGCAAGGAGAATCCCGACGCTCACCCAAATTG
ACGCCACCGCCGTACCCAGGGAGTGA
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