mRNA_M-pyrifera_M_contig116390.3401.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116390.3401.1
Unique NamemRNA_M-pyrifera_M_contig116390.3401.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116390.3401.1 vs. uniprot
Match: A0A814VMF6_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A814VMF6_ADIRI)

HSP 1 Score: 63.5 bits (153), Expect = 2.980e-10
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   10 NSHSSKTHT-GFRYFDEFLQLRCSVQMIDSGMFPNAKEVAESFAAFNAIRRHLIGSKTS 183
            +SH+  + T    Y DEFL+LRC+  +I  G+FPNAKEV ESFA ++AIRRH++ + +S
Sbjct:    6 SSHNESSATYHLDYLDEFLRLRCAPDLISMGIFPNAKEVTESFAIWSAIRRHILPNLSS 64
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BLAST of mRNA_M-pyrifera_M_contig116390.3401.1 vs. uniprot
Match: A0A821IIZ6_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821IIZ6_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 9.560e-10
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   46 YFDEFLQLRCSVQMIDSGMFPNAKEVAESFAAFNAIRRHLI 168
            Y DEFLQLRC+  +I  G+FPNAKE+ E+FA ++A+RR++ 
Sbjct:   20 YLDEFLQLRCASDLISMGLFPNAKEITETFAIWSALRRYIF 60
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BLAST of mRNA_M-pyrifera_M_contig116390.3401.1 vs. uniprot
Match: A0A7S3ZHJ7_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZHJ7_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 1.750e-9
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 PGGNSHSSKTHTGFRYFDEFLQLRCSVQMIDSGMFPNAKEVAESFAAFNAIRRHL 165
            P  N   +    G  Y +EFLQ RC+ +++  G++PNAKE+ ESF+ FN +RRHL
Sbjct:    9 PNTNPKKNPHVRGLGYINEFLQCRCAPELLGLGLYPNAKEITESFSMFNTVRRHL 63
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BLAST of mRNA_M-pyrifera_M_contig116390.3401.1 vs. uniprot
Match: A0A7S4E0U5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E0U5_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 2.410e-9
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 PGGNSHSSKTHTGFRYFDEFLQLRCSVQMIDSGMFPNAKEVAESFAAFNAIRRHL 165
            P  N   +    G  Y +EFLQ RC+ +++  G++PNAKE+ ESF+ FN +RRHL
Sbjct:    9 PNTNPKKNPHVRGLGYINEFLQCRCAPELLGLGLYPNAKEITESFSMFNTVRRHL 63
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BLAST of mRNA_M-pyrifera_M_contig116390.3401.1 vs. uniprot
Match: A0A815SYG6_9BILA (Hypothetical protein n=4 Tax=Adineta steineri TaxID=433720 RepID=A0A815SYG6_9BILA)

HSP 1 Score: 60.1 bits (144), Expect = 4.980e-9
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   10 NSHSSKT--HTGFRYFDEFLQLRCSVQMIDSGMFPNAKEVAESFAAFNAIRRHLI 168
            +SH+ K+  H    Y D+FLQL C+  +I  G+FPNAKE+ ESFA + A+RR+++
Sbjct:    6 HSHNEKSSNHYPLEYLDQFLQLICAPDLITMGLFPNAKEITESFAVWTALRRYIL 60
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BLAST of mRNA_M-pyrifera_M_contig116390.3401.1 vs. uniprot
Match: A0A090M282_OSTTA (Uncharacterized protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M282_OSTTA)

HSP 1 Score: 59.7 bits (143), Expect = 6.520e-9
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   43 RYFDEFLQLRCSVQMIDSGMFPNAKEVAESFAAFNAIRRHLIG 171
            RYF EF+QL C+V +++  +FP+AKE++ESF AFNA R HL G
Sbjct:  169 RYFTEFIQLSCAVDLLECKLFPDAKELSESFGAFNAWRTHLSG 211
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BLAST of mRNA_M-pyrifera_M_contig116390.3401.1 vs. uniprot
Match: A0A817WA15_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A817WA15_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 6.760e-9
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   46 YFDEFLQLRCSVQMIDSGMFPNAKEVAESFAAFNAIRRHLI 168
            Y DEFLQLRC+  +I  G+FPN+KE+ E+FA ++A+RRH+ 
Sbjct:   20 YLDEFLQLRCAPDLITMGLFPNSKEITETFAVWSALRRHIF 60
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BLAST of mRNA_M-pyrifera_M_contig116390.3401.1 vs. uniprot
Match: A0A1Y5I6Q2_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5I6Q2_OSTTA)

HSP 1 Score: 59.7 bits (143), Expect = 6.790e-9
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   43 RYFDEFLQLRCSVQMIDSGMFPNAKEVAESFAAFNAIRRHLIG 171
            RYF EF+QL C+V +++  +FP+AKE++ESF AFNA R HL G
Sbjct:  169 RYFTEFIQLSCAVDLLECKLFPDAKELSESFGAFNAWRTHLSG 211
[Close]
BLAST of mRNA_M-pyrifera_M_contig116390.3401.1 vs. uniprot
Match: A0A813MZU1_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A813MZU1_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 6.810e-9
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   46 YFDEFLQLRCSVQMIDSGMFPNAKEVAESFAAFNAIRRHLI 168
            Y DEFLQLRC+  +I  G+FPN+KE+ E+FA ++A+RRH+ 
Sbjct:   20 YLDEFLQLRCAPDLITMGLFPNSKEITETFAVWSALRRHIF 60
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BLAST of mRNA_M-pyrifera_M_contig116390.3401.1 vs. uniprot
Match: A4RR29_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4RR29_OSTLU)

HSP 1 Score: 57.8 bits (138), Expect = 3.130e-8
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   43 RYFDEFLQLRCSVQMIDSGMFPNAKEVAESFAAFNAIRRHL 165
            RY  EFLQL C+ ++++S +FP+AKE+ ESF+AFNA R HL
Sbjct:  166 RYMTEFLQLHCATELVESRVFPDAKELTESFSAFNAWRTHL 206
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116390.3401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A814VMF6_ADIRI2.980e-1050.85Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A821IIZ6_9BILA9.560e-1056.10Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A7S3ZHJ7_9EUKA1.750e-945.45Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S4E0U5_9EUKA2.410e-945.45Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A815SYG6_9BILA4.980e-947.27Hypothetical protein n=4 Tax=Adineta steineri TaxI... [more]
A0A090M282_OSTTA6.520e-958.14Uncharacterized protein n=1 Tax=Ostreococcus tauri... [more]
A0A817WA15_9BILA6.760e-956.10Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A1Y5I6Q2_OSTTA6.790e-958.14Uncharacterized protein n=2 Tax=Ostreococcus tauri... [more]
A0A813MZU1_9BILA6.810e-956.10Hypothetical protein n=3 Tax=Rotaria sp. Silwood1 ... [more]
A4RR29_OSTLU3.130e-858.54Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116390contigM-pyrifera_M_contig116390:78..263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.0964468-CDS-M-pyrifera_M_contig116390:77..2631622815681.0964468-CDS-M-pyrifera_M_contig116390:77..263Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116390 78..263 -
1692277519.0790293-CDS-M-pyrifera_M_contig116390:77..2631692277519.0790293-CDS-M-pyrifera_M_contig116390:77..263Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116390 78..263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116390.3401.1prot_M-pyrifera_M_contig116390.3401.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116390 78..263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116390.3401.1

>prot_M-pyrifera_M_contig116390.3401.1 ID=prot_M-pyrifera_M_contig116390.3401.1|Name=mRNA_M-pyrifera_M_contig116390.3401.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
PGGNSHSSKTHTGFRYFDEFLQLRCSVQMIDSGMFPNAKEVAESFAAFNA
IRRHLIGSKTSR
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mRNA from alignment at M-pyrifera_M_contig116390:78..263-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116390.3401.1 ID=mRNA_M-pyrifera_M_contig116390.3401.1|Name=mRNA_M-pyrifera_M_contig116390.3401.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig116390:78..263- (Macrocystis pyrifera P11B4 male)
CCAGGCGGCAACTCTCACTCCTCCAAGACCCACACAGGATTCCGCTACTT
TGACGAGTTCCTTCAGCTGCGCTGCTCAGTTCAAATGATTGACAGTGGAA
TGTTCCCCAATGCCAAGGAAGTAGCTGAGAGTTTCGCAGCTTTCAACGCC
ATCAGAAGGCATTTGATTGGGAGCAAGACCTCGCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116390:78..263-

>mRNA_M-pyrifera_M_contig116390.3401.1 ID=mRNA_M-pyrifera_M_contig116390.3401.1|Name=mRNA_M-pyrifera_M_contig116390.3401.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig116390:78..263- (Macrocystis pyrifera P11B4 male)
CCAGGCGGCAACTCTCACTCCTCCAAGACCCACACAGGATTCCGCTACTT
TGACGAGTTCCTTCAGCTGCGCTGCTCAGTTCAAATGATTGACAGTGGAA
TGTTCCCCAATGCCAAGGAAGTAGCTGAGAGTTTCGCAGCTTTCAACGCC
ATCAGAAGGCATTTGATTGGGAGCAAGACCTCGCGACCAGGCGGCAACTC
TCACTCCTCCAAGACCCACACAGGATTCCGCTACTTTGACGAGTTCCTTC
AGCTGCGCTGCTCAGTTCAAATGATTGACAGTGGAATGTTCCCCAATGCC
AAGGAAGTAGCTGAGAGTTTCGCAGCTTTCAACGCCATCAGAAGGCATTT
GATTGGGAGCAAGACCTCGCGA
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