mRNA_M-pyrifera_M_contig116366.3394.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116366.3394.1
Unique NamemRNA_M-pyrifera_M_contig116366.3394.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116366.3394.1 vs. uniprot
Match: A0A2X0KGY5_9BASI (60S ribosomal protein L29 n=1 Tax=Microbotryum saponariae TaxID=289078 RepID=A0A2X0KGY5_9BASI)

HSP 1 Score: 55.5 bits (132), Expect = 3.880e-9
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 MAKSKNHTAHNQTYKSHRNGVKKTKQNKYRPLRGV 105
            MAKSKNHTAHNQT K+HRNG+KK K NKY  L+GV
Sbjct:    1 MAKSKNHTAHNQTRKAHRNGIKKPKTNKYPSLKGV 35
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BLAST of mRNA_M-pyrifera_M_contig116366.3394.1 vs. uniprot
Match: A0A2X0LXG7_9BASI (60S ribosomal protein L29 n=1 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0LXG7_9BASI)

HSP 1 Score: 55.5 bits (132), Expect = 5.550e-9
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 MAKSKNHTAHNQTYKSHRNGVKKTKQNKYRPLRGV 105
            MAKSKNHTAHNQT K+HRNG+KK K NKY  L+GV
Sbjct:    1 MAKSKNHTAHNQTRKAHRNGIKKPKTNKYPSLKGV 35
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BLAST of mRNA_M-pyrifera_M_contig116366.3394.1 vs. uniprot
Match: U5H1G8_USTV1 (60S ribosomal protein L29 n=1 Tax=Microbotryum lychnidis-dioicae (strain p1A1 Lamole / MvSl-1064) TaxID=683840 RepID=U5H1G8_USTV1)

HSP 1 Score: 55.5 bits (132), Expect = 6.400e-9
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 MAKSKNHTAHNQTYKSHRNGVKKTKQNKYRPLRGV 105
            MAKSKNHTAHNQT K+HRNG+KK K NKY  L+GV
Sbjct:    1 MAKSKNHTAHNQTRKAHRNGIKKPKTNKYPSLKGV 35
[Close]
BLAST of mRNA_M-pyrifera_M_contig116366.3394.1 vs. uniprot
Match: A0A1Y2BZ30_9BASI (60S ribosomal protein L29 n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2BZ30_9BASI)

HSP 1 Score: 55.5 bits (132), Expect = 1.010e-8
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 MAKSKNHTAHNQTYKSHRNGVKKTKQNKYRPLRGV 105
            MAKSKNHTAHNQT K+HRNG+KK K NKY  L+GV
Sbjct:   42 MAKSKNHTAHNQTRKAHRNGIKKPKTNKYPSLKGV 76
[Close]
BLAST of mRNA_M-pyrifera_M_contig116366.3394.1 vs. uniprot
Match: T2MFM8_HYDVU (60S ribosomal protein L29 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2MFM8_HYDVU)

HSP 1 Score: 53.5 bits (127), Expect = 1.870e-8
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 MAKSKNHTAHNQTYKSHRNGVKKTKQNKYRPLRGV 105
            MAKSKNHTAHNQT K+HRNG+KK  +NKY  L+GV
Sbjct:    1 MAKSKNHTAHNQTRKAHRNGIKKPLRNKYPSLKGV 35
[Close]
BLAST of mRNA_M-pyrifera_M_contig116366.3394.1 vs. uniprot
Match: A0A4R0S2C5_9APHY (60S ribosomal protein L29 n=1 Tax=Steccherinum ochraceum TaxID=92696 RepID=A0A4R0S2C5_9APHY)

HSP 1 Score: 53.5 bits (127), Expect = 2.090e-8
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 MAKSKNHTAHNQTYKSHRNGVKKTKQNKYRPLRGV 105
            MAKSKNHTAHNQTYK+HRNG+ K K N+ R ++G+
Sbjct:    1 MAKSKNHTAHNQTYKAHRNGITKPKTNRSRSMKGI 35
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BLAST of mRNA_M-pyrifera_M_contig116366.3394.1 vs. uniprot
Match: A0A5B8MJV1_9CHLO (60S ribosomal protein L29 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MJV1_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 2.530e-8
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 MAKSKNHTAHNQTYKSHRNGVKKTKQNKYRPLRGV 105
            MAKSKNHTAHNQ+YK+HRNG+KK K+ KY   +G+
Sbjct:    1 MAKSKNHTAHNQSYKNHRNGIKKQKKQKYSSTKGM 35
[Close]
BLAST of mRNA_M-pyrifera_M_contig116366.3394.1 vs. uniprot
Match: A0A1E3QL37_9ASCO (60S ribosomal protein L29 (Fragment) n=1 Tax=Babjeviella inositovora NRRL Y-12698 TaxID=984486 RepID=A0A1E3QL37_9ASCO)

HSP 1 Score: 53.1 bits (126), Expect = 2.970e-8
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 MAKSKNHTAHNQTYKSHRNGVKKTKQNKYRPLRGV 105
            M+KSKNHTAHNQT K+HRNG+KK K N+Y  L+GV
Sbjct:    1 MSKSKNHTAHNQTKKAHRNGIKKPKTNRYPSLKGV 35
[Close]
BLAST of mRNA_M-pyrifera_M_contig116366.3394.1 vs. uniprot
Match: UPI001C8204A5 (60S ribosomal protein L29 n=1 Tax=Scheffersomyces spartinae TaxID=45513 RepID=UPI001C8204A5)

HSP 1 Score: 53.1 bits (126), Expect = 3.190e-8
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 MAKSKNHTAHNQTYKSHRNGVKKTKQNKYRPLRGV 105
            M+KSKNHTAHNQT K+HRNG+KK + NKY  L+GV
Sbjct:    4 MSKSKNHTAHNQTKKAHRNGIKKPRTNKYPSLKGV 38
[Close]
BLAST of mRNA_M-pyrifera_M_contig116366.3394.1 vs. uniprot
Match: RL29_YEAST (60S ribosomal protein L29 n=14 Tax=Opisthokonta TaxID=33154 RepID=RL29_YEAST)

HSP 1 Score: 52.4 bits (124), Expect = 5.730e-8
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 MAKSKNHTAHNQTYKSHRNGVKKTKQNKYRPLRGV 105
            MAKSKNHTAHNQT K+HRNG+KK K  KY  L+GV
Sbjct:    1 MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGV 35
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116366.3394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2X0KGY5_9BASI3.880e-977.1460S ribosomal protein L29 n=1 Tax=Microbotryum sap... [more]
A0A2X0LXG7_9BASI5.550e-977.1460S ribosomal protein L29 n=1 Tax=Microbotryum sil... [more]
U5H1G8_USTV16.400e-977.1460S ribosomal protein L29 n=1 Tax=Microbotryum lyc... [more]
A0A1Y2BZ30_9BASI1.010e-877.1460S ribosomal protein L29 n=1 Tax=Leucosporidium c... [more]
T2MFM8_HYDVU1.870e-874.2960S ribosomal protein L29 n=1 Tax=Hydra vulgaris T... [more]
A0A4R0S2C5_9APHY2.090e-868.5760S ribosomal protein L29 n=1 Tax=Steccherinum och... [more]
A0A5B8MJV1_9CHLO2.530e-868.5760S ribosomal protein L29 n=1 Tax=Chloropicon prim... [more]
A0A1E3QL37_9ASCO2.970e-871.4360S ribosomal protein L29 (Fragment) n=1 Tax=Babje... [more]
UPI001C8204A53.190e-871.4360S ribosomal protein L29 n=1 Tax=Scheffersomyces ... [more]
RL29_YEAST5.730e-874.2960S ribosomal protein L29 n=14 Tax=Opisthokonta Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116366contigM-pyrifera_M_contig116366:111..245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815680.7617218-CDS-M-pyrifera_M_contig116366:110..2451622815680.7617218-CDS-M-pyrifera_M_contig116366:110..245Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116366 111..245 -
1692277518.9740229-CDS-M-pyrifera_M_contig116366:110..2451692277518.9740229-CDS-M-pyrifera_M_contig116366:110..245Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116366 111..245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116366.3394.1prot_M-pyrifera_M_contig116366.3394.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116366 111..245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116366.3394.1

>prot_M-pyrifera_M_contig116366.3394.1 ID=prot_M-pyrifera_M_contig116366.3394.1|Name=mRNA_M-pyrifera_M_contig116366.3394.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=45bp
MAKSKNHTAHNQTYKSHRNGVKKTKQNKYRPLRGVRIRVACASL*
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mRNA from alignment at M-pyrifera_M_contig116366:111..245-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116366.3394.1 ID=mRNA_M-pyrifera_M_contig116366.3394.1|Name=mRNA_M-pyrifera_M_contig116366.3394.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=135bp|location=Sequence derived from alignment at M-pyrifera_M_contig116366:111..245- (Macrocystis pyrifera P11B4 male)
ATGGCGAAGTCAAAGAACCACACCGCACACAACCAGACGTACAAGTCGCA
CCGCAACGGCGTCAAGAAGACGAAGCAGAACAAGTACAGGCCTCTTCGTG
GAGTACGTATACGTGTTGCTTGCGCCTCTCTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116366:111..245-

>mRNA_M-pyrifera_M_contig116366.3394.1 ID=mRNA_M-pyrifera_M_contig116366.3394.1|Name=mRNA_M-pyrifera_M_contig116366.3394.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig116366:111..245- (Macrocystis pyrifera P11B4 male)
ATGGCGAAGTCAAAGAACCACACCGCACACAACCAGACGTACAAGTCGCA
CCGCAACGGCGTCAAGAAGACGAAGCAGAACAAGTACAGGCCTCTTCGTG
GAGTACGTATACGTGTTGCTTGCGCCTCTCTCTAGATGGCGAAGTCAAAG
AACCACACCGCACACAACCAGACGTACAAGTCGCACCGCAACGGCGTCAA
GAAGACGAAGCAGAACAAGTACAGGCCTCTTCGTGGAGTACGTATACGTG
TTGCTTGCGCCTCTCTCTAG
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