mRNA_M-pyrifera_M_contig116340.3384.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116340.3384.1
Unique NamemRNA_M-pyrifera_M_contig116340.3384.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116340.3384.1 vs. uniprot
Match: D8LNA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNA0_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 7.210e-33
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 IPYMFNSPSLLFDLSGRHATATLPGWGTGMGRRMNLGDRLQNAISPRALSVFLTPAFIAMNKVR 192
            IPYMFNSPSLLFDLSGRH TATLP WGTGM RRM+LGDRLQNAISPRALSVFLTPAFIAMNK R
Sbjct:   15 IPYMFNSPSLLFDLSGRHVTATLPAWGTGMARRMSLGDRLQNAISPRALSVFLTPAFIAMNKAR 78
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BLAST of mRNA_M-pyrifera_M_contig116340.3384.1 vs. uniprot
Match: A0A6H5KGL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL2_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.520e-31
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 IPYMFNSPSLLFDLSGRHATATLPGWGTGMGRRMNLGDRLQNAISPRALSVFLTPAFIAMNKVR 192
            IPYMFNSPSLLFDLSGRH TATLP WGTGM RRM+LGDRLQNAISPRALSVFLTPAFIAMNK R
Sbjct:  357 IPYMFNSPSLLFDLSGRHVTATLPAWGTGMARRMSLGDRLQNAISPRALSVFLTPAFIAMNKAR 420
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BLAST of mRNA_M-pyrifera_M_contig116340.3384.1 vs. uniprot
Match: A0A421GHT4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GHT4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.910e-13
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 IPYMFNSPSLLFDLSGRHATATLPGWGTGMGRRMNLGDRLQNAISPRALSVFLTPAFIAMNKVR 192
            +PY+ NSPSLLFDL G  A + +P WGTG  + M+L +R  N + PR LSV LTP F+ +NK+R
Sbjct:   65 VPYILNSPSLLFDLGG--APSYVPAWGTGFSKNMSLWNRCMNILFPRLLSVALTPPFMELNKMR 126
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BLAST of mRNA_M-pyrifera_M_contig116340.3384.1 vs. uniprot
Match: D0N6P0_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N6P0_PHYIT)

HSP 1 Score: 70.9 bits (172), Expect = 6.380e-13
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 IPYMFNSPSLLFDLSGRHATATLPGWGTGMGRRMNLGDRLQNAISPRALSVFLTPAFIAMNKVR 192
            IPY+ NSPSLLFDL G  A + +P WGTG    M+L +R  N + PR LSV LTP F+ +NK+R
Sbjct:  221 IPYILNSPSLLFDLGG--APSYVPAWGTGFSENMSLWNRCMNILFPRLLSVALTPPFMELNKMR 282
[Close]
BLAST of mRNA_M-pyrifera_M_contig116340.3384.1 vs. uniprot
Match: D0NPG9_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NPG9_PHYIT)

HSP 1 Score: 70.9 bits (172), Expect = 8.530e-13
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 IPYMFNSPSLLFDLSGRHATATLPGWGTGMGRRMNLGDRLQNAISPRALSVFLTPAFIAMNKVR 192
            IPY+ NSPSLLFDL G  A + +P WGTG    M+L +R  N + PR LSV LTP F+ +NK+R
Sbjct:  111 IPYILNSPSLLFDLGG--APSYVPAWGTGFSENMSLWNRCMNILFPRLLSVALTPPFMELNKMR 172
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BLAST of mRNA_M-pyrifera_M_contig116340.3384.1 vs. uniprot
Match: A0A833VYQ2_PHYIN (Glucuronosyltransferase domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A833VYQ2_PHYIN)

HSP 1 Score: 70.9 bits (172), Expect = 8.630e-13
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 IPYMFNSPSLLFDLSGRHATATLPGWGTGMGRRMNLGDRLQNAISPRALSVFLTPAFIAMNKVR 192
            IPY+ NSPSLLFDL G  A + +P WGTG    M+L +R  N + PR LSV LTP F+ +NK+R
Sbjct:  221 IPYILNSPSLLFDLGG--APSYVPAWGTGFSENMSLWNRCMNILFPRLLSVALTPPFMELNKMR 282
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BLAST of mRNA_M-pyrifera_M_contig116340.3384.1 vs. uniprot
Match: H3GSA9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GSA9_PHYRM)

HSP 1 Score: 70.5 bits (171), Expect = 1.170e-12
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 IPYMFNSPSLLFDLSGRHATATLPGWGTGMGRRMNLGDRLQNAISPRALSVFLTPAFIAMNKVR 192
            +PY+ NSPSLLFDL G  A + +P WGTG    M+L +R  N + PR LSV LTP F+ +NK+R
Sbjct:  221 VPYILNSPSLLFDLGG--APSYVPAWGTGFSENMSLWNRCMNILFPRLLSVALTPPFMELNKMR 282
[Close]
BLAST of mRNA_M-pyrifera_M_contig116340.3384.1 vs. uniprot
Match: A0A225VZH5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VZH5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.580e-12
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 IPYMFNSPSLLFDLSGRHATATLPGWGTGMGRRMNLGDRLQNAISPRALSVFLTPAFIAMNKVR 192
            IPY+ NSPSLLFDL G  A + +P WGTG    M+L +R  N + PR LSV LTP F+ +NK+R
Sbjct:  111 IPYILNSPSLLFDLGG--APSYVPAWGTGFRENMSLWNRCMNILFPRLLSVALTPPFMELNKMR 172
[Close]
BLAST of mRNA_M-pyrifera_M_contig116340.3384.1 vs. uniprot
Match: A0A2P4X570_9STRA (UDP-glucoronosyl and UDP-glucosyl transferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X570_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.610e-12
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 IPYMFNSPSLLFDLSGRHATATLPGWGTGMGRRMNLGDRLQNAISPRALSVFLTPAFIAMNKVR 192
            IPY+ NSPSLLFDL G  A + +P WGTG    M+L +R  N + PR LSV LTP F+ +NK+R
Sbjct:  221 IPYILNSPSLLFDLGG--APSYVPAWGTGFRENMSLWNRCMNILFPRLLSVALTPPFMELNKMR 282
[Close]
BLAST of mRNA_M-pyrifera_M_contig116340.3384.1 vs. uniprot
Match: A0A0P1AD22_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AD22_PLAHL)

HSP 1 Score: 69.7 bits (169), Expect = 2.190e-12
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 IPYMFNSPSLLFDLSGRHATATLPGWGTGMGRRMNLGDRLQNAISPRALSVFLTPAFIAMNKVR 192
            IPY+ NSPSLLFDL G  A + +P WGTG    M+L +R  N + PR LSV LTP F+ +NK+R
Sbjct:  111 IPYILNSPSLLFDLGG--APSYVPAWGTGFHESMSLWNRCMNILFPRLLSVALTPPFMELNKMR 172
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116340.3384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNA0_ECTSI7.210e-3392.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGL2_9PHAE6.520e-3192.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A421GHT4_9STRA5.910e-1353.13Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
D0N6P0_PHYIT6.380e-1354.69Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
D0NPG9_PHYIT8.530e-1354.69Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A833VYQ2_PHYIN8.630e-1354.69Glucuronosyltransferase domain-containing protein ... [more]
H3GSA9_PHYRM1.170e-1253.13Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A225VZH5_9STRA1.580e-1254.69Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A2P4X570_9STRA1.610e-1254.69UDP-glucoronosyl and UDP-glucosyl transferase n=1 ... [more]
A0A0P1AD22_PLAHL2.190e-1254.69Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116340contigM-pyrifera_M_contig116340:98..289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue6.5e-24
Seed eggNOG ortholog2880.D8LNA0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transferase activity, transferring hexosyl groups
EggNOG OGsKOG1192@1,KOG1192@2759
Ec32 ortholog descriptionGlycosyltransferase family 28
Ec32 orthologEc-04_004610.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size192
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815680.2675247-CDS-M-pyrifera_M_contig116340:97..2801622815680.2675247-CDS-M-pyrifera_M_contig116340:97..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116340 98..280 -
1692277518.7579064-CDS-M-pyrifera_M_contig116340:97..2801692277518.7579064-CDS-M-pyrifera_M_contig116340:97..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116340 98..280 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815680.277906-UTR-M-pyrifera_M_contig116340:280..2891622815680.277906-UTR-M-pyrifera_M_contig116340:280..289Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116340 281..289 -
1692277518.7672033-UTR-M-pyrifera_M_contig116340:280..2891692277518.7672033-UTR-M-pyrifera_M_contig116340:280..289Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116340 281..289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116340.3384.1prot_M-pyrifera_M_contig116340.3384.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116340 98..280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116340.3384.1

>prot_M-pyrifera_M_contig116340.3384.1 ID=prot_M-pyrifera_M_contig116340.3384.1|Name=mRNA_M-pyrifera_M_contig116340.3384.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MFNSPSLLFDLSGRHATATLPGWGTGMGRRMNLGDRLQNAISPRALSVFL
TPAFIAMNKVR
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mRNA from alignment at M-pyrifera_M_contig116340:98..289-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116340.3384.1 ID=mRNA_M-pyrifera_M_contig116340.3384.1|Name=mRNA_M-pyrifera_M_contig116340.3384.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig116340:98..289- (Macrocystis pyrifera P11B4 male)
ATCCCGTATATGTTCAATTCGCCCAGCCTTCTGTTCGACCTTTCGGGGAG
GCACGCCACCGCCACCCTACCCGGGTGGGGCACGGGGATGGGGCGACGCA
TGAACCTGGGAGACCGGCTGCAGAACGCCATATCGCCGAGGGCGCTGTCC
GTTTTCTTAACCCCCGCGTTCATCGCCATGAACAAGGTGCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116340:98..289-

>mRNA_M-pyrifera_M_contig116340.3384.1 ID=mRNA_M-pyrifera_M_contig116340.3384.1|Name=mRNA_M-pyrifera_M_contig116340.3384.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig116340:98..289- (Macrocystis pyrifera P11B4 male)
ATGTTCAATTCGCCCAGCCTTCTGTTCGACCTTTCGGGGAGGCACGCCAC
CGCCACCCTACCCGGGTGGGGCACGGGGATGGGGCGACGCATGAACCTGG
GAGACCGGCTGCAGAACGCCATATCGCCGAGGGCGCTGTCCGTTTTCTTA
ACCCCCGCGTTCATCGCCATGAACAAGGTGCGAATGTTCAATTCGCCCAG
CCTTCTGTTCGACCTTTCGGGGAGGCACGCCACCGCCACCCTACCCGGGT
GGGGCACGGGGATGGGGCGACGCATGAACCTGGGAGACCGGCTGCAGAAC
GCCATATCGCCGAGGGCGCTGTCCGTTTTCTTAACCCCCGCGTTCATCGC
CATGAACAAGGTGCGA
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