mRNA_M-pyrifera_M_contig11630.3382.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11630.3382.1
Unique NamemRNA_M-pyrifera_M_contig11630.3382.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11630.3382.1 vs. uniprot
Match: D8LCL7_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCL7_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.150e-25
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:   10 SIAGETCSSLSMVLRKPERQLATLDLSCNELQASYMLYDDDIRLLCGALERNTNLTSVDLRMNDVSADLEDLEAIE 237
            SIA E CSSLSMVLRKP + LATLDLSCNELQ      DDDIRLLC ALERN++LTS+DLRMNDVSADLEDLE IE
Sbjct:  430 SIAREACSSLSMVLRKPGKVLATLDLSCNELQ------DDDIRLLCVALERNSSLTSIDLRMNDVSADLEDLEKIE 499
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11630.3382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCL7_ECTSI2.150e-2578.95Flagellar associated protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11630contigM-pyrifera_M_contig11630:238..2381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.3e-21
Seed eggNOG ortholog2880.D8LCL7
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815680.1267936-CDS-M-pyrifera_M_contig11630:237..3601622815680.1267936-CDS-M-pyrifera_M_contig11630:237..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11630 238..360 +
1692277518.6621125-CDS-M-pyrifera_M_contig11630:237..3601692277518.6621125-CDS-M-pyrifera_M_contig11630:237..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11630 238..360 +
1622815680.1401746-CDS-M-pyrifera_M_contig11630:2267..23811622815680.1401746-CDS-M-pyrifera_M_contig11630:2267..2381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11630 2268..2381 +
1692277518.676668-CDS-M-pyrifera_M_contig11630:2267..23811692277518.676668-CDS-M-pyrifera_M_contig11630:2267..2381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11630 2268..2381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11630.3382.1prot_M-pyrifera_M_contig11630.3382.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11630 238..2381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11630.3382.1

>prot_M-pyrifera_M_contig11630.3382.1 ID=prot_M-pyrifera_M_contig11630.3382.1|Name=mRNA_M-pyrifera_M_contig11630.3382.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
SANSIAGETCSSLSMVLRKPERQLATLDLSCNELQASYMLYDDDIRLLCG
ALERNTNLTSVDLRMNDVSADLEDLEAIE
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mRNA from alignment at M-pyrifera_M_contig11630:238..2381+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11630.3382.1 ID=mRNA_M-pyrifera_M_contig11630.3382.1|Name=mRNA_M-pyrifera_M_contig11630.3382.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2144bp|location=Sequence derived from alignment at M-pyrifera_M_contig11630:238..2381+ (Macrocystis pyrifera P11B4 male)
AGCGCGAATTCCATAGCCGGAGAGACGTGCTCGTCGCTGAGCATGGTGCT
GAGGAAGCCGGAGAGACAGCTTGCCACGCTGGATCTCAGCTGCAACGAGT
TGCAGGCGAGTTATATGTTATATGTTATGTCTATGTGTGCCTCTTGTGGC
AGCAGCGATGGCACCGGCAGTAGCAGTAGCAGTAGTAGTAGCAGTAGCAG
TAGTAGTAGCAGTAGCAGTAGTAGTGATAGTAGTAGTAGTAGTAGGATAA
AGAGTAGAAGCAGGAGCAGGAGCAGTAGCAGGAGCAGGAGCAGTAGCAAT
AGTAGCAGGAGCAGGAGCAGTAGCAGTAGCGGTAGCAGTAGCAGCAGCAG
TAGCAGTAGCAGTAGCAGTAGCAGCAGCAGTAGCAGCGGCAGCAGCAGTA
GCAGTAGCAGCAGCAGCAGTAGCAGTAGCAGCAGCAGTAGCAGTAGCAGT
AGCAGTAGCAGCAGCAGCAGCAGTAGCAGTAGCAGTAGCAGTAGCAGTAG
CGGTAGCAGTAGCGGTAGCAGTAGCAGTAGCAATAGAGCAGCAGTAGCAG
CGGTAGCAGCAGCGATACAAGCATAACCAGTAGCAGTAGCAACAGCAAAG
GCGGCAACAATAAAAGCAGTAGCAGTAGCAGCAGCAGCAGCAGCTTTACC
AAACCATCGTCCATCCGTCCGTCCGTCCGTTGGATGATTCATCCGTGATG
GCGCCACTCCTGCTTAGCCTTTTGTGACTTTCAGAGAGCAAGATTTGGCG
ACAACAATTGGCGGTTACAGCAAACCATTGTGGCCACTGCGTGAGTAGGA
GATGATACAATGGTTGATGCCCAAGGAGTCGTACGGCACGGACGCAACAC
GGTCCTACCCTTACCCTTACACACGCCTGGACGCTCACGCCGCTCGTAGA
TGGTTGATAGCACCAAGATGCACCAACCACTGCATCGGTCGCTACCTTTC
GGCGTCCAAAAGATTTCTGTTTTTTACGGGGGACCACAGCAGTAAATAGG
ACCTATGGTACACACAAAAACCTATACATTTACCTATTTTTACTGAAAAT
ATTTGGTCCTATTTACTATGGCCCCCCGTAATAGTCAGCGTAACCCTTTC
AGGGCCAAGTGCAGTTTCGTTTCGGGTGACAAGCTACTTAAAATTAGAGT
GGTCCCCCACCCCCGAAACGGGACTGCATCGCCTAAAAAGTATCAAGTCG
CCACCCAATTTATAAACTAGCCGTGATGTCCCATTATTACCGGAGGAGCC
TGCAGAGCAGTATTGCGAGGGACCATAGTAAATACCCTGGTAGGACTTAG
GGTGCACACAAAAACCTACCAGTACACATTTCCCTATTTATACCAACAAT
ATTTGGTCCTATTTATTATGGTCCCCCGAAGTAGAGCAGTAGTGTTCGTA
ACCCGAATGTAGCGTGTAAACATAGGGCATTCCTGATTTTTGGGTCTATC
CTGATTACGGTACTGCCCCCCCCCCCTCCAAGACTACGGCCATGCATGAT
ACTGAGTACTCCCCCCCCCCCCGTCGAAGCACGAGTCGTGAAGTACAACC
AACTCACAGCCTTTCTTACTCCGTTTGCCATCTCACAATTTGTTTGTGTT
GGACGTTCATTTTTGTTTGTTTGCCTGTTTTTGTTTTCGTCTTCTTCTTC
CCGTTTATTCTCTTGGCCCTTCTCGTCTCTCTCCCTCCTATCGATGCTCA
TAACTCAGAACCCGGGGTCTCGTATGTAGCCGGTTCTCTTCTCCCTTACC
CGCTCCGGTTCACGCCTCCTTTTTTTATCGCGAGAAGACTTCTGCCCTGT
CTTCCCTCGTCGACTCGCGTCTTATTGTGCAACGCTTATTCCGATCATAC
CATCCACATATATAGATAAAAGGGAAACTAGAATCAAATGAGAGGTGTTA
TCAGTCAGACCTAACTGCCTGACATTTTCCCCCCTCCAAAAAAATGCATT
CTCCCTTGTGAATGACTCTGTTGACTCCTTCCTACCCAACCATCTCTGCG
TATCTTACCCCCCCCCGCCGCTTTTTGCAGGACGACGACATCCGGCTGCT
TTGCGGGGCGCTCGAAAGAAACACCAACCTCACTTCCGTCGATCTCCGCA
TGAACGACGTCTCCGCCGACCTTGAGGACCTGGAAGCGATAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11630:238..2381+

>mRNA_M-pyrifera_M_contig11630.3382.1 ID=mRNA_M-pyrifera_M_contig11630.3382.1|Name=mRNA_M-pyrifera_M_contig11630.3382.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig11630:238..2381+ (Macrocystis pyrifera P11B4 male)
AGCGCGAATTCCATAGCCGGAGAGACGTGCTCGTCGCTGAGCATGGTGCT
GAGGAAGCCGGAGAGACAGCTTGCCACGCTGGATCTCAGCTGCAACGAGT
TGCAGGCGAGTTATATGTTATATAGCGCGAATTCCATAGCCGGAGAGACG
TGCTCGTCGCTGAGCATGGTGCTGAGGAAGCCGGAGAGACAGCTTGCCAC
GCTGGATCTCAGCTGCAACGAGTTGCAGGCGAGTTATATGTTATATGACG
ACGACATCCGGCTGCTTTGCGGGGCGCTCGAAAGAAACACCAACCTCACT
TCCGTCGATCTCCGCATGAACGACGTCTCCGCCGACCTTGAGGACCTGGA
AGCGATAGAGGACGACGACATCCGGCTGCTTTGCGGGGCGCTCGAAAGAA
ACACCAACCTCACTTCCGTCGATCTCCGCATGAACGACGTCTCCGCCGAC
CTTGAGGACCTGGAAGCGATAGAG
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