mRNA_M-pyrifera_M_contig116262.3377.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116262.3377.1
Unique NamemRNA_M-pyrifera_M_contig116262.3377.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116262.3377.1 vs. uniprot
Match: UPI001E5D6546 (hypothetical protein n=1 Tax=Roseiconus lacunae TaxID=2605694 RepID=UPI001E5D6546)

HSP 1 Score: 86.3 bits (212), Expect = 9.750e-17
Identity = 59/163 (36.20%), Postives = 84/163 (51.53%), Query Frame = 1
Query:    1 WSKETDVSSIQEKTVT---DHYLWLASNKYKTDPH-NKRLGFFRRFITWLWDQKLLEELPRNLRRKSHRKKRVHKEVKRFD--GVSEVIESLPPKFRVWALLGLNCGMTSADLGTLFWHDDKLTIGDEIKAGGEIVEVRAKTGDSESTPTVTYRLWDETVQLL 471
            + K T V++I  +T+     H L L S       + N RL   R  I WLW+Q  +E+LP+N+  +  R  R     + F    V ++I +   + R+W LLGLNCGMT  D+  L   + ++         G+I   R+KT   ES PTVTY+LW ET QLL
Sbjct:  245 YGKSTAVATIDGRTLARLHSHLLELVSKDACAPGYANDRLREVRSLIRWLWEQDAVEKLPKNIDSRGLRIARKASTPQTFTVGEVEKLIRTSSGRARLWILLGLNCGMTQRDISDL--QNSQVNW-----LNGQITRKRSKTQKHESVPTVTYKLWPETHQLL 400          
BLAST of mRNA_M-pyrifera_M_contig116262.3377.1 vs. uniprot
Match: A0A5C6DNZ6_9BACT (Tyr recombinase domain-containing protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6DNZ6_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 5.690e-13
Identity = 52/160 (32.50%), Postives = 79/160 (49.38%), Query Frame = 1
Query:   10 ETDVSSIQEKTVTD---HYLWLASNKYKTDPHNKRL-GFFRRFITWLWDQKLLEELPRNLRRKSHR--KKRVHKEVKRFDGVSEVIESLPPKFRVWALLGLNCGMTSADLGTLFWHDDKLTIGDEIKAGGEIVEVRAKTGDSESTPTVTYRLWDETVQLL 471
            ++ V +I  +T+T    H L L S       + + +    R  + WLW+Q  +E LP+N+     R  +K    +    D V  ++++   + R++ LL LNCGMT  D+  L   D    I  + +    I   R+KT   ES PTVTYRLW ET+ LL
Sbjct:  250 QSAVDTICARTLTQFHSHLLQLISKDQCAPAYARDIVTVVRSLVRWLWEQDAIENLPKNIDSTELRICRKSTTPQTFEIDEVMTLLQTTSDRSRLYVLLALNCGMTQKDISDLCSED----INWQART---ITRKRSKTQHHESVPTVTYRLWPETLSLL 402          
BLAST of mRNA_M-pyrifera_M_contig116262.3377.1 vs. uniprot
Match: A0A1U7GHF2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium 71-10 TaxID=1895807 RepID=A0A1U7GHF2_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 2.660e-11
Identity = 50/158 (31.65%), Postives = 82/158 (51.90%), Query Frame = 1
Query:    7 KETDVSSIQEKTVTDHYLWLASNKYKTDPHNKRLGF-FRRFITWLWDQKLLEELPRNLRRKSHRKKRVHKEVKRF--DGVSEVIESLPPKFRVWALLGLNCGMTSADLGTLFWHDDKLTIGDEIKAGGEIVEVRAKTGDSESTPTVTYRLWDETVQLL 471
            +  DV  I E    + YL+++SN+  +D   K++    R F+ W  ++ L++  PRNLR K +  +   K V+    + V E IE    + R+  LL  NCGMT  D+  +  H  ++   +     G I   R+K+   E+ PTV Y+LW +T++LL
Sbjct:   15 ENADVGKITENFWREFYLFVSSNEAWSDGWKKKVMVNARAFVAWAAEEGLIDA-PRNLRSKQYVIEETAKAVETLPPELVREWIERAHGQLRLHLLLMANCGMTQQDIADV--HPSEVDWEE-----GRITRKRSKSKTEENVPTVCYKLWPDTLELL 164          
BLAST of mRNA_M-pyrifera_M_contig116262.3377.1 vs. uniprot
Match: M2B1N5_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula europaea 6C TaxID=1263867 RepID=M2B1N5_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 9.180e-10
Identity = 37/151 (24.50%), Postives = 78/151 (51.66%), Query Frame = 1
Query:   25 SIQEKTVTDHYLWLASNKYKTDPHNKRLGFFRRFITWLWDQKLLEELPRNLRRKSHRKKRVHKEVKRFDG--VSEVIESLPPKFRVWALLGLNCGMTSADLGTLFWHDDKLTIGDEIKAGGEIVEVRAKTGDSESTPTVTYRLWDETVQLL 471
            ++   T+  + + +      +     R+   ++F+ WL+ ++L++E+PR +  +    +  + +++ F+   +  ++++   + +++ LL LN GMT  D+  L   +  L         G I   R+KT D ++ PTVTY+LW ET+ LL
Sbjct:  220 AVSPVTLDQYLVHIKGQPVASKTKADRVAAVKQFVLWLYHRELIDEIPRLITARKFSIEVGNSKIEIFEDSDIEAMLKAAREREQLYILLALNAGMTQVDISDLRREELNLE-------AGTITRKRSKTRDHKTVPTVTYKLWPETLSLL 363          
BLAST of mRNA_M-pyrifera_M_contig116262.3377.1 vs. uniprot
Match: A0A5M6DDC5_9BACT (Phage integrase family protein n=2 Tax=Roseiconus nitratireducens TaxID=2605748 RepID=A0A5M6DDC5_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.990e-6
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  124 FITWLWDQKLLEELPRNLRRKSHRKKRVHKEVKR-----FDG-VSEVIESLPPKFRVWALLGLNCGMTSADLGTLFWHDDKLTIGDEIKAGGEIVEVRAKTGDSESTPTVTYRLWDETVQLL 471
            F  W  + +L++ LPR +   S  K +V     R      DG + +++++   + R++ LL LNCG T  D+  L   +  L         G+I   R+KTGD  + PTVT+RLW ET+ LL
Sbjct:  248 FARWAHEGELIDVLPRIV---SAEKMKVSVSTDRRANPYADGELRKLLKASSGRSRLYLLLALNCGFTQKDISDLKSPEVDLK-------KGQITRKRSKTGDHGNVPTVTWRLWPETLALL 359          
BLAST of mRNA_M-pyrifera_M_contig116262.3377.1 vs. uniprot
Match: UPI0013DB6C1F (hypothetical protein n=1 Tax=Candidatus Laterigemmans baculatus TaxID=2770505 RepID=UPI0013DB6C1F)

HSP 1 Score: 55.5 bits (132), Expect = 5.050e-6
Identity = 43/154 (27.92%), Postives = 74/154 (48.05%), Query Frame = 1
Query:   19 VSSIQEKTVTDHYLWLASNKYKTDPHNKRLGFFRRFITWLWDQKLLEELPRNLRRKSHRKKRVHK-EVKRF--DGVSEVIESLPPKFRVWALLGLNCGMTSADLGTLFWHDDKLTIGDEIKAGGEIVEVRAKTGDSESTPTVTYRLWDETVQLL 471
            V  I E T    YL +      T     RL   R F+ +L++Q+ ++ LPRN+R     K  VH  +++ +  + + +++ + P   + +  L  NCG         F+  D  T+  E+   G I   R+K    +  PTV+++LWD+T QL+
Sbjct:  227 VDQITEATWERWYLRVMEGG-STYTQRDRLSTTRSFLQYLYEQRQID-LPRNIR---SLKATVHTGKIEHYTQEELQDILHNAPGILQCFTYLMANCG---------FYQSDIATLTPEMLREGYITRQRSKKAKGKRIPTVSWKLWDKTAQLV 366          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116262.3377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI001E5D65469.750e-1736.20hypothetical protein n=1 Tax=Roseiconus lacunae Ta... [more]
A0A5C6DNZ6_9BACT5.690e-1332.50Tyr recombinase domain-containing protein n=1 Tax=... [more]
A0A1U7GHF2_9BACT2.660e-1131.65Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
M2B1N5_9BACT9.180e-1024.50Uncharacterized protein n=1 Tax=Rhodopirellula eur... [more]
A0A5M6DDC5_9BACT1.990e-633.61Phage integrase family protein n=2 Tax=Roseiconus ... [more]
UPI0013DB6C1F5.050e-627.92hypothetical protein n=1 Tax=Candidatus Laterigemm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116262contigM-pyrifera_M_contig116262:1..513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.6916401-CDS-M-pyrifera_M_contig116262:0..711622815679.6916401-CDS-M-pyrifera_M_contig116262:0..71Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116262 1..71 -
1692277518.3804579-CDS-M-pyrifera_M_contig116262:0..711692277518.3804579-CDS-M-pyrifera_M_contig116262:0..71Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116262 1..71 -
1622815679.704624-CDS-M-pyrifera_M_contig116262:113..5131622815679.704624-CDS-M-pyrifera_M_contig116262:113..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116262 114..513 -
1692277518.3940225-CDS-M-pyrifera_M_contig116262:113..5131692277518.3940225-CDS-M-pyrifera_M_contig116262:113..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116262 114..513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116262.3377.1prot_M-pyrifera_M_contig116262.3377.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116262 1..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116262.3377.1

>prot_M-pyrifera_M_contig116262.3377.1 ID=prot_M-pyrifera_M_contig116262.3377.1|Name=mRNA_M-pyrifera_M_contig116262.3377.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
WSKETDVSSIQEKTVTDHYLWLASNKYKTDPHNKRLGFFRRFITWLWDQK
LLEELPRNLRRKSHRKKRVHKEVKRFDGVSEVIESLPPKFRVWALLGLNC
GMTSADLGTLFWHDDKLTIGDEIKAGGEIVEVRAKTGDSESTPTVTYRLW
DETVQLL
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mRNA from alignment at M-pyrifera_M_contig116262:1..513-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116262.3377.1 ID=mRNA_M-pyrifera_M_contig116262.3377.1|Name=mRNA_M-pyrifera_M_contig116262.3377.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig116262:1..513- (Macrocystis pyrifera P11B4 male)
TGGTCGAAAGAGACAGATGTCTCATCGATCCAAGAGAAGACGGTCACGGA CCACTATCTTTGGCTGGCAAGTAACAAATACAAGACCGATCCTCATAACA AACGACTCGGATTTTTTCGCCGATTTATAACGTGGCTTTGGGACCAAAAA CTTCTCGAAGAGTTGCCACGCAACCTTCGAAGAAAGAGCCATCGGAAGAA GAGAGTCCATAAGGAAGTGAAGCGTTTCGATGGAGTCTCCGAGGTCATCG AGTCATTACCACCAAAATTTCGTGTCTGGGCATTACTTGGGCTGAATTGC GGTATGACAAGTGCTGACCTCGGAACACTGTTTTGGCACGACGACAAGCT CACAATCGGCGATGAGATTAAAGCCGGAGGGGAAATCGTCGAGGTTCGTG GTCTGATTCGCACCGACAACTGGACGATCCGCCGACGCCGAGCAAAGACC GGTGATAGCGAATCGACGCCCACGGTGACCTACAGGCTTTGGGATGAAAC CGTTCAACTACTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116262:1..513-

>mRNA_M-pyrifera_M_contig116262.3377.1 ID=mRNA_M-pyrifera_M_contig116262.3377.1|Name=mRNA_M-pyrifera_M_contig116262.3377.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig116262:1..513- (Macrocystis pyrifera P11B4 male)
TGGTCGAAAGAGACAGATGTCTCATCGATCCAAGAGAAGACGGTCACGGA
CCACTATCTTTGGCTGGCAAGTAACAAATACAAGACCGATCCTCATAACA
AACGACTCGGATTTTTTCGCCGATTTATAACGTGGCTTTGGGACCAAAAA
CTTCTCGAAGAGTTGCCACGCAACCTTCGAAGAAAGAGCCATCGGAAGAA
GAGAGTCCATAAGGAAGTGAAGCGTTTCGATGGAGTCTCCGAGGTCATCG
AGTCATTACCACCAAAATTTCGTGTCTGGGCATTACTTGGGCTGAATTGC
GGTATGACAAGTGCTGACCTCGGAACACTGTTTTGGCACGACGACAAGCT
CACAATCGGCGATGAGATTAAAGCCGGAGGGGAAATCGTCGAGGTTCGTG
TGGTCGAAAGAGACAGATGTCTCATCGATCCAAGAGAAGACGGTCACGGA
CCACTATCTTTGGCTGGCAAGTAACAAATACAAGACCGATCCTCATAACA
AACGACTCGGATTTTTTCGCCGATTTATAACGTGGCTTTGGGACCAAAAA
CTTCTCGAAGAGTTGCCACGCAACCTTCGAAGAAAGAGCCATCGGAAGAA
GAGAGTCCATAAGGAAGTGAAGCGTTTCGATGGAGTCTCCGAGGTCATCG
AGTCATTACCACCAAAATTTCGTGTCTGGGCATTACTTGGGCTGAATTGC
GGTATGACAAGTGCTGACCTCGGAACACTGTTTTGGCACGACGACAAGCT
CACAATCGGCGATGAGATTAAAGCCGGAGGGGAAATCGTCGAGGTTCGTG
CAAAGACCGGTGATAGCGAATCGACGCCCACGGTGACCTACAGGCTTTGG
GATGAAACCGTTCAACTACTACAAAGACCGGTGATAGCGAATCGACGCCC
ACGGTGACCTACAGGCTTTGGGATGAAACCGTTCAACTACTA
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