mRNA_M-pyrifera_M_contig116253.3374.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116253.3374.1
Unique NamemRNA_M-pyrifera_M_contig116253.3374.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116253.3374.1 vs. uniprot
Match: A0A6I6AI00_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AI00_9PLAN)

HSP 1 Score: 214 bits (545), Expect = 3.530e-67
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 1
Query:    1 QRWERNLKLIPEHLRGGPCYLLGAGYAQLDRHGQAAAWYLWVPLGYAANPQLSADASLKAADSLKAMGQSANALRLYQETVARYPTTAARQMAEQMINQLMQEAGQKN 324
            QRWERNLKLIPEHLRGGPCYLLGAGYAQLDRHGQAAAWYLWVPLGYAANPQLSADASLKAADSLKAMGQSANALRLYQETVARYPTT ARQMAEQMINQLMQEAGQKN
Sbjct:  239 QRWERNLKLIPEHLRGGPCYLLGAGYAQLDRHGQAAAWYLWVPLGYAANPQLSADASLKAADSLKAMGQSANALRLYQETVARYPTTTARQMAEQMINQLMQEAGQKN 346          
BLAST of mRNA_M-pyrifera_M_contig116253.3374.1 vs. uniprot
Match: A0A518AA05_9PLAN (Tetratricopeptide repeat protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AA05_9PLAN)

HSP 1 Score: 191 bits (484), Expect = 5.550e-58
Identity = 94/108 (87.04%), Postives = 100/108 (92.59%), Query Frame = 1
Query:    1 QRWERNLKLIPEHLRGGPCYLLGAGYAQLDRHGQAAAWYLWVPLGYAANPQLSADASLKAADSLKAMGQSANALRLYQETVARYPTTAARQMAEQMINQLMQEAGQKN 324
            QRWERNLKLIPEHLRGGPC+LLGAGYA LDRHG+AAAWYLWVPL Y+ANP LSA+ASLKAADSL+AMGQSANALRLYQET ARYP    RQMAEQMINQL+QEAGQKN
Sbjct:  239 QRWERNLKLIPEHLRGGPCFLLGAGYALLDRHGEAAAWYLWVPLAYSANPLLSAEASLKAADSLRAMGQSANALRLYQETAARYPDIPTRQMAEQMINQLLQEAGQKN 346          
BLAST of mRNA_M-pyrifera_M_contig116253.3374.1 vs. uniprot
Match: A0A517RJD7_9PLAN (Tetratricopeptide repeat protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RJD7_9PLAN)

HSP 1 Score: 149 bits (375), Expect = 1.370e-41
Identity = 72/101 (71.29%), Postives = 88/101 (87.13%), Query Frame = 1
Query:    1 QRWERNLKLIPEHLRGGPCYLLGAGYAQLDRHGQAAAWYLWVPLGYAANPQLSADASLKAADSLKAMGQSANALRLYQETVARYPTTAARQMAEQMINQLM 303
            QRWERNL  +PEHLR GP +LLG GYA L+RHGQAAA +LW+PL Y +NPQLSA A+LKAADSL A+GQ+ANALRLYQETVARYP + ++QMA+QM++QL+
Sbjct:  238 QRWERNLHQVPEHLRAGPYFLLGTGYAMLERHGQAAASFLWIPLAYDSNPQLSALANLKAADSLLALGQTANALRLYQETVARYPKSPSKQMAQQMVDQLL 338          
BLAST of mRNA_M-pyrifera_M_contig116253.3374.1 vs. uniprot
Match: A0A517VU77_9PLAN (Uncharacterized protein n=4 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VU77_9PLAN)

HSP 1 Score: 143 bits (361), Expect = 1.200e-39
Identity = 71/101 (70.30%), Postives = 86/101 (85.15%), Query Frame = 1
Query:    1 QRWERNLKLIPEHLRGGPCYLLGAGYAQLDRHGQAAAWYLWVPLGYAANPQLSADASLKAADSLKAMGQSANALRLYQETVARYPTTAARQMAEQMINQLM 303
            QRWERNL  IPEHL+ G  +LLG GYA L+RHGQAAA +LW+PL Y +NPQLSA A+LKAADSL AMGQ+ANALRLYQETV RYP + ++Q+A+QMI+QL+
Sbjct:  220 QRWERNLNQIPEHLKAGAYFLLGTGYAMLERHGQAAASFLWIPLAYDSNPQLSALANLKAADSLVAMGQTANALRLYQETVVRYPHSTSQQIAQQMIDQLL 320          
BLAST of mRNA_M-pyrifera_M_contig116253.3374.1 vs. uniprot
Match: A0A517VHK5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VHK5_9PLAN)

HSP 1 Score: 142 bits (359), Expect = 3.080e-39
Identity = 72/106 (67.92%), Postives = 86/106 (81.13%), Query Frame = 1
Query:    1 QRWERNLKLIPEHLRGGPCYLLGAGYAQLDRHGQAAAWYLWVPLGYAANPQLSADASLKAADSLKAMGQSANALRLYQETVARYPTTAARQMAEQMINQLMQEAGQ 318
            QRWERNL  +PEHLR GP +LLG GYA L+RHGQAAA +LW+PL   +NPQLSA+ASLKAADS+ AMGQ+ NALRLYQET ARY  + ARQMA QMI+Q+ + + Q
Sbjct:  238 QRWERNLNQVPEHLRAGPHFLLGTGYAMLERHGQAAASFLWIPLAENSNPQLSAEASLKAADSILAMGQTNNALRLYQETAARYSISPARQMALQMIDQITKTSSQ 343          
BLAST of mRNA_M-pyrifera_M_contig116253.3374.1 vs. uniprot
Match: A6CAQ2_9PLAN (Uncharacterized protein n=8 Tax=Planctomycetaceae TaxID=126 RepID=A6CAQ2_9PLAN)

HSP 1 Score: 139 bits (350), Expect = 6.690e-38
Identity = 71/106 (66.98%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 QRWERNLKLIPEHLRGGPCYLLGAGYAQLDRHGQAAAWYLWVPLGYAANPQLSADASLKAADSLKAMGQSANALRLYQETVARYPTTAARQMAEQMINQLMQEAGQ 318
            QRWERNL  +PE LR GP +LLG GYA L+RHGQAAA +LW+PL   +NPQLSA+ASLKAADS+ AMGQ+ NALRLYQET ARY  + ARQMA QMI+Q+ + + Q
Sbjct:  238 QRWERNLNQVPELLRAGPHFLLGTGYAMLERHGQAAASFLWIPLAENSNPQLSAEASLKAADSILAMGQTVNALRLYQETAARYSKSPARQMALQMIDQITKASSQ 343          
BLAST of mRNA_M-pyrifera_M_contig116253.3374.1 vs. uniprot
Match: A0A2E7CXU1_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7CXU1_9PLAN)

HSP 1 Score: 81.6 bits (200), Expect = 4.060e-16
Identity = 45/97 (46.39%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 QRWERNLKLIPEHLRGGPCYLLGAGYAQLDRHGQAAAWYLWVPLGYAANPQLSADASLKAADSLKAMGQSANALRLYQETVARYPTTAARQMAEQMI 291
            QRWE  ++ +PE LRGGP YLLGAG+     H +AAA  LW  L Y  + QL+A A LKAA+++K +GQ   A  L++E   R+  T+  Q A Q I
Sbjct:  235 QRWESRIERMPEELRGGPYYLLGAGHLLRQEHERAAAALLWTALVYDFDHQLAARACLKAAETMKQLGQKDEAKNLFREVAIRFRDTSYAQDASQAI 331          
BLAST of mRNA_M-pyrifera_M_contig116253.3374.1 vs. uniprot
Match: A0A7C3WE13_9BACT (Tetratricopeptide repeat protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C3WE13_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 2.350e-11
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    7 WERNLKLIPEHLRGGPCYLLGAGYAQLDRHGQAAAWYLWVPLGYAANPQLSADASLKAADSLKAMGQSANALRLYQETVARYPTTAARQMAEQMINQL 300
            WE++++ +P  LR GP Y+LG  Y Q  R  +AA  +L V + Y     L+A A   AA +L+ +GQ+  A+RLYQE + ++P T     A+Q + +L
Sbjct:   38 WEQSIQKLPPGLRAGPYYVLGRAYGQQGRWQEAALAWLRVAILYGRPRHLAARAMADAAGALERLGQTDQAVRLYQELLQKWPDTPFAHEAQQRLEEL 135          
BLAST of mRNA_M-pyrifera_M_contig116253.3374.1 vs. uniprot
Match: UPI001487E62A (hypothetical protein n=1 Tax=Alienimonas chondri TaxID=2681879 RepID=UPI001487E62A)

HSP 1 Score: 63.5 bits (153), Expect = 1.590e-9
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   13 RNLKLIPEHLRGGPCYLLGAGYAQLDRHGQAAAWYLWVPLGYAANPQLSADASLKAADSLKAMGQSANALRLYQETVARYPTTAARQMAEQMINQ 297
            R +  +PE LR GP + LG       R+ +A A +LW P+  + +P  +AD  ++AAD L+A G    A+RL++ET+AR+P T A + A + +++
Sbjct:  241 RRIDSLPEPLRTGPLFTLGIASQVAGRNDEATAAFLWAPVADSTDPTRAADGLVRAADLLRA-GDPLAAVRLWRETIARFPFTDAAETARRRLDE 334          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116253.3374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6I6AI00_9PLAN3.530e-6799.07Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518AA05_9PLAN5.550e-5887.04Tetratricopeptide repeat protein n=3 Tax=Gimesia p... [more]
A0A517RJD7_9PLAN1.370e-4171.29Tetratricopeptide repeat protein n=2 Tax=Gimesia T... [more]
A0A517VU77_9PLAN1.200e-3970.30Uncharacterized protein n=4 Tax=Gimesia aquarii Ta... [more]
A0A517VHK5_9PLAN3.080e-3967.92Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A6CAQ2_9PLAN6.690e-3866.98Uncharacterized protein n=8 Tax=Planctomycetaceae ... [more]
A0A2E7CXU1_9PLAN4.060e-1646.39Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A7C3WE13_9BACT2.350e-1137.76Tetratricopeptide repeat protein n=1 Tax=Planctomy... [more]
UPI001487E62A1.590e-936.84hypothetical protein n=1 Tax=Alienimonas chondri T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116253contigM-pyrifera_M_contig116253:2..328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score142.5
Seed ortholog evalue1.2e-31
Seed eggNOG ortholog344747.PM8797T_23731
Preferred namelspA
KEGG koko:K03101
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryother localisation
EggNOG free text desc.This protein specifically catalyzes the removal of signal peptides from prolipoproteins
EggNOG OGs2J0E3@203682,COG0597@1,COG0597@2
EC3.4.23.36
COG Functional cat.MU
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.485614-CDS-M-pyrifera_M_contig116253:1..3281622815679.485614-CDS-M-pyrifera_M_contig116253:1..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116253 2..328 +
1692277518.3503692-CDS-M-pyrifera_M_contig116253:1..3281692277518.3503692-CDS-M-pyrifera_M_contig116253:1..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116253 2..328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116253.3374.1prot_M-pyrifera_M_contig116253.3374.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116253 2..328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116253.3374.1

>prot_M-pyrifera_M_contig116253.3374.1 ID=prot_M-pyrifera_M_contig116253.3374.1|Name=mRNA_M-pyrifera_M_contig116253.3374.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
QRWERNLKLIPEHLRGGPCYLLGAGYAQLDRHGQAAAWYLWVPLGYAANP
QLSADASLKAADSLKAMGQSANALRLYQETVARYPTTAARQMAEQMINQL
MQEAGQKN*
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mRNA from alignment at M-pyrifera_M_contig116253:2..328+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116253.3374.1 ID=mRNA_M-pyrifera_M_contig116253.3374.1|Name=mRNA_M-pyrifera_M_contig116253.3374.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig116253:2..328+ (Macrocystis pyrifera P11B4 male)
CAGCGCTGGGAACGGAATCTGAAACTGATCCCGGAACATCTCCGGGGAGG CCCCTGTTATCTGCTTGGTGCGGGCTACGCTCAACTCGACCGTCACGGCC AGGCAGCAGCCTGGTATCTCTGGGTCCCCCTGGGTTATGCTGCCAATCCG CAGCTGTCCGCCGACGCCAGCCTCAAGGCCGCCGATTCACTCAAGGCCAT GGGACAGTCAGCCAATGCCCTGCGGCTCTACCAGGAAACCGTCGCTCGTT ATCCAACAACCGCAGCGCGACAGATGGCCGAACAGATGATCAATCAACTG ATGCAGGAAGCGGGTCAGAAAAACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116253:2..328+

>mRNA_M-pyrifera_M_contig116253.3374.1 ID=mRNA_M-pyrifera_M_contig116253.3374.1|Name=mRNA_M-pyrifera_M_contig116253.3374.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig116253:2..328+ (Macrocystis pyrifera P11B4 male)
CAGCGCTGGGAACGGAATCTGAAACTGATCCCGGAACATCTCCGGGGAGG
CCCCTGTTATCTGCTTGGTGCGGGCTACGCTCAACTCGACCGTCACGGCC
AGGCAGCAGCCTGGTATCTCTGGGTCCCCCTGGGTTATGCTGCCAATCCG
CAGCTGTCCGCCGACGCCAGCCTCAAGGCCGCCGATTCACTCAAGGCCAT
GGGACAGTCAGCCAATGCCCTGCGGCTCTACCAGGAAACCGTCGCTCGTT
ATCCAACAACCGCAGCGCGACAGATGGCCGAACAGATGATCAATCAACTG
ATGCAGGAAGCGGGTCAGAAAAACTGACAGCGCTGGGAACGGAATCTGAA
ACTGATCCCGGAACATCTCCGGGGAGGCCCCTGTTATCTGCTTGGTGCGG
GCTACGCTCAACTCGACCGTCACGGCCAGGCAGCAGCCTGGTATCTCTGG
GTCCCCCTGGGTTATGCTGCCAATCCGCAGCTGTCCGCCGACGCCAGCCT
CAAGGCCGCCGATTCACTCAAGGCCATGGGACAGTCAGCCAATGCCCTGC
GGCTCTACCAGGAAACCGTCGCTCGTTATCCAACAACCGCAGCGCGACAG
ATGGCCGAACAGATGATCAATCAACTGATGCAGGAAGCGGGTCAGAAAAA
CTGA
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