mRNA_M-pyrifera_M_contig116218.3368.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116218.3368.1
Unique NamemRNA_M-pyrifera_M_contig116218.3368.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig116218.3368.1 vs. uniprot
Match: G9MBA2_THET8 (Cas_Cas4 domain-containing protein n=6 Tax=Thermus TaxID=270 RepID=G9MBA2_THET8)

HSP 1 Score: 57.8 bits (138), Expect = 1.020e-7
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   10 YKYAGRIDMVARLGTKAYVLDVKTSSMVHPTYSMQLAAYAHAIREMGSLDEDG 168
            ++YAGR+D+VARLG +  V+D+KTS  V+P + +Q+ AYA A+RE G   E G
Sbjct:  154 HRYAGRVDLVARLGGRVVVVDLKTSPRVYPEHLLQVGAYALALREEGLEVEGG 206
[Close]
BLAST of mRNA_M-pyrifera_M_contig116218.3368.1 vs. uniprot
Match: UPI001FAA10DA (Dna2/Cas4 domain-containing protein n=1 Tax=Thermus sp. SYSU G00630 TaxID=2908145 RepID=UPI001FAA10DA)

HSP 1 Score: 55.5 bits (132), Expect = 1.310e-7
Identity = 25/53 (47.17%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   10 YKYAGRIDMVARLGTKAYVLDVKTSSMVHPTYSMQLAAYAHAIREMGSLDEDG 168
            ++YAGR+D+VARLG +  V+D+KTS+ V+P + +Q+ AYA A++  G   E G
Sbjct:   28 HRYAGRVDLVARLGGRLVVVDLKTSAQVYPEHLLQVGAYALALQAEGIAVEGG 80
[Close]
BLAST of mRNA_M-pyrifera_M_contig116218.3368.1 vs. uniprot
Match: H9ZV63_THETH (Cas_Cas4 domain-containing protein n=1 Tax=Thermus thermophilus JL-18 TaxID=798128 RepID=H9ZV63_THETH)

HSP 1 Score: 55.1 bits (131), Expect = 9.700e-7
Identity = 24/47 (51.06%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   10 YKYAGRIDMVARLGTKAYVLDVKTSSMVHPTYSMQLAAYAHAIREMG 150
            ++YAGR+D+VARLG +  V+D+KTS+ V+P + +Q+ AYA A+R  G
Sbjct:  154 HRYAGRVDLVARLGGRPVVVDLKTSARVYPEHLLQVGAYALALRAEG 200
[Close]
BLAST of mRNA_M-pyrifera_M_contig116218.3368.1 vs. uniprot
Match: UPI001FA9D166 (PD-(D/E)XK nuclease family protein n=1 Tax=Thermus sp. SYSU G00630 TaxID=2908145 RepID=UPI001FA9D166)

HSP 1 Score: 54.7 bits (130), Expect = 1.380e-6
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   10 YKYAGRIDMVARLGTKAYVLDVKTSSMVHPTYSMQLAAYAHAIREMGSLDEDG 168
            ++YAGR+D+VARLG +  V+D+KTS   +P + +Q+ AYA A+R  G   E G
Sbjct:  155 HRYAGRVDLVARLGGRVVVVDLKTSPRAYPEHLLQVGAYALALRAEGVAVEGG 207
[Close]
BLAST of mRNA_M-pyrifera_M_contig116218.3368.1 vs. uniprot
Match: A0A430SFE2_THESC (PDDEXK_1 domain-containing protein n=4 Tax=Thermus TaxID=270 RepID=A0A430SFE2_THESC)

HSP 1 Score: 53.1 bits (126), Expect = 5.020e-6
Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:   16 YAGRIDMVARLGTKAYVLDVKTSSMVHPTYSMQLAAYAHAIREMGSLDEDGKEPIEAVDALVLHLDRRTGVATEYHVGDMELAFNGFKSA 285
            YAGR+D+VA LG +  VLD+KTS   +P + +Q+ AYA A+RE G L  DG         LVL L     VA E  + +   AF G + A
Sbjct:  157 YAGRVDLVAFLGGRVVVLDLKTSPRAYPEHLLQVGAYALALREEG-LPVDG--------GLVLALREGLSVA-EVPLDEAAEAFLGLRRA 236
[Close]
BLAST of mRNA_M-pyrifera_M_contig116218.3368.1 vs. uniprot
Match: A0A7R7YI58_THETH (Cas_Cas4 domain-containing protein n=1 Tax=Thermus thermophilus TaxID=274 RepID=A0A7R7YI58_THETH)

HSP 1 Score: 52.8 bits (125), Expect = 6.730e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   16 YAGRIDMVARLGTKAYVLDVKTSSMVHPTYSMQLAAYAHAIREMGSLDEDG 168
            YAGR+D+VA LG + YV+D+KTSS  +P + +Q+  YA A+ E G   E G
Sbjct:  156 YAGRVDLVATLGGRLYVVDLKTSSRAYPEHLLQVGGYALALWEEGVRVEGG 206
[Close]
BLAST of mRNA_M-pyrifera_M_contig116218.3368.1 vs. uniprot
Match: G8NE48_9DEIN (Uncharacterized protein n=1 Tax=Thermus sp. CCB_US3_UF1 TaxID=1111069 RepID=G8NE48_9DEIN)

HSP 1 Score: 51.6 bits (122), Expect = 1.820e-5
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:   16 YAGRIDMVARLGTKAYVLDVKTSSMVHPTYSMQLAAYAHAIREMGSLDE--------DGKEPIE 183
            YAGR D+VARLG K +V+D+KTS   +P + +Q+ AYA A+   G   E        DG  P+E
Sbjct:  157 YAGRTDLVARLGGKLWVVDLKTSPRAYPEHFLQVGAYALALEGEGLRVEGGLVLCLGDGASPVE 220
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116218.3368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
G9MBA2_THET81.020e-750.94Cas_Cas4 domain-containing protein n=6 Tax=Thermus... [more]
UPI001FAA10DA1.310e-747.17Dna2/Cas4 domain-containing protein n=1 Tax=Thermu... [more]
H9ZV63_THETH9.700e-751.06Cas_Cas4 domain-containing protein n=1 Tax=Thermus... [more]
UPI001FA9D1661.380e-647.17PD-(D/E)XK nuclease family protein n=1 Tax=Thermus... [more]
A0A430SFE2_THESC5.020e-642.22PDDEXK_1 domain-containing protein n=4 Tax=Thermus... [more]
A0A7R7YI58_THETH6.730e-649.02Cas_Cas4 domain-containing protein n=1 Tax=Thermus... [more]
G8NE48_9DEIN1.820e-543.75Uncharacterized protein n=1 Tax=Thermus sp. CCB_US... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116218contigM-pyrifera_M_contig116218:6..320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.2512453-CDS-M-pyrifera_M_contig116218:5..3201622815679.2512453-CDS-M-pyrifera_M_contig116218:5..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116218 6..320 +
1692277518.2553062-CDS-M-pyrifera_M_contig116218:5..3201692277518.2553062-CDS-M-pyrifera_M_contig116218:5..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116218 6..320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116218.3368.1prot_M-pyrifera_M_contig116218.3368.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116218 6..320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116218.3368.1

>prot_M-pyrifera_M_contig116218.3368.1 ID=prot_M-pyrifera_M_contig116218.3368.1|Name=mRNA_M-pyrifera_M_contig116218.3368.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
SHRYKYAGRIDMVARLGTKAYVLDVKTSSMVHPTYSMQLAAYAHAIREMG
SLDEDGKEPIEAVDALVLHLDRRTGVATEYHVGDMELAFNGFKSALFLWR
ILQNK
back to top

mRNA from alignment at M-pyrifera_M_contig116218:6..320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116218.3368.1 ID=mRNA_M-pyrifera_M_contig116218.3368.1|Name=mRNA_M-pyrifera_M_contig116218.3368.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig116218:6..320+ (Macrocystis pyrifera P11B4 male)
TCCCATCGATACAAATACGCTGGTCGAATTGACATGGTTGCGCGTTTGGG
GACAAAAGCGTATGTATTAGATGTGAAAACATCTTCGATGGTGCATCCAA
CATACAGCATGCAATTGGCAGCTTATGCACATGCCATTCGTGAGATGGGT
TCTCTTGATGAGGATGGGAAAGAGCCAATTGAAGCTGTAGATGCATTAGT
ACTTCATCTTGACCGACGAACTGGTGTAGCAACAGAGTATCATGTTGGTG
ACATGGAGCTTGCTTTCAATGGATTTAAGTCAGCACTCTTCTTATGGAGA
ATCCTTCAAAACAAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig116218:6..320+

>mRNA_M-pyrifera_M_contig116218.3368.1 ID=mRNA_M-pyrifera_M_contig116218.3368.1|Name=mRNA_M-pyrifera_M_contig116218.3368.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig116218:6..320+ (Macrocystis pyrifera P11B4 male)
TCCCATCGATACAAATACGCTGGTCGAATTGACATGGTTGCGCGTTTGGG
GACAAAAGCGTATGTATTAGATGTGAAAACATCTTCGATGGTGCATCCAA
CATACAGCATGCAATTGGCAGCTTATGCACATGCCATTCGTGAGATGGGT
TCTCTTGATGAGGATGGGAAAGAGCCAATTGAAGCTGTAGATGCATTAGT
ACTTCATCTTGACCGACGAACTGGTGTAGCAACAGAGTATCATGTTGGTG
ACATGGAGCTTGCTTTCAATGGATTTAAGTCAGCACTCTTCTTATGGAGA
ATCCTTCAAAACAAATCCCATCGATACAAATACGCTGGTCGAATTGACAT
GGTTGCGCGTTTGGGGACAAAAGCGTATGTATTAGATGTGAAAACATCTT
CGATGGTGCATCCAACATACAGCATGCAATTGGCAGCTTATGCACATGCC
ATTCGTGAGATGGGTTCTCTTGATGAGGATGGGAAAGAGCCAATTGAAGC
TGTAGATGCATTAGTACTTCATCTTGACCGACGAACTGGTGTAGCAACAG
AGTATCATGTTGGTGACATGGAGCTTGCTTTCAATGGATTTAAGTCAGCA
CTCTTCTTATGGAGAATCCTTCAAAACAAA
back to top