mRNA_M-pyrifera_M_contig116162.3351.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116162.3351.1
Unique NamemRNA_M-pyrifera_M_contig116162.3351.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig116162.3351.1 vs. uniprot
Match: A0A3D1GCM2_9BACT (Uncharacterized protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GCM2_9BACT)

HSP 1 Score: 151 bits (382), Expect = 5.130e-41
Identity = 83/184 (45.11%), Postives = 112/184 (60.87%), Query Frame = 1 
Query:    1 LLINEDEVYGDTTSIGTYSIYRVSSSWRGSSFRNSSDIVFDEGELIGQFSDADVDTSGIIYVELTGSWKDDYINYFNMSDDTRDDA-YKNGDFGLAVIPNAGNSKIVYANYSLSNLTAFDSDTTSRFILDWGVDIDRTGEIDNPERIILDSNFDRILQFNLAEIADQIGNKNFARVAIEFKIDT 549
            L +N   VYGDT S GTY+IYRV+SSWRG++++ S DI  D  ELIG FSDADVDT+G +  +L GSW+  Y  YF M DD+  DA Y+  DFGLA++P+  N+KI+Y     S++     DTT   +LDWG D+ RT    N   I L S ++ +LQ ++ +       KN  R  + F  DT
Sbjct:  108 LKVNTAYVYGDTLSEGTYNIYRVTSSWRGTTYKLSDDISTD-AELIGSFSDADVDTNGFVRADLGGSWRTTYQQYFEMEDDSARDADYRANDFGLAIVPDPSNTKILYTTMGSSSIEIAGEDTTVYTMLDWGHDVSRTNIPVNGSEITLQSTYENVLQLDITDAVRSSNLKNIVRAELVFSEDT 290
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116162.3351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3D1GCM2_9BACT5.130e-4145.11Uncharacterized protein n=1 Tax=Balneolaceae bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116162contigM-pyrifera_M_contig116162:2..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size549
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.3799396-CDS-M-pyrifera_M_contig116162:1..5501622815678.3799396-CDS-M-pyrifera_M_contig116162:1..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116162 2..550 +
1692277517.8649201-CDS-M-pyrifera_M_contig116162:1..5501692277517.8649201-CDS-M-pyrifera_M_contig116162:1..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116162 2..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116162.3351.1prot_M-pyrifera_M_contig116162.3351.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116162 2..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116162.3351.1

>prot_M-pyrifera_M_contig116162.3351.1 ID=prot_M-pyrifera_M_contig116162.3351.1|Name=mRNA_M-pyrifera_M_contig116162.3351.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
LLINEDEVYGDTTSIGTYSIYRVSSSWRGSSFRNSSDIVFDEGELIGQFS
DADVDTSGIIYVELTGSWKDDYINYFNMSDDTRDDAYKNGDFGLAVIPNA
GNSKIVYANYSLSNLTAFDSDTTSRFILDWGVDIDRTGEIDNPERIILDS
NFDRILQFNLAEIADQIGNKNFARVAIEFKIDT
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mRNA from alignment at M-pyrifera_M_contig116162:2..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116162.3351.1 ID=mRNA_M-pyrifera_M_contig116162.3351.1|Name=mRNA_M-pyrifera_M_contig116162.3351.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig116162:2..550+ (Macrocystis pyrifera P11B4 male)
TTGCTAATCAATGAAGATGAGGTTTACGGTGATACAACTTCAATTGGTAC
CTACTCTATTTATAGGGTTAGCTCATCCTGGAGAGGCTCATCATTTAGAA
ATAGTTCGGATATAGTATTTGATGAGGGAGAGCTAATAGGGCAGTTTTCT
GATGCCGACGTAGATACGAGCGGTATAATTTATGTGGAATTGACTGGTTC
TTGGAAAGATGATTACATAAACTATTTTAACATGTCTGATGATACCAGAG
ACGACGCCTATAAAAATGGTGATTTTGGGCTGGCAGTTATTCCAAATGCC
GGCAACTCAAAAATTGTATATGCAAACTATTCGTTAAGTAATCTCACTGC
TTTTGATAGCGATACAACATCCAGATTTATATTGGACTGGGGGGTTGATA
TAGATAGAACAGGAGAAATAGATAACCCAGAAAGAATTATTCTGGATAGT
AATTTTGATAGAATTTTACAATTTAACTTAGCTGAAATTGCAGATCAAAT
TGGAAATAAGAATTTTGCAAGAGTAGCGATAGAGTTCAAAATAGATACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116162:2..550+

>mRNA_M-pyrifera_M_contig116162.3351.1 ID=mRNA_M-pyrifera_M_contig116162.3351.1|Name=mRNA_M-pyrifera_M_contig116162.3351.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig116162:2..550+ (Macrocystis pyrifera P11B4 male)
TTGCTAATCAATGAAGATGAGGTTTACGGTGATACAACTTCAATTGGTAC
CTACTCTATTTATAGGGTTAGCTCATCCTGGAGAGGCTCATCATTTAGAA
ATAGTTCGGATATAGTATTTGATGAGGGAGAGCTAATAGGGCAGTTTTCT
GATGCCGACGTAGATACGAGCGGTATAATTTATGTGGAATTGACTGGTTC
TTGGAAAGATGATTACATAAACTATTTTAACATGTCTGATGATACCAGAG
ACGACGCCTATAAAAATGGTGATTTTGGGCTGGCAGTTATTCCAAATGCC
GGCAACTCAAAAATTGTATATGCAAACTATTCGTTAAGTAATCTCACTGC
TTTTGATAGCGATACAACATCCAGATTTATATTGGACTGGGGGGTTGATA
TAGATAGAACAGGAGAAATAGATAACCCAGAAAGAATTATTCTGGATAGT
AATTTTGATAGAATTTTACAATTTAACTTAGCTGAAATTGCAGATCAAAT
TGGAAATAAGAATTTTGCAAGAGTAGCGATAGAGTTCAAAATAGATACAT
TGCTAATCAATGAAGATGAGGTTTACGGTGATACAACTTCAATTGGTACC
TACTCTATTTATAGGGTTAGCTCATCCTGGAGAGGCTCATCATTTAGAAA
TAGTTCGGATATAGTATTTGATGAGGGAGAGCTAATAGGGCAGTTTTCTG
ATGCCGACGTAGATACGAGCGGTATAATTTATGTGGAATTGACTGGTTCT
TGGAAAGATGATTACATAAACTATTTTAACATGTCTGATGATACCAGAGA
CGACGCCTATAAAAATGGTGATTTTGGGCTGGCAGTTATTCCAAATGCCG
GCAACTCAAAAATTGTATATGCAAACTATTCGTTAAGTAATCTCACTGCT
TTTGATAGCGATACAACATCCAGATTTATATTGGACTGGGGGGTTGATAT
AGATAGAACAGGAGAAATAGATAACCCAGAAAGAATTATTCTGGATAGTA
ATTTTGATAGAATTTTACAATTTAACTTAGCTGAAATTGCAGATCAAATT
GGAAATAAGAATTTTGCAAGAGTAGCGATAGAGTTCAAAATAGATACA
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