mRNA_M-pyrifera_M_contig116085.3345.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116085.3345.1
Unique NamemRNA_M-pyrifera_M_contig116085.3345.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116085.3345.1 vs. uniprot
Match: A0A7S2WCX6_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WCX6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.250e-29
Identity = 54/85 (63.53%), Postives = 72/85 (84.71%), Query Frame = 1
Query:    1 YRHGTSMRIAMRTLYKEGGVRRFYRGIGPALLQGPLARGGDAAANEGMLSLLNSLDASRPWPVELKTTFAAFAAGAFRIVIMPID 255
            YR+GTS ++A++TLYKEGG+RRFYRG+GPAL+QGP++R GD AAN GMLSLLNS +++R  PV  KT  A+FAAG +R+ +MP+D
Sbjct:   99 YRYGTSTKVALQTLYKEGGIRRFYRGVGPALIQGPMSRFGDTAANAGMLSLLNSQESTRDLPVAAKTACASFAAGLWRVFLMPVD 183          
BLAST of mRNA_M-pyrifera_M_contig116085.3345.1 vs. uniprot
Match: A0A059LM40_9CHLO (Uncharacterized protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LM40_9CHLO)

HSP 1 Score: 109 bits (272), Expect = 7.650e-27
Identity = 53/86 (61.63%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    1 YRHGTSMRIAMRTLYKEGGVRRFYRGIGPALLQGPLARGGDAAANEGMLSLLNSLDASRPWPVELKTTFAAFAAGAFRIVIMPIDA 258
            YR+GT+  +A++TLYKEGGV RFYRG+GPAL+QGPL+R GD AAN G+L+LLN   ++R  P+ LKT  A+ AAG FRI +MP+DA
Sbjct:  100 YRYGTTTTVALKTLYKEGGVVRFYRGLGPALVQGPLSRFGDTAANAGVLTLLNEHSSTRDMPIALKTAAASAAAGGFRIFLMPVDA 185          
BLAST of mRNA_M-pyrifera_M_contig116085.3345.1 vs. uniprot
Match: A0A383WF37_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WF37_TETOB)

HSP 1 Score: 110 bits (274), Expect = 1.050e-26
Identity = 54/86 (62.79%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    1 YRHGTSMRIAMRTLYKEGGVRRFYRGIGPALLQGPLARGGDAAANEGMLSLLNSLDASRPWPVELKTTFAAFAAGAFRIVIMPIDA 258
            YR GTS  +A+RTLY++GG+ RFY+G+GPALLQGPL R GD AAN G+LSLLN LDA+R  PV LKT  A+  AGA+R++++P+DA
Sbjct:  146 YRFGTSTSVALRTLYRDGGIVRFYQGVGPALLQGPLCRFGDTAANAGVLSLLNELDATRNLPVGLKTACASATAGAWRMLLLPLDA 231          
BLAST of mRNA_M-pyrifera_M_contig116085.3345.1 vs. uniprot
Match: D8U796_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U796_VOLCA)

HSP 1 Score: 107 bits (268), Expect = 8.540e-26
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 YRHGTSMRIAMRTLYKEGGVRRFYRGIGPALLQGPLARGGDAAANEGMLSLLNSLDASRPWPVELKTTFAAFAAGAFRIVIMPID 255
            YR+GT    A RTLYKEGG+ RFYRG+GPAL+QGPL+R GD AAN G L+LL+S ++S+  PV +KT  A+ AAGAFRI++MP+D
Sbjct:  116 YRYGTDTMTAFRTLYKEGGIPRFYRGLGPALIQGPLSRFGDTAANAGTLALLDSYESSKGLPVGVKTLVASSAAGAFRILLMPVD 200          
BLAST of mRNA_M-pyrifera_M_contig116085.3345.1 vs. uniprot
Match: A0A7S2A6F7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6F7_TRICV)

HSP 1 Score: 104 bits (260), Expect = 1.910e-25
Identity = 51/87 (58.62%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    1 YRHGTSMRIAMRTLYKEGGVRRFYRGIGPALLQGPLARGGDAAANEGMLSLLNSLDASRPWPVELKTTFAAFAAGAFRIVIMPIDAV 261
            YR+GTS  +A+RTLY +GG+ RFYRG+ PAL+QGPL+R GD AAN G+L+L+NS+DA++   V  KT  A+ AA AFRI +MP+D V
Sbjct:   53 YRNGTSFPVALRTLYADGGIPRFYRGVAPALIQGPLSRFGDTAANTGVLTLMNSMDATKDLSVGFKTVAASGAAAAFRIFLMPVDTV 139          
BLAST of mRNA_M-pyrifera_M_contig116085.3345.1 vs. uniprot
Match: A0A836BP93_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BP93_9CHLO)

HSP 1 Score: 105 bits (263), Expect = 2.180e-25
Identity = 54/87 (62.07%), Postives = 69/87 (79.31%), Query Frame = 1
Query:    1 YRHGTSMRIAMRTLYKEGGVRRFYRGIGPALLQGPLARGGDAAANEGMLSLLNSLDASRPWPVELKTTFAAFAAGAFRIVIMPIDAV 261
            YR+GT M  A+RTLYKEGGV RFYRG+ PAL+QGP++R GD AAN G L+LL+S ++SR  P  +KT  A+ AAGAFRI++MP+D V
Sbjct:   75 YRYGTDMTTALRTLYKEGGVPRFYRGLLPALVQGPMSRFGDTAANAGTLALLDSYESSRTLPSGVKTLAASAAAGAFRILLMPVDTV 161          
BLAST of mRNA_M-pyrifera_M_contig116085.3345.1 vs. uniprot
Match: A0A7S4L3W1_9EUKA (Hypothetical protein n=2 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4L3W1_9EUKA)

HSP 1 Score: 107 bits (266), Expect = 2.450e-25
Identity = 55/87 (63.22%), Postives = 71/87 (81.61%), Query Frame = 1
Query:    1 YRHGTSMRIAMRTLYKEGGVRRFYRGIGPALLQGPLARGGDAAANEGMLSLLNSLDASRPWPVELKTTFAAFAAGAFRIVIMPIDAV 261
            YR+GTS + AM+ LYKEGG+RRFY+G   ALLQGPL+R GD AAN G+L+LL+S+D++R  PV +KT FA+ AA A+RIV+MPID V
Sbjct:  233 YRYGTSTKEAMKKLYKEGGIRRFYKGYPAALLQGPLSRFGDTAANVGVLTLLDSMDSTRNLPVGIKTFFASSAAAAWRIVLMPIDTV 319          
BLAST of mRNA_M-pyrifera_M_contig116085.3345.1 vs. uniprot
Match: A0A2R5GDU3_9STRA (Solute carrier family 25 member 38-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDU3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.420e-25
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1
Query:    1 YRHGTSMRIAMRTLYKEGGVRRFYRGIGPALLQGPLARGGDAAANEGMLSLLNSLDASRPWPVELKTTFAAFAAGAFRIVIMPIDA 258
            YR+G +MR A  TLYKEGG+RRFYRG+GP L QGPL+R GD A+N GML+LL+S + +   PV +KT  A+F+A  FRI +MPIDA
Sbjct:  103 YRNGGTMREAFSTLYKEGGIRRFYRGVGPGLFQGPLSRFGDTASNAGMLALLDSSETTATLPVAVKTAAASFSAATFRIFLMPIDA 188          
BLAST of mRNA_M-pyrifera_M_contig116085.3345.1 vs. uniprot
Match: A0A7S1LE74_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LE74_NEODS)

HSP 1 Score: 103 bits (258), Expect = 4.410e-25
Identity = 53/88 (60.23%), Postives = 69/88 (78.41%), Query Frame = 1
Query:    1 YRHG-TSMRIAMRTLYKEGGVRRFYRGIGPALLQGPLARGGDAAANEGMLSLLNSLDASRPWPVELKTTFAAFAAGAFRIVIMPIDAV 261
            YRHG TSM  A++TLYKEGG+RR Y G+  AL+Q PL+R GD AAN GMLSL+ +LD  +  PV++KT FA+  AG+FRI++MP+DAV
Sbjct:   55 YRHGGTSMIQALKTLYKEGGIRRLYSGVSVALVQAPLSRFGDTAANAGMLSLVENLDGLKDLPVQVKTVFASVGAGSFRIMLMPVDAV 142          
BLAST of mRNA_M-pyrifera_M_contig116085.3345.1 vs. uniprot
Match: A0A5A8BYU3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8BYU3_CAFRO)

HSP 1 Score: 103 bits (257), Expect = 6.520e-25
Identity = 53/85 (62.35%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 YRHGTSMRIAMRTLYKEGGVRRFYRGIGPALLQGPLARGGDAAANEGMLSLLNSLDASRPWPVELKTTFAAFAAGAFRIVIMPID 255
            YRHGT+ R A+R LY EGGVRRFYRG+ PAL QGPL+R GD AAN GML+LL+  D++R  PV  KT  A+ AA  +RI +MPID
Sbjct:   54 YRHGTTTRQALRKLYAEGGVRRFYRGLAPALFQGPLSRFGDTAANAGMLALLDHYDSTRSLPVAAKTAAASTAAALWRICLMPID 138          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116085.3345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2WCX6_9STRA1.250e-2963.53Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A059LM40_9CHLO7.650e-2761.63Uncharacterized protein n=1 Tax=Helicosporidium sp... [more]
A0A383WF37_TETOB1.050e-2662.79Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
D8U796_VOLCA8.540e-2662.35Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A7S2A6F7_TRICV1.910e-2558.62Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A836BP93_9CHLO2.180e-2562.07Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7S4L3W1_9EUKA2.450e-2563.22Hypothetical protein n=2 Tax=Paramoeba aestuarina ... [more]
A0A2R5GDU3_9STRA3.420e-2560.47Solute carrier family 25 member 38-like n=1 Tax=Ho... [more]
A0A7S1LE74_NEODS4.410e-2560.23Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A5A8BYU3_CAFRO6.520e-2562.35Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116085contigM-pyrifera_M_contig116085:79..339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score102.8
Seed ortholog evalue7.5e-20
Seed eggNOG ortholog3067.XP_002954552.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the mitochondrial carrier (TC 2.A.29) family
EggNOG OGs28MPG@1,2QU7F@2759,34IZ6@3041,37YV5@33090
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size261
Cds size243
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.8732204-UTR-M-pyrifera_M_contig116085:78..961622815677.8732204-UTR-M-pyrifera_M_contig116085:78..96Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116085 79..96 +
1692277517.563305-UTR-M-pyrifera_M_contig116085:78..961692277517.563305-UTR-M-pyrifera_M_contig116085:78..96Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116085 79..96 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.8842108-CDS-M-pyrifera_M_contig116085:96..3391622815677.8842108-CDS-M-pyrifera_M_contig116085:96..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116085 97..339 +
1692277517.5861468-CDS-M-pyrifera_M_contig116085:96..3391692277517.5861468-CDS-M-pyrifera_M_contig116085:96..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116085 97..339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116085.3345.1prot_M-pyrifera_M_contig116085.3345.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116085 97..339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116085.3345.1

>prot_M-pyrifera_M_contig116085.3345.1 ID=prot_M-pyrifera_M_contig116085.3345.1|Name=mRNA_M-pyrifera_M_contig116085.3345.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
MRIAMRTLYKEGGVRRFYRGIGPALLQGPLARGGDAAANEGMLSLLNSLD
ASRPWPVELKTTFAAFAAGAFRIVIMPIDAV
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mRNA from alignment at M-pyrifera_M_contig116085:79..339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116085.3345.1 ID=mRNA_M-pyrifera_M_contig116085.3345.1|Name=mRNA_M-pyrifera_M_contig116085.3345.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig116085:79..339+ (Macrocystis pyrifera P11B4 male)
TATCGTCATGGTACTTCGATGCGAATCGCGATGCGGACGCTGTACAAGGA GGGCGGAGTGCGTCGCTTCTACCGGGGCATCGGACCGGCTCTCTTGCAGG GTCCGCTCGCCAGAGGCGGGGATGCGGCGGCGAACGAAGGCATGCTCTCC CTCCTCAACTCGCTCGATGCCTCCAGGCCGTGGCCCGTAGAACTCAAAAC CACCTTCGCCGCATTCGCTGCCGGAGCATTCCGAATCGTCATCATGCCCA TCGACGCAGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116085:79..339+

>mRNA_M-pyrifera_M_contig116085.3345.1 ID=mRNA_M-pyrifera_M_contig116085.3345.1|Name=mRNA_M-pyrifera_M_contig116085.3345.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig116085:79..339+ (Macrocystis pyrifera P11B4 male)
ATGCGAATCGCGATGCGGACGCTGTACAAGGAGGGCGGAGTGCGTCGCTT
CTACCGGGGCATCGGACCGGCTCTCTTGCAGGGTCCGCTCGCCAGAGGCG
GGGATGCGGCGGCGAACGAAGGCATGCTCTCCCTCCTCAACTCGCTCGAT
GCCTCCAGGCCGTGGCCCGTAGAACTCAAAACCACCTTCGCCGCATTCGC
TGCCGGAGCATTCCGAATCGTCATCATGCCCATCGACGCAGTAATGCGAA
TCGCGATGCGGACGCTGTACAAGGAGGGCGGAGTGCGTCGCTTCTACCGG
GGCATCGGACCGGCTCTCTTGCAGGGTCCGCTCGCCAGAGGCGGGGATGC
GGCGGCGAACGAAGGCATGCTCTCCCTCCTCAACTCGCTCGATGCCTCCA
GGCCGTGGCCCGTAGAACTCAAAACCACCTTCGCCGCATTCGCTGCCGGA
GCATTCCGAATCGTCATCATGCCCATCGACGCAGTA
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