mRNA_M-pyrifera_M_contig116062.3339.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116062.3339.1
Unique NamemRNA_M-pyrifera_M_contig116062.3339.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116062.3339.1 vs. uniprot
Match: A0A7C3XWL6_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C3XWL6_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 8.590e-20
Identity = 53/148 (35.81%), Postives = 87/148 (58.78%), Query Frame = 1
Query:  103 LDDAVAAMATYRSGDSPEPLELVYGLTVKAQGSDAARRAMAERLAGLLDGNATIEARTFAYKQLHLIGGDESVPVLSRLLGDSELAEVALYALDGIRTPAADRALRQALNTAPSNLKVSIVNSLAERRDAFSVNTLAGLVYKRDDALA 546
            L+DA+A +  Y+ GD  +PL+ +    V++ G+   R A+A +LA +L G+AT +A+ F  +QL++      VPV+++LL D +L+ +A Y L+ +  P A  ALR AL      L V ++NS+  RRD  +V  L  ++   D+A A
Sbjct:   33 LNDALAKLPKYKLGDDRKPLDAINSAVVQSAGNPQERAAIAAKLAAVLSGDATHDAKDFCCRQLYICATAAEVPVVAKLLTDEKLSHMARYVLERMAEPEAGTALRAALPNVKGKLLVGVINSIGNRRDVQAVPALVAILNGTDNAAA 180          
BLAST of mRNA_M-pyrifera_M_contig116062.3339.1 vs. uniprot
Match: A0A3N5LI67_9BACT (HEAT repeat domain-containing protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5LI67_9BACT)

HSP 1 Score: 93.2 bits (230), Expect = 9.950e-19
Identity = 64/156 (41.03%), Postives = 89/156 (57.05%), Query Frame = 1
Query:   94 LEKLDDAVAAMATYRSGDSPEPLELVYGLTVKAQGSDAARRA-MAERLAGLLDGNATIEARTFAYKQLHLIGGDESVPVLSRLLGDSELAEVALYALDGIRTPAADRALRQALNTAPSNLKVSIVNSLAERRDAFSVNTLAGLVYKRDDALASAAI 558
            L +++ A+A +A+Y  G   +PL  V    V+A  S+A   A + ERL G L   ATIE R F  +QL LIG   SVPVL+R+L ++E  ++A YAL+ I  P A  ALR AL       K  ++ SL +RRD+ +V  LA L    D  +A AA+
Sbjct:   28 LSQIEPALAKVASYEYGQDFKPLAEVTEF-VRATKSNAELLARLEERLIGFLGSKATIEGRKFVCEQLSLIGTKASVPVLTRMLAETETGDMARYALERIPAPEAGEALRTALAKVNGKQKAGVITSLGQRRDSQAVPLLAPLAAGDDPTIAVAAV 182          
BLAST of mRNA_M-pyrifera_M_contig116062.3339.1 vs. uniprot
Match: A0A7C2YAQ8_9BACT (ThuA domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C2YAQ8_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 9.450e-18
Identity = 56/155 (36.13%), Postives = 90/155 (58.06%), Query Frame = 1
Query:   97 EKLDDAVAAMATYRSGDSPEPLELVYGLTVKAQGSDAARRAMAERLAGLL-DGNATIEARTFAYKQLHLIGGDESVPVLSRLLGDSELAEVALYALDGIRTPAADRALRQALNTAPSNLKVSIVNSLAERRDAFSVNTLAGLVYKRDDALASAAI 558
            ++L+     +ATY  G S E +  +      A GS   ++  A+RL  LL   N T+  + F  +QL  IG   SVP L+R+L DS  +++A +AL+ I  PA D+ALR+AL+     +++ ++N++ +RRDA +V+ L+ L+   D   ASAAI
Sbjct:  295 DELNQLFEKVATYEYGQSREAMVNLIEYFRFAAGSPKLQQQNAKRLLQLLTSNNTTLAGKQFVCEQLSRIGSKASVPTLARMLQDSATSDMARFALERIPDPAVDKALRKALSQTTGKIRIGLINTIGQRRDAKAVSALSKLIENSDPLTASAAI 449          
BLAST of mRNA_M-pyrifera_M_contig116062.3339.1 vs. uniprot
Match: A0A6A0HXB5_9BACT (ThuA domain-containing protein n=2 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A6A0HXB5_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 2.380e-17
Identity = 56/153 (36.60%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  100 KLDDAVAAMATYRSGDSPEPLELVYGLTVKAQGSDAARRAMAERLAGLLDGNATIEARTFAYKQLHLIGGDESVPVLSRLLGDSELAEVALYALDGIRTPAADRALRQALNTAPSNLKVSIVNSLAERRDAFSVNTLAGLVYKRDDALASAAI 558
            ++D     + TY  G S EPL  +      A  S   ++    RL  +L GNAT   + F+ +QL LIG   SVP L +LL DS  +++A YAL+ I  PA D+ALR AL+ +   +++ I+N++ +RRDA +V  +  L    +   A+AAI
Sbjct:  297 EIDQLFEKIKTYEYGQSREPLVNLIEYFRLAASSAKLQQQNESRLLQILTGNATPAGKQFSCEQLSLIGWKASVPTLIKLLHDSSTSDMARYALERIPDPAVDKALRNALSKSSGKIRLGIINTIGQRRDANAVAEMGKLAKNSETLTAAAAI 449          
BLAST of mRNA_M-pyrifera_M_contig116062.3339.1 vs. uniprot
Match: A0A7C3J0M7_9BACT (F5/8 type C domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C3J0M7_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 6.640e-16
Identity = 57/143 (39.86%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  130 TYRSGDSPEPLELVYGLTVKAQGSDAARRAMAERLAGLL-DGNATIEARTFAYKQLHLIGGDESVPVLSRLLGDSELAEVALYALDGIRTPAADRALRQALNTAPSNLKVSIVNSLAERRDAFSVNTLAGLVYKRDDALASAA 555
            T + G++    + +    V++ G  A R+ + + LA L  D  AT++AR+FA +QL ++G   SVP L+ LL D  L+ +A YAL  +  P A +ALR AL +A     V IVNS+ ERRD  +V TL  L+   D A+A AA
Sbjct:   43 TAKVGEATGEFQAIASKAVESLGDPALRKELEKHLAALAADKQATLDARSFACRQLMMMGTAASVPALATLLPDEPLSHMARYALQPMTCPEAGKALRGALASAKGATLVGIVNSVGERRDVDAVPTLVRLLKDPDAAVALAA 185          
BLAST of mRNA_M-pyrifera_M_contig116062.3339.1 vs. uniprot
Match: A0A7V2V3G4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V2V3G4_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 3.130e-15
Identity = 58/174 (33.33%), Postives = 95/174 (54.60%), Query Frame = 1
Query:   37 LAVLFVGSLVPLTADARSVLEKLDDAVAAMATYRSGDSPEPLELVYGLTVKAQGSDAARRAMAERLAGLLDGNATIEARTFAYKQLHLIGGDESVPVLSRLLGDSELAEVALYALDGIRT-PAADRALRQALNTAPSNLKVSIVNSLAERRDAFSVNTLAGLVYKRDDALASAA 555
            +A+L  G+   + ADA S+ +  D+A A  A +  G S      V     +++G  A RR +A+RL  +L G A +EA+  A ++L ++GG + VP ++ +L    L+ +A Y L   R  PAA  ALR+AL  A  +L++ ++ S+ E RDA +   +A ++   D  L  AA
Sbjct:   10 MALLHAGACGAVAADAGSLTD--DEAFAGAAAWTKGGSRAAWTAVEEKVRESKGDAARRRDLAKRLTAILKGEAAVEAKDAALRELRVVGGADDVPAVASMLPVPALSHMARYVLQSWREIPAAADALREALGKAEGDLRLGLLESIGEIRDAKAAVPIAAMLKSGDAVLVEAA 181          
BLAST of mRNA_M-pyrifera_M_contig116062.3339.1 vs. uniprot
Match: A0A3D3UXX2_9BACT (ThuA domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3D3UXX2_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 9.660e-15
Identity = 52/156 (33.33%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   88 SVLEKLDDAVAAMATYRSGDSPEPLELVYGLTVKAQGSDAARRAMAERLAGLLDGNATIEARTFAYKQLHLIGGDESVPVLSRLLGDSELAEVALYALDGIRTPAADRALRQALNTAPSNLKVSIVNSLAERRDAFSVNTLAGLVYKRDDALASAA 555
            S + +L   +  + TY  G S   L  V     KA G+ A    + + L G+LD +A    + F  ++L +IG ++SVP L+++L   E +++A YAL+ I   A D+ALR +L  A  N ++ I+NSL +RRD  +V  L  ++ + +   A AA
Sbjct:  309 SDMAELQGLLQKVKTYDWGQSRLALTEVSEAVKKAHGNKAELAKVEKALLGVLDSDAKRAGKQFVCRELSIIGTEQSVPTLTKMLAGEETSDMARYALERIPGSAVDKALRGSLRKARGNARIGIINSLGQRRDKGAVRNLRRILGRTNQETAIAA 464          
BLAST of mRNA_M-pyrifera_M_contig116062.3339.1 vs. uniprot
Match: A0A532ULC5_9BACT (ThuA domain-containing protein n=1 Tax=Planctomycetes bacterium B3_Pla TaxID=2012488 RepID=A0A532ULC5_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 3.860e-13
Identity = 54/156 (34.62%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   88 SVLEKLDDAVAAMATYRSGDSPEPLELVYGLTVKAQGSDAARRAMAERLAGLLDGNATIEARTFAYKQLHLIGGDESVPVLSRLLGDSELAEVALYALDGIRTPAADRALRQALNTAPSNLKVSIVNSLAERRDAFSVNTLAGLVYKRDDALASAA 555
            S + +L + +A +  Y  G S   L  +     KA G+ A    + + L G L  +A    R F  ++L +IG ++SVPVL+++L   + +++A YAL+ I   A D ALR++L  A    K+ IVNSL +R D  +   L  LV  ++ ALA+AA
Sbjct:  308 SDMAELKELLAKVKEYDWGQSRLALTEISETVKKAHGNKAELAKIEKALLGALP-DAKQAGRQFLCRELSIIGTEQSVPVLAKMLAGEKTSDMARYALERIPGAAVDEALRKSLRKAKGKAKIGIVNSLGQRGDKKAARPLTRLVTGKNKALAAAA 462          
BLAST of mRNA_M-pyrifera_M_contig116062.3339.1 vs. uniprot
Match: A0A1G2YAW9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium RBG_13_44_8b TaxID=1801960 RepID=A0A1G2YAW9_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 1.020e-11
Identity = 52/157 (33.12%), Postives = 83/157 (52.87%), Query Frame = 1
Query:   97 EKLDDAVAAMA---TYRSGDSPEPLELVYGLTVKAQGSDAARRAMAERLAGLLD-GNATIEARTFAYKQLHLIGGDESVPVLSRLLGDSELAEVALYALDGIRTPAADRALRQALNTAPSNLKVSIVNSLAERRDAFSVNTLAGLVYKRDDALASAA 555
            E+L+ A A +    TY  G +   L        K  G       M + L  +L+  +AT   + F  +QL +IG ++SVPV++++L   E +++A YAL+ I   A ++ALR  L  A    KV I+NSL +R D  +V+ L+ L+   D+ +A AA
Sbjct:    3 EQLEIAAALLEKIKTYDWGQNRAALTEAEDAIKKTYGKKDEMAKMEKSLLSVLELPDATRAGKDFICRQLSVIGTEQSVPVMAKMLTQDEYSDMARYALERIPGSAVEKALRDTLPAASGRAKVGIINSLGQRSDTKAVDALSKLLGDSDETVAVAA 159          
BLAST of mRNA_M-pyrifera_M_contig116062.3339.1 vs. uniprot
Match: A0A7V4HR79_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V4HR79_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 5.640e-11
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  241 LLDGNATIEARTFAYKQLHLIGGDESVPVLSRLLGDSELAEVALYALDGIRTPAADRALRQALNTAPSNLKVSIVNSLAERRDAFSVNTLAGLVYKRDDALASAA 555
            +L   AT + +  A ++L  +G  ++VPVL+ LLGD  L+ +A YAL+ +R PA D ALR+AL        + ++ SL  RRDA +V+ LA L+   D  +A AA
Sbjct:   86 VLQSGATQKEKADACRELAHLGTAKAVPVLASLLGDENLSHMARYALEPMRDPAVDAALREALGKVRGRPLIGVIGSLGARRDAKAVDALARLLADPDSEVAQAA 190          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116062.3339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A7C3XWL6_9BACT8.590e-2035.81Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A3N5LI67_9BACT9.950e-1941.03HEAT repeat domain-containing protein n=2 Tax=Acid... [more]
A0A7C2YAQ8_9BACT9.450e-1836.13ThuA domain-containing protein n=1 Tax=bacterium T... [more]
A0A6A0HXB5_9BACT2.380e-1736.60ThuA domain-containing protein n=2 Tax=candidate d... [more]
A0A7C3J0M7_9BACT6.640e-1639.86F5/8 type C domain-containing protein n=1 Tax=Plan... [more]
A0A7V2V3G4_9BACT3.130e-1533.33Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A3D3UXX2_9BACT9.660e-1533.33ThuA domain-containing protein n=1 Tax=Phycisphaer... [more]
A0A532ULC5_9BACT3.860e-1334.62ThuA domain-containing protein n=1 Tax=Planctomyce... [more]
A0A1G2YAW9_9BACT1.020e-1133.12Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7V4HR79_9BACT5.640e-1140.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116062contigM-pyrifera_M_contig116062:1..558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score71.2
Seed ortholog evalue5.5e-10
Seed eggNOG ortholog344747.PM8797T_11551
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.E-Z type HEAT repeats
EggNOG OGs2IZE1@203682,COG1413@1,COG1413@2
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size558
Cds size549
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.620909-CDS-M-pyrifera_M_contig116062:0..5491622815677.620909-CDS-M-pyrifera_M_contig116062:0..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116062 1..549 -
1692277517.463279-CDS-M-pyrifera_M_contig116062:0..5491692277517.463279-CDS-M-pyrifera_M_contig116062:0..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116062 1..549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.6316693-UTR-M-pyrifera_M_contig116062:549..5581622815677.6316693-UTR-M-pyrifera_M_contig116062:549..558Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116062 550..558 -
1692277517.4749212-UTR-M-pyrifera_M_contig116062:549..5581692277517.4749212-UTR-M-pyrifera_M_contig116062:549..558Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116062 550..558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116062.3339.1prot_M-pyrifera_M_contig116062.3339.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116062 1..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116062.3339.1

>prot_M-pyrifera_M_contig116062.3339.1 ID=prot_M-pyrifera_M_contig116062.3339.1|Name=mRNA_M-pyrifera_M_contig116062.3339.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
MLTRSATSVLAVLFVGSLVPLTADARSVLEKLDDAVAAMATYRSGDSPEP
LELVYGLTVKAQGSDAARRAMAERLAGLLDGNATIEARTFAYKQLHLIGG
DESVPVLSRLLGDSELAEVALYALDGIRTPAADRALRQALNTAPSNLKVS
IVNSLAERRDAFSVNTLAGLVYKRDDALASAAI
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mRNA from alignment at M-pyrifera_M_contig116062:1..558-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116062.3339.1 ID=mRNA_M-pyrifera_M_contig116062.3339.1|Name=mRNA_M-pyrifera_M_contig116062.3339.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig116062:1..558- (Macrocystis pyrifera P11B4 male)
CCGAGCCGCATGCTCACACGAAGCGCTACATCAGTACTCGCTGTACTCTT TGTTGGAAGTTTAGTACCCCTAACGGCAGACGCTCGAAGTGTGCTCGAAA AACTTGATGACGCAGTCGCCGCGATGGCGACATACCGGAGCGGCGATTCC CCCGAACCGCTTGAATTGGTGTACGGCCTCACGGTCAAAGCACAAGGTTC TGACGCCGCACGCCGCGCAATGGCTGAACGACTCGCAGGGCTGTTGGACG GTAATGCGACGATTGAAGCGCGGACGTTCGCGTACAAACAGCTCCACCTT ATCGGCGGCGATGAATCCGTACCCGTGCTCTCCCGATTATTGGGCGATTC GGAACTGGCCGAAGTCGCGCTATACGCACTCGACGGCATTCGTACACCAG CCGCAGACCGCGCGCTGCGTCAAGCCCTGAACACAGCCCCCTCTAATTTG AAGGTGAGCATCGTCAATTCACTTGCTGAACGCCGGGATGCGTTTAGCGT AAACACGCTTGCCGGTCTCGTCTACAAGCGCGACGATGCGCTTGCATCGG CTGCGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116062:1..558-

>mRNA_M-pyrifera_M_contig116062.3339.1 ID=mRNA_M-pyrifera_M_contig116062.3339.1|Name=mRNA_M-pyrifera_M_contig116062.3339.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig116062:1..558- (Macrocystis pyrifera P11B4 male)
ATGCTCACACGAAGCGCTACATCAGTACTCGCTGTACTCTTTGTTGGAAG
TTTAGTACCCCTAACGGCAGACGCTCGAAGTGTGCTCGAAAAACTTGATG
ACGCAGTCGCCGCGATGGCGACATACCGGAGCGGCGATTCCCCCGAACCG
CTTGAATTGGTGTACGGCCTCACGGTCAAAGCACAAGGTTCTGACGCCGC
ACGCCGCGCAATGGCTGAACGACTCGCAGGGCTGTTGGACGGTAATGCGA
CGATTGAAGCGCGGACGTTCGCGTACAAACAGCTCCACCTTATCGGCGGC
GATGAATCCGTACCCGTGCTCTCCCGATTATTGGGCGATTCGGAACTGGC
CGAAGTCGCGCTATACGCACTCGACGGCATTCGTACACCAGCCGCAGACC
GCGCGCTGCGTCAAGCCCTGAACACAGCCCCCTCTAATTTGAAGGTGAGC
ATCGTCAATTCACTTGCTGAACGCCGGGATGCGTTTAGCGTAAACACGCT
TGCCGGTCTCGTCTACAAGCGCGACGATGCGCTTGCATCGGCTGCGATTA
TGCTCACACGAAGCGCTACATCAGTACTCGCTGTACTCTTTGTTGGAAGT
TTAGTACCCCTAACGGCAGACGCTCGAAGTGTGCTCGAAAAACTTGATGA
CGCAGTCGCCGCGATGGCGACATACCGGAGCGGCGATTCCCCCGAACCGC
TTGAATTGGTGTACGGCCTCACGGTCAAAGCACAAGGTTCTGACGCCGCA
CGCCGCGCAATGGCTGAACGACTCGCAGGGCTGTTGGACGGTAATGCGAC
GATTGAAGCGCGGACGTTCGCGTACAAACAGCTCCACCTTATCGGCGGCG
ATGAATCCGTACCCGTGCTCTCCCGATTATTGGGCGATTCGGAACTGGCC
GAAGTCGCGCTATACGCACTCGACGGCATTCGTACACCAGCCGCAGACCG
CGCGCTGCGTCAAGCCCTGAACACAGCCCCCTCTAATTTGAAGGTGAGCA
TCGTCAATTCACTTGCTGAACGCCGGGATGCGTTTAGCGTAAACACGCTT
GCCGGTCTCGTCTACAAGCGCGACGATGCGCTTGCATCGGCTGCGATT
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