mRNA_M-pyrifera_M_contig116054.3336.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116054.3336.1
Unique NamemRNA_M-pyrifera_M_contig116054.3336.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116054.3336.1 vs. uniprot
Match: A0A843UPK2_COLES (ABC1 domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UPK2_COLES)

HSP 1 Score: 128 bits (321), Expect = 6.930e-34
Identity = 71/126 (56.35%), Postives = 90/126 (71.43%), Query Frame = 1
Query:    4 VRTHADVMPRAQLQKALESELGESGGGSDGTEFVGFDLEPVAAASIGQVHRAKLPDGRLVAVKVQYPGVAESVESDLANLRRLLVLGDTGGALPKGLFLDSIVEVAKEELSAECEYEEEARHQEAY 381
            VR  ADVMPR+QL   L++ELG        ++   FD EP+AAASIGQVHRA + +G  VAVK+QYPGVA S+ESD+ N+RRLL   D    +PKGLFLD  ++VAKEELS EC+YE EA +Q+ +
Sbjct:  104 VRQGADVMPRSQLNNVLDTELGPEWS----SKLSSFDYEPLAAASIGQVHRAVMKNGLEVAVKIQYPGVANSIESDIENVRRLL---DYTNLIPKGLFLDRAIKVAKEELSRECDYELEAANQKKF 222          
BLAST of mRNA_M-pyrifera_M_contig116054.3336.1 vs. uniprot
Match: A0A2P2JES8_RHIMU (Ubiquinone biosynthesis protein coq-8 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JES8_RHIMU)

HSP 1 Score: 130 bits (326), Expect = 1.390e-32
Identity = 72/133 (54.14%), Postives = 94/133 (70.68%), Query Frame = 1
Query:    4 VRTHADVMPRAQLQKALESELGESGGGSDGTEFVGFDLEPVAAASIGQVHRAKLPDGRLVAVKVQYPGVAESVESDLANLRRLLVLGDTGGALPKGLFLDSIVEVAKEELSAECEYEEEARHQEAYARELREA 402
            VR  ADVMPR+QL + L +ELG        T+   FD EP+AAASIGQVHRA + DGR VA+K+QYPGVA+S+ESD+ N++ LL   D    +PKGL+LD  ++VAKEELS EC+YE EA +Q+ +   L +A
Sbjct:  249 VRQGADVMPRSQLNQVLNAELGPDWS----TKLTSFDYEPLAAASIGQVHRAVIKDGRQVAMKIQYPGVADSIESDIENVKLLL---DYTNLIPKGLYLDRAIKVAKEELSRECDYELEASNQKRFCNLLSDA 374          
BLAST of mRNA_M-pyrifera_M_contig116054.3336.1 vs. uniprot
Match: A0A1D1YJG4_9ARAE (Chaperone activity of bc1 complex-like, mitochondrial n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YJG4_9ARAE)

HSP 1 Score: 129 bits (325), Expect = 2.300e-32
Identity = 72/126 (57.14%), Postives = 91/126 (72.22%), Query Frame = 1
Query:    4 VRTHADVMPRAQLQKALESELGESGGGSDGTEFVGFDLEPVAAASIGQVHRAKLPDGRLVAVKVQYPGVAESVESDLANLRRLLVLGDTGGALPKGLFLDSIVEVAKEELSAECEYEEEARHQEAY 381
            VR  ADVMPR+QL K L+SELG        ++   FD EP+AAASIGQVHRA + +G  VAVK+QYPGVA S+ESD+ N+RRLL   D    +PKGLFLD  ++VAKEELS EC+Y+ EA +Q+ +
Sbjct:  293 VRQGADVMPRSQLNKVLDSELGPEWS----SKLRSFDYEPLAAASIGQVHRAVMKNGLEVAVKIQYPGVANSIESDIENVRRLL---DYTNLIPKGLFLDRAIKVAKEELSRECDYQLEAANQKRF 411          
BLAST of mRNA_M-pyrifera_M_contig116054.3336.1 vs. uniprot
Match: A0A024GRQ5_9STRA (ABC1 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRQ5_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.310e-32
Identity = 70/127 (55.12%), Postives = 93/127 (73.23%), Query Frame = 1
Query:    1 RVRTHADVMPRAQLQKALESELGESGGGSDGTEFVGFDLEPVAAASIGQVHRAKLPDGRLVAVKVQYPGVAESVESDLANLRRLLVLGDTGGALPKGLFLDSIVEVAKEELSAECEYEEEARHQEAY 381
            RVR +A+VMP+AQL   LE+ELG+S      + F  FD  P+AAASIGQVHRA L  G  VA+KVQYPGVAES+ESDL NL+RL+   +    LP+GL++D I+ V KEEL+ EC+Y+ EA++Q+ +
Sbjct:  307 RVRQNANVMPKAQLHAQLETELGQSWS----SHFKEFDDNPIAAASIGQVHRAILTSGDRVAIKVQYPGVAESIESDLTNLKRLVTYTNI---LPRGLYIDEIIRVGKEELTLECDYKSEAKNQDYF 426          
BLAST of mRNA_M-pyrifera_M_contig116054.3336.1 vs. uniprot
Match: A0A0K9PAA3_ZOSMR (ABC1 protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PAA3_ZOSMR)

HSP 1 Score: 128 bits (322), Expect = 4.710e-32
Identity = 73/127 (57.48%), Postives = 90/127 (70.87%), Query Frame = 1
Query:    4 VRTHADVMPRAQLQKALESELGESGGGSDGTE-FVGFDLEPVAAASIGQVHRAKLPDGRLVAVKVQYPGVAESVESDLANLRRLLVLGDTGGALPKGLFLDSIVEVAKEELSAECEYEEEARHQEAY 381
            VR  ADVMPR QL   L +ELG     SD T   + FD EP+A+ASIGQVHRA   D  +VA+K+QYPGVA+S++SD+ N+RRLL   D    LPKGLFLD  ++VAKEELS EC+YE EAR Q+ +
Sbjct:  253 VRQGADVMPRTQLNNVLVAELG-----SDWTHNLISFDYEPLASASIGQVHRAVTNDDLVVAMKIQYPGVADSIDSDIENVRRLL---DYSNILPKGLFLDRAIKVAKEELSLECDYELEARSQKRF 371          
BLAST of mRNA_M-pyrifera_M_contig116054.3336.1 vs. uniprot
Match: A0A7R9UJX0_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UJX0_DIALT)

HSP 1 Score: 122 bits (307), Expect = 1.390e-31
Identity = 76/136 (55.88%), Postives = 92/136 (67.65%), Query Frame = 1
Query:    1 RVRTHADVMPRAQLQKALESELGESGGGSDGTEFV-GFDLEPVAAASIGQVHRAKLPDGRLVAVKVQYPGVAESVESDLANLRRLLVLGDTGGALPKGLFLDSIVEVAKEELSAECEYEEEARHQEAYARELREAL 405
            +VR  A++MP AQL   + SELG     +D  E V  F   P+AAASIGQVHR  L DGRL A+KVQYPGVA SV+SDLANLRRL       GALPK LF+D+I++VA++EL AEC+Y  EA   E Y   LR A+
Sbjct:  126 KVRASANIMPAAQLHTTISSELG-----TDWRERVRSFQETPLAAASIGQVHRVVLRDGRLAALKVQYPGVAASVDSDLANLRRL---AHYTGALPKTLFVDNIIKVARDELLAECDYVAEAASTERYGELLRCAM 253          
BLAST of mRNA_M-pyrifera_M_contig116054.3336.1 vs. uniprot
Match: A0A2C9VS92_MANES (ABC1 domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VS92_MANES)

HSP 1 Score: 127 bits (318), Expect = 1.820e-31
Identity = 70/133 (52.63%), Postives = 94/133 (70.68%), Query Frame = 1
Query:    4 VRTHADVMPRAQLQKALESELGESGGGSDGTEFVGFDLEPVAAASIGQVHRAKLPDGRLVAVKVQYPGVAESVESDLANLRRLLVLGDTGGALPKGLFLDSIVEVAKEELSAECEYEEEARHQEAYARELREA 402
            VR  ADVMPR+QL + L+SELG        T+   FD EP+AAASIGQVH+A   DG LVA+K+QYPGVA S++SD+ N++ LL   D    +PKGL+L+  ++VAKEELS EC+YE EA +Q+ + + L +A
Sbjct:  254 VRQGADVMPRSQLNRVLDSELGSDWS----TKLTSFDYEPIAAASIGQVHQAVTKDGMLVAMKIQYPGVANSIDSDIENVKLLL---DYTNLIPKGLYLERAMKVAKEELSRECDYELEATNQKRFRKLLSDA 379          
BLAST of mRNA_M-pyrifera_M_contig116054.3336.1 vs. uniprot
Match: A0A6H5JPB9_9PHAE (ABC1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPB9_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.330e-31
Identity = 71/127 (55.91%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 RVRTHADVMPRAQLQKALESELGESGGGSDGTEFVGFDLEPVAAASIGQVHRAKLPDGRLVAVKVQYPGVAESVESDLANLRRLLVLGDTGGALPKGLFLDSIVEVAKEELSAECEYEEEARHQEAY 381
            RVR  ADVMP  QL + LE  LG        ++   FD  P+AAASIGQVHRAKLPDG  VA+K+QYPGVA+SVESDL NL+RL+ L +    LP GL+++ I+ VA+EEL  EC+YE EA +QE +
Sbjct:  333 RVRQGADVMPLKQLHRQLEKNLGMDWR----SKLAAFDETPIAAASIGQVHRAKLPDGTDVAMKIQYPGVADSVESDLKNLQRLVQLTNI---LPPGLYIEEIIRVAREELGEECDYEREAANQERF 452          
BLAST of mRNA_M-pyrifera_M_contig116054.3336.1 vs. uniprot
Match: A0A6I9SDF9_ELAGV (protein ABC transporter 1, mitochondrial n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9SDF9_ELAGV)

HSP 1 Score: 126 bits (317), Expect = 2.610e-31
Identity = 70/126 (55.56%), Postives = 91/126 (72.22%), Query Frame = 1
Query:    4 VRTHADVMPRAQLQKALESELGESGGGSDGTEFVGFDLEPVAAASIGQVHRAKLPDGRLVAVKVQYPGVAESVESDLANLRRLLVLGDTGGALPKGLFLDSIVEVAKEELSAECEYEEEARHQEAY 381
            VR  ADVMPR+QL + L++ELG        ++   FD EP+AAASIGQVHRA + DG  VA+K+QYPGVA+S+ESD+ N+RRLL   D    +PKGLFLD  ++VAKEELS EC+Y  EA +Q+ +
Sbjct:  265 VRQGADVMPRSQLNEVLDAELGPDWS----SKLRSFDYEPLAAASIGQVHRAVMKDGLEVAMKIQYPGVADSIESDIENVRRLL---DYTNLIPKGLFLDKAMKVAKEELSRECDYVLEATNQKRF 383          
BLAST of mRNA_M-pyrifera_M_contig116054.3336.1 vs. uniprot
Match: A0A7S0DKU6_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DKU6_9EUKA)

HSP 1 Score: 123 bits (309), Expect = 2.750e-31
Identity = 67/127 (52.76%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 RVRTHADVMPRAQLQKALESELGESGGGSDGTEFVGFDLEPVAAASIGQVHRAKLPDGRLVAVKVQYPGVAESVESDLANLRRLLVLGDTGGALPKGLFLDSIVEVAKEELSAECEYEEEARHQEAY 381
            RVRT A+VMP+ QL + + S  G +       +F  FD +PVA ASIGQVH+A   DG  VAVKVQYPGVA  +++D+ANL+RL++LG   G +PKGLFLD+++  AKEEL+ EC+Y  EA++QE +
Sbjct:   14 RVRTEANVMPKWQLDEVMSSSFGSNWK----QQFKEFDEDPVAGASIGQVHQATTLDGVQVAVKVQYPGVARGIDADMANLQRLMLLG---GFVPKGLFLDNVLATAKEELTLECDYLREAKNQERF 133          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116054.3336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A843UPK2_COLES6.930e-3456.35ABC1 domain-containing protein n=1 Tax=Colocasia e... [more]
A0A2P2JES8_RHIMU1.390e-3254.14Ubiquinone biosynthesis protein coq-8 n=1 Tax=Rhiz... [more]
A0A1D1YJG4_9ARAE2.300e-3257.14Chaperone activity of bc1 complex-like, mitochondr... [more]
A0A024GRQ5_9STRA3.310e-3255.12ABC1 domain-containing protein n=1 Tax=Albugo cand... [more]
A0A0K9PAA3_ZOSMR4.710e-3257.48ABC1 protein n=1 Tax=Zostera marina TaxID=29655 Re... [more]
A0A7R9UJX0_DIALT1.390e-3155.88Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A2C9VS92_MANES1.820e-3152.63ABC1 domain-containing protein n=1 Tax=Manihot esc... [more]
A0A6H5JPB9_9PHAE2.330e-3155.91ABC1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6I9SDF9_ELAGV2.610e-3155.56protein ABC transporter 1, mitochondrial n=3 Tax=A... [more]
A0A7S0DKU6_9EUKA2.750e-3152.76Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116054contigM-pyrifera_M_contig116054:3..467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score119.4
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog3983.cassava4.1_003861m
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.AarF domain-containing protein kinase
EggNOG OGs37JWC@33090,3GE50@35493,4JGRK@91835,COG0661@1,KOG1234@2759
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Exons2
Model size405
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116054.3336.1prot_M-pyrifera_M_contig116054.3336.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116054 27..467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.4857235-UTR-M-pyrifera_M_contig116054:2..261622815677.4857235-UTR-M-pyrifera_M_contig116054:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116054 3..26 +
1692277517.3967972-UTR-M-pyrifera_M_contig116054:2..261692277517.3967972-UTR-M-pyrifera_M_contig116054:2..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116054 3..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.4972541-CDS-M-pyrifera_M_contig116054:26..771622815677.4972541-CDS-M-pyrifera_M_contig116054:26..77Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116054 27..77 +
1692277517.408092-CDS-M-pyrifera_M_contig116054:26..771692277517.408092-CDS-M-pyrifera_M_contig116054:26..77Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116054 27..77 +
1622815677.515977-CDS-M-pyrifera_M_contig116054:137..4671622815677.515977-CDS-M-pyrifera_M_contig116054:137..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116054 138..467 +
1692277517.4176068-CDS-M-pyrifera_M_contig116054:137..4671692277517.4176068-CDS-M-pyrifera_M_contig116054:137..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116054 138..467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116054.3336.1

>prot_M-pyrifera_M_contig116054.3336.1 ID=prot_M-pyrifera_M_contig116054.3336.1|Name=mRNA_M-pyrifera_M_contig116054.3336.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
MPRAQLQKALESELGESGGGSDGTEFVGFDLEPVAAASIGQVHRAKLPDG
RLVAVKVQYPGVAESVESDLANLRRLLVLGDTGGALPKGLFLDSIVEVAK
EELSAECEYEEEARHQEAYARELREAL
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mRNA from alignment at M-pyrifera_M_contig116054:3..467+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116054.3336.1 ID=mRNA_M-pyrifera_M_contig116054.3336.1|Name=mRNA_M-pyrifera_M_contig116054.3336.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig116054:3..467+ (Macrocystis pyrifera P11B4 male)
CGTGTGCGCACCCACGCAGACGTGATGCCGCGCGCACAGCTGCAGAAAGC GCTCGAATCGGAGCTCGGCGAGAGTGTCTGGGACCGTTTCGGCGGATTGT GGCGCATGGAAGGGGTAGAGGCAGCGGATGCGGAGGGTGGGGGCAGTGAC GGGACCGAGTTTGTGGGTTTCGACCTCGAACCCGTGGCAGCAGCCTCAAT CGGCCAAGTGCACCGAGCGAAATTGCCGGACGGGCGGCTTGTGGCCGTTA AGGTGCAATACCCGGGCGTTGCCGAGAGCGTGGAGAGCGACTTGGCCAAC TTGCGGCGGCTGCTGGTGCTGGGCGACACGGGGGGGGCGCTGCCGAAAGG ATTGTTTCTCGACTCGATCGTGGAAGTGGCCAAGGAGGAGCTGAGCGCAG AGTGCGAGTACGAGGAGGAGGCGAGGCACCAGGAGGCGTACGCGCGAGAG CTGCGGGAGGCTCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116054:3..467+

>mRNA_M-pyrifera_M_contig116054.3336.1 ID=mRNA_M-pyrifera_M_contig116054.3336.1|Name=mRNA_M-pyrifera_M_contig116054.3336.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig116054:3..467+ (Macrocystis pyrifera P11B4 male)
ATGCCGCGCGCACAGCTGCAGAAAGCGCTCGAATCGGAGCTCGGCGAGAG
TATGCCGCGCGCACAGCTGCAGAAAGCGCTCGAATCGGAGCTCGGCGAGA
GTGGTGGGGGCAGTGACGGGACCGAGTTTGTGGGTTTCGACCTCGAACCC
GTGGCAGCAGCCTCAATCGGCCAAGTGCACCGAGCGAAATTGCCGGACGG
GCGGCTTGTGGCCGTTAAGGTGCAATACCCGGGCGTTGCCGAGAGCGTGG
AGAGCGACTTGGCCAACTTGCGGCGGCTGCTGGTGCTGGGCGACACGGGG
GGGGCGCTGCCGAAAGGATTGTTTCTCGACTCGATCGTGGAAGTGGCCAA
GGAGGAGCTGAGCGCAGAGTGCGAGTACGAGGAGGAGGCGAGGCACCAGG
AGGCGTACGCGCGAGAGCTGCGGGAGGCTCTGGGTGGGGGCAGTGACGGG
ACCGAGTTTGTGGGTTTCGACCTCGAACCCGTGGCAGCAGCCTCAATCGG
CCAAGTGCACCGAGCGAAATTGCCGGACGGGCGGCTTGTGGCCGTTAAGG
TGCAATACCCGGGCGTTGCCGAGAGCGTGGAGAGCGACTTGGCCAACTTG
CGGCGGCTGCTGGTGCTGGGCGACACGGGGGGGGCGCTGCCGAAAGGATT
GTTTCTCGACTCGATCGTGGAAGTGGCCAAGGAGGAGCTGAGCGCAGAGT
GCGAGTACGAGGAGGAGGCGAGGCACCAGGAGGCGTACGCGCGAGAGCTG
CGGGAGGCTCTG
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