mRNA_M-pyrifera_M_contig11602.3330.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11602.3330.1
Unique NamemRNA_M-pyrifera_M_contig11602.3330.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11602.3330.1 vs. uniprot
Match: D7FLN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN8_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 7.550e-46
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = 1
Query:    1 LAAYALGASLMQTGVSGEQLTGFVVAFSAMTPIGILLGDLIENDGEDDTAGATCVALAAGTFLYVSLMEVLPTELSSTQHGWSKIGSLLAGFAVSAVVSWLVG 309
            LAAYALGASL+Q+GV G+Q+T FV+AFSAMTP+GILLG LIE DGEDD+ GA CVALAAGTFLYVSLMEVLP EL+ST++GWSK+GSL+ GF VSA V WLVG
Sbjct:  297 LAAYALGASLLQSGVYGKQVTLFVIAFSAMTPLGILLGALIEKDGEDDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLVLGFVVSAGVGWLVG 399          
BLAST of mRNA_M-pyrifera_M_contig11602.3330.1 vs. uniprot
Match: D7FLN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN7_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 5.440e-39
Identity = 66/103 (64.08%), Postives = 88/103 (85.44%), Query Frame = 1
Query:    1 LAAYALGASLMQTGVSGEQLTGFVVAFSAMTPIGILLGDLIENDGEDDTAGATCVALAAGTFLYVSLMEVLPTELSSTQHGWSKIGSLLAGFAVSAVVSWLVG 309
            +A YALGA+L+Q+GV  +Q+T +++AFSAMTP+GIL+G +I+ D ++D+ GA CVALAAGTFLYVSLMEVLP EL+ST++GWSK+GSL+ GF V+  V WLVG
Sbjct:  251 IAGYALGAALLQSGVHAKQVTLYILAFSAMTPLGILIGAIIQQDADNDSGGAVCVALAAGTFLYVSLMEVLPPELASTENGWSKMGSLVLGFLVATGVGWLVG 353          
BLAST of mRNA_M-pyrifera_M_contig11602.3330.1 vs. uniprot
Match: A0A8J4AZN8_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AZN8_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 2.330e-17
Identity = 42/99 (42.42%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 LAAYALGASLMQTGVSGEQLTGFVVAFSAMTPIGILLGDLIENDGEDDTAGATCVALAAGTFLYVSLMEVLPTELSSTQHGWSKIGSLLAGFAVSAVVS 297
            LAAYALGAS+M++G S E+    +  FS  TP+GI  G  +     + T+GA   ALA+GTFLYV+ MEV+P EL+  +H  +K+ + L G+++ ++++
Sbjct:  323 LAAYALGASIMESGASSERFWTVIGCFSLATPLGIFAGYGMSTRSANGTSGAALSALASGTFLYVAFMEVIPKELADGKHRMAKMAAFLLGYSLMSLLA 421          
BLAST of mRNA_M-pyrifera_M_contig11602.3330.1 vs. uniprot
Match: A0A8J4GAD1_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GAD1_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 3.340e-17
Identity = 42/99 (42.42%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 LAAYALGASLMQTGVSGEQLTGFVVAFSAMTPIGILLGDLIENDGEDDTAGATCVALAAGTFLYVSLMEVLPTELSSTQHGWSKIGSLLAGFAVSAVVS 297
            LAAYALGAS+M++G S E+    +  FS  TP+GI  G  +     + T+GA   ALA+GTFLYV+ MEV+P EL+  +H  +K+ + L G+++ ++++
Sbjct:  334 LAAYALGASIMESGASSERFWTVIGCFSLATPLGIFAGYGMSTRSANGTSGAALSALASGTFLYVAFMEVIPKELADGKHRLAKMAAFLLGYSLMSLLA 432          
BLAST of mRNA_M-pyrifera_M_contig11602.3330.1 vs. uniprot
Match: A0A3R7JXR2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JXR2_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.780e-16
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    1 LAAYALGASLMQTGVSGEQLTGFVVAFSAMTPIGILLGDLIENDGEDDTAGATCVALAAGTFLYVSLMEVLPTELSSTQHGWSKIGSLLAGFAVSAVVS 297
            LAA+AL    M    S  QL   V  FS MTP+GIL G L+ +      AG  C A A GTFL+VS+ME++P EL   ++   K  +L +G+A   V+S
Sbjct:  250 LAAFALALEFMHHNASRTQLLTTVAVFSLMTPVGILFGRLLVDSENSTPAGGICAAFAGGTFLFVSIMEIIPQELQDPRYQLEKCSALFSGYAAMGVLS 348          
BLAST of mRNA_M-pyrifera_M_contig11602.3330.1 vs. uniprot
Match: A0A835YCW4_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YCW4_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 2.060e-15
Identity = 41/99 (41.41%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 LAAYALGASLMQTGVSGEQLTGFVVAFSAMTPIGILLGDLIENDGEDDTAGATCVALAAGTFLYVSLMEVLPTELSSTQHGWSKIGSLLAGFAVSAVVS 297
            LAAYALGAS++++G S  +    + AFS  TPIGI  G  + ++  +  +GA   ALA+GTFLYV+ MEV+P EL+  +H   K+   L G+ + ++++
Sbjct:  335 LAAYALGASIVESGASSTRFWTVISAFSLATPIGIFSGFAMSSNANNSKSGAALSALASGTFLYVAFMEVIPKELADGKHRALKMLVFLIGYGLMSMLA 433          
BLAST of mRNA_M-pyrifera_M_contig11602.3330.1 vs. uniprot
Match: A0A7J6MSZ9_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MSZ9_PERCH)

HSP 1 Score: 79.7 bits (195), Expect = 3.340e-15
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    1 LAAYALGASLMQTGVSGEQLTGFVVAFSAMTPIGILLGDL-IENDGEDDTAG---ATCVALAAGTFLYVSLMEVLPTELSSTQHGWSKIGSLLAGFAVSAVVS-WL 303
            LAA+ALG S +++GVS ++     + F+A TPIG L GD+    +G   TA    A C ALAAGTFL VS ME++P   +S +  +SK+ ++L GF   AV++ W+
Sbjct:  930 LAAFALGCSFVESGVSDKRFVTLGLIFAAGTPIGALFGDIGYSAEGNKHTAAVFSAVCKALAAGTFLQVSSMEIIPQVFASAEGRFSKLSAVLVGFGAMAVLALWI 1035          
BLAST of mRNA_M-pyrifera_M_contig11602.3330.1 vs. uniprot
Match: A0A3R7GT88_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GT88_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.200e-15
Identity = 45/114 (39.47%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 LAAYALGASLMQTGVSGEQLTGFVVAFSAMTPIGILLGDLIENDGEDDTAGA-TCVALAAGTFLYVSLMEVLPTELSSTQHGW--------------SKIGSLLAGFAVSAVVS 297
            LAA+ALG+ L+Q+ +   Q+T ++V FS M+ IGI++G +I  D  +D+A A  CVALA+GTF+YV++MEV+P E     HG                K  +L+AG+A+  +++
Sbjct:  195 LAAFALGSGLVQSAMPVAQVTLYMVVFSFMSIIGIIIGWIIAADSSEDSAAAGICVALASGTFIYVAVMEVIPQEFPRHSHGGHGDHGHQPKNTLTIQKTIALVAGYAIFGLLA 308          
BLAST of mRNA_M-pyrifera_M_contig11602.3330.1 vs. uniprot
Match: C5KL75_PERM5 (Uncharacterized protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KL75_PERM5)

HSP 1 Score: 78.6 bits (192), Expect = 6.030e-15
Identity = 44/106 (41.51%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 LAAYALGASLMQTGVSGEQLTGFVVAFSAMTPIGILLGDLIENDGEDDTAGA----TCVALAAGTFLYVSLMEVLPTELSSTQHGWSKIGSLLAGFAVSAVVS-WL 303
            LAA+ALG SL+++ VSG +   + + F+A TP+G LLG++  + G+   A A    TC ALA+GTFL VS ME++P   +S +  +SK+ ++L GF   A ++ W+
Sbjct:  274 LAAFALGCSLVESTVSGRRFFVYSLIFAAGTPVGALLGNIGISSGKSVHAAAVFTATCKALASGTFLQVSSMEIIPQVFASAEGRFSKLTAILVGFGAMATLAVWI 379          
BLAST of mRNA_M-pyrifera_M_contig11602.3330.1 vs. uniprot
Match: A0A150GMX7_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GMX7_GONPE)

HSP 1 Score: 78.2 bits (191), Expect = 9.460e-15
Identity = 41/99 (41.41%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 LAAYALGASLMQTGVSGEQLTGFVVAFSAMTPIGILLGDLIENDGEDDTAGATCVALAAGTFLYVSLMEVLPTELSSTQHGWSKIGSLLAGFAVSAVVS 297
            LAAYALGAS++++G S  +    +  FS  TPIGI  G  + +      +GA   ALA+GTFLYV+ MEV+P EL+  +H  +K+G+ L G+ + ++++
Sbjct:  314 LAAYALGASIVESGASSNRFWTVIGCFSMATPIGIFAGYGMSS-AASSKSGAALSALASGTFLYVAFMEVIPKELADGRHRAAKMGAFLLGYGLMSLLA 411          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11602.3330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLN8_ECTSI7.550e-4677.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FLN7_ECTSI5.440e-3964.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J4AZN8_9CHLO2.330e-1742.42Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A8J4GAD1_9CHLO3.340e-1742.42Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A3R7JXR2_9STRA2.780e-1642.42Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A835YCW4_9CHLO2.060e-1541.41Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7J6MSZ9_PERCH3.340e-1543.40Uncharacterized protein n=1 Tax=Perkinsus chesapea... [more]
A0A3R7GT88_9STRA5.200e-1539.47Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
C5KL75_PERM56.030e-1541.51Uncharacterized protein n=1 Tax=Perkinsus marinus ... [more]
A0A150GMX7_GONPE9.460e-1541.41Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11602contigM-pyrifera_M_contig11602:995..1306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue5.3e-33
Seed eggNOG ortholog2880.D7FLN8
KEGG koko:K14709
KEGG TC2.A.5.1,2.A.5.3,2.A.5.6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsKOG1558@1,KOG1558@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size312
Cds size282
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.1908805-UTR-M-pyrifera_M_contig11602:994..10241622815677.1908805-UTR-M-pyrifera_M_contig11602:994..1024Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11602 995..1024 +
1692277517.280151-UTR-M-pyrifera_M_contig11602:994..10241692277517.280151-UTR-M-pyrifera_M_contig11602:994..1024Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11602 995..1024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.2047987-CDS-M-pyrifera_M_contig11602:1024..13061622815677.2047987-CDS-M-pyrifera_M_contig11602:1024..1306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11602 1025..1306 +
1692277517.2925851-CDS-M-pyrifera_M_contig11602:1024..13061692277517.2925851-CDS-M-pyrifera_M_contig11602:1024..1306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11602 1025..1306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11602.3330.1prot_M-pyrifera_M_contig11602.3330.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11602 1025..1306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11602.3330.1

>prot_M-pyrifera_M_contig11602.3330.1 ID=prot_M-pyrifera_M_contig11602.3330.1|Name=mRNA_M-pyrifera_M_contig11602.3330.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
MQTGVSGEQLTGFVVAFSAMTPIGILLGDLIENDGEDDTAGATCVALAAG
TFLYVSLMEVLPTELSSTQHGWSKIGSLLAGFAVSAVVSWLVG*
back to top

mRNA from alignment at M-pyrifera_M_contig11602:995..1306+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11602.3330.1 ID=mRNA_M-pyrifera_M_contig11602.3330.1|Name=mRNA_M-pyrifera_M_contig11602.3330.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig11602:995..1306+ (Macrocystis pyrifera P11B4 male)
TTGGCTGCGTACGCCCTCGGAGCATCGCTCATGCAAACCGGCGTTTCGGG GGAACAGCTCACAGGATTCGTCGTCGCTTTTTCGGCGATGACGCCGATAG GGATTCTGCTGGGGGATTTGATAGAAAATGACGGAGAGGATGACACGGCG GGAGCGACGTGCGTCGCGCTAGCCGCAGGAACTTTCCTTTATGTTTCTTT GATGGAGGTTCTCCCGACGGAGTTGAGTTCCACCCAGCATGGGTGGTCCA AGATCGGATCTTTGCTCGCGGGTTTCGCTGTCTCGGCAGTCGTTAGTTGG TTGGTGGGATAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11602:995..1306+

>mRNA_M-pyrifera_M_contig11602.3330.1 ID=mRNA_M-pyrifera_M_contig11602.3330.1|Name=mRNA_M-pyrifera_M_contig11602.3330.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig11602:995..1306+ (Macrocystis pyrifera P11B4 male)
ATGCAAACCGGCGTTTCGGGGGAACAGCTCACAGGATTCGTCGTCGCTTT
TTCGGCGATGACGCCGATAGGGATTCTGCTGGGGGATTTGATAGAAAATG
ACGGAGAGGATGACACGGCGGGAGCGACGTGCGTCGCGCTAGCCGCAGGA
ACTTTCCTTTATGTTTCTTTGATGGAGGTTCTCCCGACGGAGTTGAGTTC
CACCCAGCATGGGTGGTCCAAGATCGGATCTTTGCTCGCGGGTTTCGCTG
TCTCGGCAGTCGTTAGTTGGTTGGTGGGATAGATGCAAACCGGCGTTTCG
GGGGAACAGCTCACAGGATTCGTCGTCGCTTTTTCGGCGATGACGCCGAT
AGGGATTCTGCTGGGGGATTTGATAGAAAATGACGGAGAGGATGACACGG
CGGGAGCGACGTGCGTCGCGCTAGCCGCAGGAACTTTCCTTTATGTTTCT
TTGATGGAGGTTCTCCCGACGGAGTTGAGTTCCACCCAGCATGGGTGGTC
CAAGATCGGATCTTTGCTCGCGGGTTTCGCTGTCTCGGCAGTCGTTAGTT
GGTTGGTGGGATAG
back to top