mRNA_M-pyrifera_M_contig116.3324.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116.3324.1
Unique NamemRNA_M-pyrifera_M_contig116.3324.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A6H5KSW5_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW5_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 5.910e-44
Identity = 72/90 (80.00%), Postives = 83/90 (92.22%), Query Frame = 1
Query:    1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKASLVEAVLQQSLLGGGGMDLMYPDDGGFYDQDDLQWRVML 270
            RAQALA+VVGNPNLL GE+YW++LL+FC++NDAIRGC CPAL+   RED+ASLV+AVLQQSLLGGGGMDLMYP+ G FYDQDDLQWRVML
Sbjct:  852 RAQALAVVVGNPNLLAGEEYWKELLMFCKENDAIRGCACPALEVGGREDEASLVDAVLQQSLLGGGGMDLMYPEHGDFYDQDDLQWRVML 941          
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: D7FRN2_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN2_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 6.820e-42
Identity = 69/87 (79.31%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKASLVEAVLQQSLLGGGGMDLMYPDDGGFYDQDDLQWR 261
            RAQALA+VVGNPNLL GE+YW++LL+FC++NDAIRGC CPAL+   RED+ASLV+AVLQQSLLGGGGMDLMYP+ G FYDQDDLQWR
Sbjct: 1154 RAQALAVVVGNPNLLAGEEYWKELLMFCKENDAIRGCACPALEVGGREDEASLVDAVLQQSLLGGGGMDLMYPEHGDFYDQDDLQWR 1240          
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A7S3SUN1_EMIHU (RNA helicase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SUN1_EMIHU)

HSP 1 Score: 76.3 bits (186), Expect = 1.720e-13
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 1
Query:    1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKAS------LVEAVLQQSLLGGGGMDLMYPD-------DGGFYDQDDLQWRVML 270
            RA+AL +VVG+PN L+ +  WR+LL +  +ND+ RGCP P L  E  ED+AS      L + V   S+LG G    M+P        DG + + DD  WRVML
Sbjct:  869 RARALLVVVGDPNALIDDPSWRELLRYAVENDSYRGCPHP-LMMEGTEDEASENTMAQLADHVAN-SVLGSGNAVAMFPTLAGEATYDGAYDESDDQPWRVML 969          
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A7S0LAB4_9EUKA (RNA helicase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LAB4_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 1.400e-12
Identity = 40/97 (41.24%), Postives = 53/97 (54.64%), Query Frame = 1
Query:    1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKASLVEAVLQQSLLGGGGMDLMYPDDGGFYD-------QDDLQWRVML 270
            RA+AL +VVG+PN L  + YWR+LL +  ++DA RGC  P L   + E+  S+  A L Q  LG G    M+P    F +        DD  WRVML
Sbjct:  451 RAKALLLVVGDPNALYDDQYWRELLQYAVEHDAYRGCAHPLLVEGAEEEDVSIRLAQLAQQTLGLGDACRMFPRFSSFLEGGTDYESYDDQPWRVML 547          
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A7S3VY91_9SPIT (RNA helicase (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3VY91_9SPIT)

HSP 1 Score: 69.3 bits (168), Expect = 3.500e-12
Identity = 36/100 (36.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:    1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPAL----QAESREDKASLVEAVLQQSLLGGGGMDLMYPD------DGGFYDQDDLQWRVML 270
            RA+AL +VVG+PN LV +  W +LL +  +N A RGCP P L    + +  +D  + +   + +++LG G    M+P       +G + + DD  WRVML
Sbjct:   59 RAKALLVVVGDPNALVDDPSWCELLRYAVENGAYRGCPHPLLIEGAEEDDYDDTLANIADQMAKTVLGAGNAMSMFPSLTDTLYEGHYNESDDQPWRVML 158          
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A7S4C5E9_CHRCT (RNA helicase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C5E9_CHRCT)

HSP 1 Score: 68.9 bits (167), Expect = 1.170e-11
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 1
Query:    1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKASLVE--AVLQQSLLGGGGMDLMYPD---------DGGFYDQ-DDLQWRVML 270
            RA+AL ++VG+PN LV +  WR+LL +  +NDA RGC  P L   + +  A +    A L +  LG G +  M+P          DG  YD  DD  WRVML
Sbjct:  105 RAKALLLIVGDPNALVEDAMWRELLRYAVENDAYRGCAHPLLPDGADDADAGVTARLAALARRALGAGDVAKMFPSFSSFLPQCADGDEYDGCDDQPWRVML 206          
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A7S0NN57_9EUKA (RNA helicase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NN57_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 4.430e-10
Identity = 38/100 (38.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:    1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKASLVEAV-LQQSLLGGGGMDLMYPD---------DGGFYDQDDLQWRVML 270
            RA+AL +VVG+PN L  + YWR+LL +  +++A RGC  P L   + +D  S+     L Q  LG G    M+P          D  +   DD  WRVML
Sbjct:  280 RAKALLLVVGDPNALFDDQYWRELLKYAVEHNAYRGCAHPLLVEGADDDDHSVSRLTQLAQQTLGFGEASRMFPAFSSFLAGGADNDYEAYDDQPWRVML 379          
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: R1BX97_EMIHU (RNA helicase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BX97_EMIHU)

HSP 1 Score: 58.2 bits (139), Expect = 3.210e-7
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDKASL 159
            RA+AL +VVG+PN L+ +  WR+LL +  +ND+ RGCP P L  E  ED+A L
Sbjct:  339 RARALLVVVGDPNALIDDPSWRELLRYAVENDSYRGCPHP-LMMEGTEDEARL 390          
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A1W4W200_DROFC (RNA helicase n=1 Tax=Drosophila ficusphila TaxID=30025 RepID=A0A1W4W200_DROFC)

HSP 1 Score: 55.8 bits (133), Expect = 2.310e-6
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCP-ALQAESREDKASL 159
            RA+A+ IV GNP+LL  +D WR L+LFC +N+A  GC  P ++Q +  ED   L
Sbjct: 1123 RARAMMIVFGNPHLLAVDDCWRQLILFCANNNAYFGCELPESIQNQEEEDPIRL 1176          
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Match: A0A482VW40_9CUCU (RNA helicase (Fragment) n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VW40_9CUCU)

HSP 1 Score: 55.5 bits (132), Expect = 3.050e-6
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1
Query:    1 RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRG 108
            RA+AL IVVGNPN+L  + YWR L+ +C+DN+A+RG
Sbjct:  757 RAKALQIVVGNPNILQHDKYWRSLITYCKDNNAMRG 792          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116.3324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KSW5_9PHAE5.910e-4480.00RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FRN2_ECTSI6.820e-4279.31RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A7S3SUN1_EMIHU1.720e-1342.72RNA helicase n=1 Tax=Emiliania huxleyi TaxID=2903 ... [more]
A0A7S0LAB4_9EUKA1.400e-1241.24RNA helicase n=1 Tax=Coccolithus braarudii TaxID=2... [more]
A0A7S3VY91_9SPIT3.500e-1236.00RNA helicase (Fragment) n=1 Tax=Strombidinopsis ac... [more]
A0A7S4C5E9_CHRCT1.170e-1140.20RNA helicase n=1 Tax=Chrysotila carterae TaxID=132... [more]
A0A7S0NN57_9EUKA4.430e-1038.00RNA helicase n=1 Tax=Calcidiscus leptoporus TaxID=... [more]
R1BX97_EMIHU3.210e-750.94RNA helicase n=1 Tax=Emiliania huxleyi TaxID=2903 ... [more]
A0A1W4W200_DROFC2.310e-648.15RNA helicase n=1 Tax=Drosophila ficusphila TaxID=3... [more]
A0A482VW40_9CUCU3.050e-661.11RNA helicase (Fragment) n=1 Tax=Asbolus verrucosus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116contigM-pyrifera_M_contig116:20780..21880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue1.7e-36
Seed eggNOG ortholog2880.D7FRN2
KEGG rclassRC00379,RC00444,RC00445
KEGG koko:K01756,ko:K13983,ko:K18422
KEGG ReactionR01083,R04559
KEGG Pathwayko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130
KEGG ModuleM00048,M00049
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG1112@1,KOG1804@2759
EC3.6.4.13,4.3.2.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03036
Exons2
Model size410
Cds size273
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116.3324.1prot_M-pyrifera_M_contig116.3324.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116 20780..21743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.650348-CDS-M-pyrifera_M_contig116:20779..209081622815676.650348-CDS-M-pyrifera_M_contig116:20779..20908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116 20780..20908 +
1692277516.9156651-CDS-M-pyrifera_M_contig116:20779..209081692277516.9156651-CDS-M-pyrifera_M_contig116:20779..20908Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116 20780..20908 +
1622815676.6615455-CDS-M-pyrifera_M_contig116:21599..217431622815676.6615455-CDS-M-pyrifera_M_contig116:21599..21743Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116 21600..21743 +
1692277516.9283214-CDS-M-pyrifera_M_contig116:21599..217431692277516.9283214-CDS-M-pyrifera_M_contig116:21599..21743Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116 21600..21743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.6818397-UTR-M-pyrifera_M_contig116:21743..218801622815676.6818397-UTR-M-pyrifera_M_contig116:21743..21880Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116 21744..21880 +
1692277516.9367397-UTR-M-pyrifera_M_contig116:21743..218801692277516.9367397-UTR-M-pyrifera_M_contig116:21743..21880Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116 21744..21880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116.3324.1

>prot_M-pyrifera_M_contig116.3324.1 ID=prot_M-pyrifera_M_contig116.3324.1|Name=mRNA_M-pyrifera_M_contig116.3324.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
RAQALAIVVGNPNLLVGEDYWRDLLLFCRDNDAIRGCPCPALQAESREDK
ASLVEAVLQQSLLGGGGMDLMYPDDGGFYDQDDLQWRVML*
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mRNA from alignment at M-pyrifera_M_contig116:20780..21880+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116.3324.1 ID=mRNA_M-pyrifera_M_contig116.3324.1|Name=mRNA_M-pyrifera_M_contig116.3324.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at M-pyrifera_M_contig116:20780..21880+ (Macrocystis pyrifera P11B4 male)
CGAGCTCAGGCGCTGGCAATAGTAGTCGGCAACCCTAACCTGTTGGTGGG CGAGGACTACTGGAGGGACTTGCTCCTCTTCTGTAGAGACAACGACGCCA TACGGGGCTGCCCCTGCCCAGCTCTTCAGGTACGCACAACATGCCGGCGG CCTCATGTATTCCTGGTATCCCTGGTATACTATCAGCTTAAAGGTGAAGC CCCTGGTCACACCATACGGTTTTCAAGGGTGGTATATAGCGTTAACCCGC TACCGAAGTGCACGAGGTCTTGCTTGGTGTCATGTAGAGGCAAGGACAGA ACCCTCCACGGCGAATTGGAGAACCAGAGAATAGTTCGGTAGGTCTACTC ACACACTACGTGCACGCTCTTGCGCACTGGTCTCATTGTTGTTCCGGATA TCACAGTTTGAGGATGATCCTCGGGTTGAATGAAGGCGGAGATGTCTTCT GTTGTGGCCCTGTTGGCCCTTGTGTGGCGATCGTTCCATGAACCGTTCGA ATTATTTCCTCCACATGAAACTAGGATAGCATGGATTGTCGTAGAAGGGT GATATTTTTGTAAGAGTGGCCGGTAGGTGTCCGCGAGTGTTTCTGCTTCC TCACGGCGGTGTGAGTCCCGCGTGCATACGTCAAATTATTTACTCTCCCG TCGTGCAAAGCTTGTTTTCCTGCCTGCGGCCGTGTCACCTGCACCAACAG TATGCCAACCTCGGGGCGTTCCGCTTGCCATTAAGGTTTCCACTCAATTC GCACTTCGCACATCCTTGTCTCGGTACTCCAATAAATCTTGGATTATTGA CGCCTTTGGACCTACGGCAGGCGGAGAGCAGAGAGGACAAGGCCAGCCTA GTGGAGGCCGTGCTCCAACAGAGCTTGCTTGGGGGAGGGGGCATGGATCT CATGTACCCGGACGACGGAGGCTTTTACGACCAGGATGACTTGCAGTGGA GAGTCATGCTCTGATTTTAGTCACTTAGCGGCTGTAGTCATAGTAGTACT CATGGAGCGTTAGGTGCTGTCTTGAGAGTTTTTTTTAAAGGCAACTGGTC CGTCGTGGGCGATTGGAAGGCTCGTGAGAGTAATTTCGACTTTTACGTAT G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116:20780..21880+

>mRNA_M-pyrifera_M_contig116.3324.1 ID=mRNA_M-pyrifera_M_contig116.3324.1|Name=mRNA_M-pyrifera_M_contig116.3324.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig116:20780..21880+ (Macrocystis pyrifera P11B4 male)
CGAGCTCAGGCGCTGGCAATAGTAGTCGGCAACCCTAACCTGTTGGTGGG
CGAGGACTACTGGAGGGACTTGCTCCTCTTCTGTAGAGACAACGACGCCA
TACGGGGCTGCCCCTGCCCAGCTCTTCAGCGAGCTCAGGCGCTGGCAATA
GTAGTCGGCAACCCTAACCTGTTGGTGGGCGAGGACTACTGGAGGGACTT
GCTCCTCTTCTGTAGAGACAACGACGCCATACGGGGCTGCCCCTGCCCAG
CTCTTCAGGCGGAGAGCAGAGAGGACAAGGCCAGCCTAGTGGAGGCCGTG
CTCCAACAGAGCTTGCTTGGGGGAGGGGGCATGGATCTCATGTACCCGGA
CGACGGAGGCTTTTACGACCAGGATGACTTGCAGTGGAGAGTCATGCTCT
GAGCGGAGAGCAGAGAGGACAAGGCCAGCCTAGTGGAGGCCGTGCTCCAA
CAGAGCTTGCTTGGGGGAGGGGGCATGGATCTCATGTACCCGGACGACGG
AGGCTTTTACGACCAGGATGACTTGCAGTGGAGAGTCATGCTCTGA
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