mRNA_M-pyrifera_M_contig115994.3322.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115994.3322.1
Unique NamemRNA_M-pyrifera_M_contig115994.3322.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: D2V0F2_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V0F2_NAEGR)

HSP 1 Score: 90.5 bits (223), Expect = 3.500e-20
Identity = 42/72 (58.33%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    7 QKSSTLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
            ++  T+D   +DLGLVL GSGK VL GV G ++HG++TAVMG SGAGK+TF+TTL+ +A YG Q G++F+NG
Sbjct:   32 EEQFTVDIGFQDLGLVLRGSGKKVLDGVTGEIKHGKLTAVMGLSGAGKSTFITTLSNRAYYGAQVGKVFVNG 103          
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: A0A6A5CAB0_NAEFO (ABC transporter domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5CAB0_NAEFO)

HSP 1 Score: 90.9 bits (224), Expect = 1.220e-19
Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    7 QKSSTLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
            ++  T+D   +DLGLVL GSGK VL+GV G ++HG++TAVMG SGAGK+TF+TTL+ +A YG Q G++F+NG
Sbjct: 1034 EEQFTVDIGFQDLGLVLRGSGKKVLNGVTGEIKHGKLTAVMGLSGAGKSTFITTLSNRAYYGTQVGKVFVNG 1105          
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: A0A7S1CQC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQC7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.600e-19
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 LTQKSSTLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKAS-YGKQTGRIFING 222
            L  K+ T+DF  RDLGL L  SG+ V++GV+GR+ H R+TA+MGPSGAGKT+FL+ L+G+AS YG  TG + ING
Sbjct:   44 LGPKAFTIDFTFRDLGLKLIKSGRSVVAGVSGRILHSRLTAIMGPSGAGKTSFLSALSGRASSYGVTTGSVRING 118          
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: D2VK18_NAEGR (Abc transporter aaa ATPase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VK18_NAEGR)

HSP 1 Score: 88.2 bits (217), Expect = 1.070e-18
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 1
Query:   19 TLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
            T+D E +DLGL+L GSGK VL GV G++ HG++TAVMG SG GK+TF+TTLA +A YG   G I+ING
Sbjct:  899 TVDIEFKDLGLILRGSGKKVLDGVTGKIEHGQLTAVMGLSGCGKSTFITTLANRAYYGTTVGSIYING 966          
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: UPI001CFE75E6 (uncharacterized protein n=2 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFE75E6)

HSP 1 Score: 87.4 bits (215), Expect = 1.980e-18
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    7 QKSSTLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
            Q + T+D    +LGL+L GSGK VL GV G ++HG++TAVMG SG GK+TF+TTLA +A YG Q G++F+NG
Sbjct:  162 QDNFTVDIGFENLGLILRGSGKKVLHGVTGEIKHGQLTAVMGLSGCGKSTFITTLANRAYYGTQVGKVFVNG 233          
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: A0A6A5BS35_NAEFO (ABC transporter domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BS35_NAEFO)

HSP 1 Score: 86.7 bits (213), Expect = 3.740e-18
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    7 QKSSTLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
            Q + T+D    +LGL+L GSGK VL GV G ++HG++TAVMG SG GK+TF+TTLA +A YG Q G++F+NG
Sbjct: 1016 QDNFTVDIGFDNLGLILRGSGKKVLHGVTGEIKHGQLTAVMGLSGCGKSTFITTLANRAYYGTQVGKVFVNG 1087          
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: D2VN79_NAEGR (Abc transporter family protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VN79_NAEGR)

HSP 1 Score: 85.5 bits (210), Expect = 9.530e-18
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 1
Query:   19 TLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
            T+D   +DLGL L GSGK VL  V G ++HG++TAVMG SGAGK+TF+TTL+ +A YG Q G++F+NG
Sbjct: 1095 TVDIGFKDLGLTLKGSGKRVLDSVTGEIKHGKLTAVMGLSGAGKSTFITTLSNRAYYGTQLGQVFVNG 1162          
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: A7T6N0_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7T6N0_NEMVE)

HSP 1 Score: 85.1 bits (209), Expect = 1.240e-17
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 LTQKSSTLDFEVRDLGLVLN-GSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
            +  K+ T+D   +DL L LN G+ K VL GV G+++ G VTAVMGPSGAGKTTFL TL+GKA YG + G IFING
Sbjct:  448 IVPKNYTVDITFKDLNLKLNSGTKKTVLMGVTGKIKSGEVTAVMGPSGAGKTTFLNTLSGKAYYGTRGGEIFING 522          
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: UPI0013905EC1 (ABC transporter G family member 24 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013905EC1)

HSP 1 Score: 85.1 bits (209), Expect = 1.290e-17
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 LTQKSSTLDFEVRDLGLVLN-GSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
            +  K+ T+D   +DL L LN G+ K VL GV G+++ G VTAVMGPSGAGKTTFL TL+GKA YG + G IFING
Sbjct:  355 IVPKNYTVDITFKDLNLKLNSGTKKTVLMGVTGKIKSGEVTAVMGPSGAGKTTFLNTLSGKAYYGTRGGEIFING 429          
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Match: UPI001F03C264 (LOW QUALITY PROTEIN: ABC transporter G family member 28-like n=4 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03C264)

HSP 1 Score: 83.2 bits (204), Expect = 6.110e-17
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   19 TLDFEVRDLGLVL-NGSGKVVLSGVNGRLRHGRVTAVMGPSGAGKTTFLTTLAGKASYGKQTGRIFING 222
            T+D    +LGL L +G+ KVVL GV G +R G VTAVMGPSGAGKTTFL TL+GKA YG +TG+I  NG
Sbjct:  319 TIDISFENLGLTLKSGNRKVVLQGVTGHVRSGEVTAVMGPSGAGKTTFLNTLSGKAYYGIRTGKILFNG 387          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115994.3322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D2V0F2_NAEGR3.500e-2058.33Predicted protein (Fragment) n=1 Tax=Naegleria gru... [more]
A0A6A5CAB0_NAEFO1.220e-1958.33ABC transporter domain-containing protein n=2 Tax=... [more]
A0A7S1CQC7_9STRA4.600e-1958.67Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
D2VK18_NAEGR1.070e-1861.76Abc transporter aaa ATPase n=1 Tax=Naegleria grube... [more]
UPI001CFE75E61.980e-1856.94uncharacterized protein n=2 Tax=Naegleria lovanien... [more]
A0A6A5BS35_NAEFO3.740e-1856.94ABC transporter domain-containing protein n=1 Tax=... [more]
D2VN79_NAEGR9.530e-1858.82Abc transporter family protein n=1 Tax=Naegleria g... [more]
A7T6N0_NEMVE1.240e-1760.00Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
UPI0013905EC11.290e-1760.00ABC transporter G family member 24 n=1 Tax=Nematos... [more]
UPI001F03C2646.110e-1763.77LOW QUALITY PROTEIN: ABC transporter G family memb... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115994contigM-pyrifera_M_contig115994:340..561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue3.5e-16
Seed eggNOG ortholog5762.XP_002682451.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.563286-CDS-M-pyrifera_M_contig115994:339..5611622815676.563286-CDS-M-pyrifera_M_contig115994:339..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115994 340..561 +
1692277516.8892171-CDS-M-pyrifera_M_contig115994:339..5611692277516.8892171-CDS-M-pyrifera_M_contig115994:339..561Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115994 340..561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115994.3322.1prot_M-pyrifera_M_contig115994.3322.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115994 340..561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115994.3322.1

>prot_M-pyrifera_M_contig115994.3322.1 ID=prot_M-pyrifera_M_contig115994.3322.1|Name=mRNA_M-pyrifera_M_contig115994.3322.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
LTQKSSTLDFEVRDLGLVLNGSGKVVLSGVNGRLRHGRVTAVMGPSGAGK
TTFLTTLAGKASYGKQTGRIFING
back to top

mRNA from alignment at M-pyrifera_M_contig115994:340..561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115994.3322.1 ID=mRNA_M-pyrifera_M_contig115994.3322.1|Name=mRNA_M-pyrifera_M_contig115994.3322.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig115994:340..561+ (Macrocystis pyrifera P11B4 male)
CTGACGCAGAAGAGCTCGACGCTGGACTTTGAGGTTCGCGACTTGGGGCT GGTGCTGAACGGCAGCGGCAAGGTGGTGTTGTCCGGGGTGAACGGTCGCC TTCGGCATGGTCGGGTGACTGCTGTGATGGGTCCGTCTGGCGCGGGCAAG ACGACGTTCCTGACCACGCTGGCGGGCAAAGCTTCGTACGGCAAGCAGAC GGGGCGTATTTTCATCAACGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig115994:340..561+

>mRNA_M-pyrifera_M_contig115994.3322.1 ID=mRNA_M-pyrifera_M_contig115994.3322.1|Name=mRNA_M-pyrifera_M_contig115994.3322.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig115994:340..561+ (Macrocystis pyrifera P11B4 male)
CTGACGCAGAAGAGCTCGACGCTGGACTTTGAGGTTCGCGACTTGGGGCT
GGTGCTGAACGGCAGCGGCAAGGTGGTGTTGTCCGGGGTGAACGGTCGCC
TTCGGCATGGTCGGGTGACTGCTGTGATGGGTCCGTCTGGCGCGGGCAAG
ACGACGTTCCTGACCACGCTGGCGGGCAAAGCTTCGTACGGCAAGCAGAC
GGGGCGTATTTTCATCAACGGCCTGACGCAGAAGAGCTCGACGCTGGACT
TTGAGGTTCGCGACTTGGGGCTGGTGCTGAACGGCAGCGGCAAGGTGGTG
TTGTCCGGGGTGAACGGTCGCCTTCGGCATGGTCGGGTGACTGCTGTGAT
GGGTCCGTCTGGCGCGGGCAAGACGACGTTCCTGACCACGCTGGCGGGCA
AAGCTTCGTACGGCAAGCAGACGGGGCGTATTTTCATCAACGGC
back to top