mRNA_M-pyrifera_M_contig115982.3317.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115982.3317.1
Unique NamemRNA_M-pyrifera_M_contig115982.3317.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115982.3317.1 vs. uniprot
Match: A0A523JDY1_9DELT (GNAT family N-acetyltransferase n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523JDY1_9DELT)

HSP 1 Score: 58.5 bits (140), Expect = 2.400e-7
Identity = 43/137 (31.39%), Postives = 69/137 (50.36%), Query Frame = 1 
Query:    4 VRVFLRAVHC-GEIVAKAGGIGEVCVAESQRRRGVATQVLEHAIAYMKANAFSISFLHAGGAAKLYKTLGFQ--PRADRVSIIPLQYLRSVKDTHVDQFTIQTATWEDSETEALSQLYTEFMKNFDGCAERGLEYWR 405
            V++F R +   GE VA  GGIG V  A++ R RG+A++++ HAI  M+    +++ L  G     Y+ LGF+  P+A R+   P        +  V  F       + ++ EA+S LY  +   F+ C  R   YW+
Sbjct:   59 VQIFSRRIRLRGETVAL-GGIGSVATADAYRERGLASELMRHAIREMEQRGMALALLFTG-LFDFYQRLGFRSVPQARRLLHRPHPPAEPALELSVRPF-------QQADLEAISALYESYSAAFEICTVRDASYWQ 186
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BLAST of mRNA_M-pyrifera_M_contig115982.3317.1 vs. uniprot
Match: A0A6B2JLS5_9RHOB (GNAT family N-acetyltransferase n=1 Tax=Pseudoroseicyclus tamaricis TaxID=2705421 RepID=A0A6B2JLS5_9RHOB)

HSP 1 Score: 52.0 bits (123), Expect = 1.990e-5
Identity = 31/88 (35.23%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:   16 LRAVHCGEIVAKAGGIGEVCVAESQRRRGVATQVLEHAIAYMKANAFSISFLHAGGAAKLYKTLGFQPRADRVSIIPLQYLRSVKDTH 279
            LRAV  G+ +     +GEVC     R RG+A+ +L+ AIA  KA+      L   G AKLY   GF+P    + ++ +   RS++  H
Sbjct:   62 LRAVRLGDDLVDIATLGEVCTHPEARGRGIASALLQEAIAEAKASPARFFLLF--GVAKLYPAAGFRPITQNLRLLGMDGARSLRMVH 147
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115982.3317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A523JDY1_9DELT2.400e-731.39GNAT family N-acetyltransferase n=2 Tax=Deltaprote... [more]
A0A6B2JLS5_9RHOB1.990e-535.23GNAT family N-acetyltransferase n=1 Tax=Pseudorose... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115982contigM-pyrifera_M_contig115982:75..562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue5.2e-16
Seed eggNOG ortholog45157.CMG090CT
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Acetyltransferase (GNAT) domain
EggNOG OGs2CZ21@1,2S7Y4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.3096054-CDS-M-pyrifera_M_contig115982:74..1701622815676.3096054-CDS-M-pyrifera_M_contig115982:74..170Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115982 75..170 -
1692277516.7781196-CDS-M-pyrifera_M_contig115982:74..1701692277516.7781196-CDS-M-pyrifera_M_contig115982:74..170Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115982 75..170 -
1622815676.3219047-CDS-M-pyrifera_M_contig115982:232..5621622815676.3219047-CDS-M-pyrifera_M_contig115982:232..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115982 233..562 -
1692277516.7954652-CDS-M-pyrifera_M_contig115982:232..5621692277516.7954652-CDS-M-pyrifera_M_contig115982:232..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115982 233..562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115982.3317.1prot_M-pyrifera_M_contig115982.3317.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115982 75..562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115982.3317.1

>prot_M-pyrifera_M_contig115982.3317.1 ID=prot_M-pyrifera_M_contig115982.3317.1|Name=mRNA_M-pyrifera_M_contig115982.3317.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
SVRVFLRAVHCGEIVAKAGGIGEVCVAESQRRRGVATQVLEHAIAYMKAN
AFSISFLHAGGAAKLYKTLGFQPRADRVSIIPLQYLRSVKDTHVDQFTIQ
TATWEDSETEALSQLYTEFMKNFDGCAERGLEYWRTWARTES
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mRNA from alignment at M-pyrifera_M_contig115982:75..562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115982.3317.1 ID=mRNA_M-pyrifera_M_contig115982.3317.1|Name=mRNA_M-pyrifera_M_contig115982.3317.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=488bp|location=Sequence derived from alignment at M-pyrifera_M_contig115982:75..562- (Macrocystis pyrifera P11B4 male)
TCCGTTCGAGTGTTCTTGAGGGCTGTGCATTGTGGAGAGATTGTCGCTAA
GGCAGGCGGCATCGGAGAGGTGTGCGTGGCCGAGAGCCAGAGGCGAAGAG
GAGTGGCAACGCAGGTTTTAGAGCACGCGATCGCTTACATGAAGGCCAAC
GCCTTCAGCATATCGTTCCTGCATGCTGGGGGTGCTGCCAAGCTATACAA
GACGCTGGGCTTCCAGCCTCGCGCTGACAGGGTTTCTATCATTCCCTTGC
AATACCTTAGAAGTGTCAAGGATACCCACGTGGACCAGTTCACCATTCAG
ACTGCTACGTGGGAGGACAGTGAGACTGAGGTATTGCATTGCTTCTTGGC
TCTCTCCTCTCCAGGTTGCAGTGTCTGACCTCAGTTGACTAGGCTTTGTC
CCAGCTCTACACCGAATTCATGAAGAATTTCGATGGCTGTGCAGAGAGGG
GCCTGGAGTACTGGCGTACCTGGGCTCGGACAGAGTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115982:75..562-

>mRNA_M-pyrifera_M_contig115982.3317.1 ID=mRNA_M-pyrifera_M_contig115982.3317.1|Name=mRNA_M-pyrifera_M_contig115982.3317.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig115982:75..562- (Macrocystis pyrifera P11B4 male)
TCCGTTCGAGTGTTCTTGAGGGCTGTGCATTGTGGAGAGATTGTCGCTAA
GGCAGGCGGCATCGGAGAGGTGTGCGTGGCCGAGAGCCAGAGGCGAAGAG
GAGTGGCAACGCAGGTTTTAGAGCACGCGATCGCTTACATGAAGGCCAAC
GCCTTCAGCATATCGTTCCTGCATGCTGGGGGTGCTGCCAAGCTATACAA
GACGCTGGGCTTCCAGCCTCGCGCTGACAGGGTTTCTATCATTCCCTTGC
AATACCTTAGAAGTGTCAAGGATACCCACGTGGACCAGTTCACCATTCAG
ACTGCTACGTGGGAGGACAGTGAGACTGAGTCCGTTCGAGTGTTCTTGAG
GGCTGTGCATTGTGGAGAGATTGTCGCTAAGGCAGGCGGCATCGGAGAGG
TGTGCGTGGCCGAGAGCCAGAGGCGAAGAGGAGTGGCAACGCAGGTTTTA
GAGCACGCGATCGCTTACATGAAGGCCAACGCCTTCAGCATATCGTTCCT
GCATGCTGGGGGTGCTGCCAAGCTATACAAGACGCTGGGCTTCCAGCCTC
GCGCTGACAGGGTTTCTATCATTCCCTTGCAATACCTTAGAAGTGTCAAG
GATACCCACGTGGACCAGTTCACCATTCAGACTGCTACGTGGGAGGACAG
TGAGACTGAGGCTTTGTCCCAGCTCTACACCGAATTCATGAAGAATTTCG
ATGGCTGTGCAGAGAGGGGCCTGGAGTACTGGCGTACCTGGGCTCGGACA
GAGTCTGCTTTGTCCCAGCTCTACACCGAATTCATGAAGAATTTCGATGG
CTGTGCAGAGAGGGGCCTGGAGTACTGGCGTACCTGGGCTCGGACAGAGT
CT
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