mRNA_M-pyrifera_M_contig115977.3316.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115977.3316.1
Unique NamemRNA_M-pyrifera_M_contig115977.3316.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115977.3316.1 vs. uniprot
Match: A0A2D9FXY1_9BACT (TetR family transcriptional regulator n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FXY1_9BACT)

HSP 1 Score: 162 bits (409), Expect = 9.410e-48
Identity = 72/140 (51.43%), Postives = 106/140 (75.71%), Query Frame = 1
Query:    1 QAGVEKIFPQVFEILSKDVSLIEKTTLIVDFYHSAFMDNPHLPSFVIFEMNQNPERFRTFFASHSFEIPEVFLHQVELEIEEGNIKPINPKQFLMNIISMCMMPMVARNLVQSLFKMDDDRYSGFLEERREMIPDLIFMG 420
            QAG++K+ PQ+F IL  ++ L EK   IV+FYH  F +N HLP+FV++EMNQ+PERF+ F    + E+P+VF  QV  E+ EG +KPI+ +QFL+NI+SMCMMPM+A+ +V+++F +D+  Y+ FLEERR +IP++I  G
Sbjct:   59 QAGIKKVMPQLFGILKSEMGLSEKVNEIVNFYHDMFRENQHLPTFVVYEMNQHPERFKEFLGVMNIELPDVFREQVNTEVSEGRMKPISAEQFLLNIVSMCMMPMLAKTMVKTIFALDEVAYANFLEERRALIPEIILNG 198          
BLAST of mRNA_M-pyrifera_M_contig115977.3316.1 vs. uniprot
Match: A0A521EC18_9BACT (Transcriptional regulator, TetR family n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521EC18_9BACT)

HSP 1 Score: 160 bits (405), Expect = 3.800e-47
Identity = 75/140 (53.57%), Postives = 106/140 (75.71%), Query Frame = 1
Query:    1 QAGVEKIFPQVFEILSKDVSLIEKTTLIVDFYHSAFMDNPHLPSFVIFEMNQNPERFRTFFASHSFEIPEVFLHQVELEIEEGNIKPINPKQFLMNIISMCMMPMVARNLVQSLFKMDDDRYSGFLEERREMIPDLIFMG 420
            QAGV+K+ PQ+F I+S ++SL EK   +V+FYH  F +N HLPSFV +EMNQ+PERF+ F ++ + +IP+VF  Q+  E+E G +  I P+QFLMNI+ M MMPMVA+ +VQ++F +D++ Y  FLEERR++IP LIF G
Sbjct:   59 QAGVKKVMPQLFGIISSELSLQEKVEKVVNFYHDMFWENQHLPSFVTYEMNQHPERFQEFMSNMNIKIPDVFADQIRKEVEAGRMADIPPRQFLMNIVGMSMMPMVAKKMVQTIFSLDEEGYFEFLEERRKLIPILIFKG 198          
BLAST of mRNA_M-pyrifera_M_contig115977.3316.1 vs. uniprot
Match: A0A3D1GCE2_9BACT (TetR/AcrR family transcriptional regulator n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GCE2_9BACT)

HSP 1 Score: 156 bits (395), Expect = 1.320e-45
Identity = 69/140 (49.29%), Postives = 102/140 (72.86%), Query Frame = 1
Query:    1 QAGVEKIFPQVFEILSKDVSLIEKTTLIVDFYHSAFMDNPHLPSFVIFEMNQNPERFRTFFASHSFEIPEVFLHQVELEIEEGNIKPINPKQFLMNIISMCMMPMVARNLVQSLFKMDDDRYSGFLEERREMIPDLIFMG 420
            + GV+K+ P +F+I++KD++L +KT  +V FYH  F  +PHLP FV+ EM+Q+PERF+ F      +IP+ FL QV   ++EG + PI P QFL+N++S+CM P +A+N+V ++F+M DD Y  F++ER EMIPDLIF G
Sbjct:   61 KTGVKKVLPALFQIINKDLTLYDKTVEVVRFYHDLFRRSPHLPMFVLHEMHQHPERFKEFIGEFRQKIPQTFLDQVNKAVQEGKLVPIKPHQFLINVLSLCMFPAIAKNMVVTIFEMSDDDYEAFMKEREEMIPDLIFKG 200          
BLAST of mRNA_M-pyrifera_M_contig115977.3316.1 vs. uniprot
Match: UPI001EDC61DE (TetR/AcrR family transcriptional regulator n=1 Tax=Rhodohalobacter sp. WB101 TaxID=2911366 RepID=UPI001EDC61DE)

HSP 1 Score: 155 bits (391), Expect = 4.860e-45
Identity = 72/143 (50.35%), Postives = 102/143 (71.33%), Query Frame = 1
Query:    1 QAGVEKIFPQVFEILSKDVSLIEKTTLIVDFYHSAFMDNPHLPSFVIFEMNQNPERFRTFFASHSFEIPEVFLHQVELEIEEGNIKPINPKQFLMNIISMCMMPMVARNLVQSLFKMDDDRYSGFLEERREMIPDLIFMGAST 429
            Q+ V+K+FPQ+  ILS    L  K   +V+FY++ F  NP+LPSFV+ EMNQ+P+RF+ F  S +  IP+ F  Q+E EIE+G I P+ P  FL+NI+S+C+MP++AR LVQ+LF +DDD +  FL ER+E+IP +IF G  T
Sbjct:   59 QSSVKKVFPQLIAILSSGDELEAKVKKVVEFYYNTFRKNPYLPSFVLHEMNQHPKRFKEFINSQNIRIPKEFAEQLETEIEKGRIMPMKPTHFLINIVSLCLMPVIARTLVQTLFSLDDDDFDAFLAERKELIPKVIFSGVQT 201          
BLAST of mRNA_M-pyrifera_M_contig115977.3316.1 vs. uniprot
Match: UPI000369F60E (TetR/AcrR family transcriptional regulator n=1 Tax=Gracilimonas tropica TaxID=454600 RepID=UPI000369F60E)

HSP 1 Score: 152 bits (385), Expect = 4.050e-44
Identity = 71/140 (50.71%), Postives = 102/140 (72.86%), Query Frame = 1
Query:    1 QAGVEKIFPQVFEILSKDVSLIEKTTLIVDFYHSAFMDNPHLPSFVIFEMNQNPERFRTFFASHSFEIPEVFLHQVELEIEEGNIKPINPKQFLMNIISMCMMPMVARNLVQSLFKMDDDRYSGFLEERREMIPDLIFMG 420
            +AGV KI PQ+F IL  ++ + +K   IV FYH  F +N HLPSFV++EMNQ+PERF  F    +  +PEVF  QV  E+++G +K I+ +QFL+NI+SMCMMPM+AR +V+++F +D+  YS  LEER+ +IP++IF G
Sbjct:   59 RAGVRKIMPQLFGILKSELPIEQKVQDIVVFYHEMFKENRHLPSFVVYEMNQHPERFTEFIEGMNIHLPEVFTKQVNTEVQQGRMKNISSEQFLLNIVSMCMMPMLARTMVKTIFSLDEKGYSDLLEERKALIPEIIFNG 198          
BLAST of mRNA_M-pyrifera_M_contig115977.3316.1 vs. uniprot
Match: A0A6I7NTG1_9BACT (TetR/AcrR family transcriptional regulator n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6I7NTG1_9BACT)

HSP 1 Score: 152 bits (384), Expect = 5.570e-44
Identity = 71/140 (50.71%), Postives = 100/140 (71.43%), Query Frame = 1
Query:    1 QAGVEKIFPQVFEILSKDVSLIEKTTLIVDFYHSAFMDNPHLPSFVIFEMNQNPERFRTFFASHSFEIPEVFLHQVELEIEEGNIKPINPKQFLMNIISMCMMPMVARNLVQSLFKMDDDRYSGFLEERREMIPDLIFMG 420
            QAG   IFP + +IL  ++ + +K   IVDFY+S F  NP LP+FV+ EMN+NP++FR F  S +  IP+ F  Q++ E+E G + P+ P  FLMN++SMCMMPMVAR +VQ++F++DD+ Y  FLEER+EMI  +IF G
Sbjct:   59 QAGAANIFPSLIKILESEMPIRQKVEEIVDFYYSIFRTNPFLPAFVVHEMNRNPKQFREFIMSLNIRIPKKFSEQIKSEVEGGRMMPLKPHHFLMNVVSMCMMPMVARQMVQAIFRLDDEMYWEFLEERKEMISKIIFSG 198          
BLAST of mRNA_M-pyrifera_M_contig115977.3316.1 vs. uniprot
Match: UPI001F39E22E (TetR/AcrR family transcriptional regulator n=1 Tax=Rhodohalobacter sp. 614A TaxID=2908649 RepID=UPI001F39E22E)

HSP 1 Score: 151 bits (381), Expect = 1.580e-43
Identity = 69/140 (49.29%), Postives = 105/140 (75.00%), Query Frame = 1
Query:    1 QAGVEKIFPQVFEILSKDVSLIEKTTLIVDFYHSAFMDNPHLPSFVIFEMNQNPERFRTFFASHSFEIPEVFLHQVELEIEEGNIKPINPKQFLMNIISMCMMPMVARNLVQSLFKMDDDRYSGFLEERREMIPDLIFMG 420
            Q+ V+KIFP +  ILS D  L  K   +V+FY++ F  NP+LPSFVI EMNQ+P+RF+ F +S   EIP  F +Q++ EI++G I P+ P  FL+NI+S+C+MP++AR +VQ+LF +DD+++  FLEER++++P++IF G
Sbjct:   59 QSSVKKIFPGLVSILSSDDELQAKVKRVVEFYYTMFRKNPYLPSFVIHEMNQHPKRFKEFISSLEIEIPSKFANQLQDEIDQGKILPMKPIHFLINIVSLCLMPVIARTMVQTLFSLDDEQFDQFLEERKDLVPEIIFNG 198          
BLAST of mRNA_M-pyrifera_M_contig115977.3316.1 vs. uniprot
Match: A0A2A2G703_9BACT (TetR family transcriptional regulator n=1 Tax=Aliifodinibius sp. WN023 TaxID=2032627 RepID=A0A2A2G703_9BACT)

HSP 1 Score: 132 bits (332), Expect = 4.010e-36
Identity = 56/137 (40.88%), Postives = 96/137 (70.07%), Query Frame = 1
Query:    1 QAGVEKIFPQVFEILSKDVSLIEKTTLIVDFYHSAFMDNPHLPSFVIFEMNQNPERFRTFFASHSFEIPEVFLHQVELEIEEGNIKPINPKQFLMNIISMCMMPMVARNLVQSLFKMDDDRYSGFLEERREMIPDLI 411
            Q  + + FP++ ++L+ D++L+ K   +V+ Y+  F  +PHLP FVI EMNQ+P+RFR F     FEIPE F+ Q++ EI  G ++ I+P++F++N I +C+ P++AR +V+++F M +D+Y  FLE+R++ +P  I
Sbjct:   59 QDSIRQFFPEILKVLNADLALVPKIEKLVETYYEMFKKHPHLPRFVIHEMNQHPDRFRGFVRKEGFEIPERFVEQIKTEIASGTMRKIDPREFIINTIGLCVFPLIARPMVETVFDMSEDQYRQFLEQRKKELPKFI 195          
BLAST of mRNA_M-pyrifera_M_contig115977.3316.1 vs. uniprot
Match: A0A6M1SZ38_9BACT (TetR/AcrR family transcriptional regulator n=1 Tax=Balneolaceae bacterium YR4-1 TaxID=2709311 RepID=A0A6M1SZ38_9BACT)

HSP 1 Score: 125 bits (315), Expect = 1.470e-33
Identity = 53/137 (38.69%), Postives = 96/137 (70.07%), Query Frame = 1
Query:    1 QAGVEKIFPQVFEILSKDVSLIEKTTLIVDFYHSAFMDNPHLPSFVIFEMNQNPERFRTFFASHSFEIPEVFLHQVELEIEEGNIKPINPKQFLMNIISMCMMPMVARNLVQSLFKMDDDRYSGFLEERREMIPDLI 411
            Q  + + FP++F++L+ ++    K   +V+ Y++ F  +PHLP FVI EMNQ+PERF+ F  +   +IP  F+ Q+E E++ G IK I+P+QF++N I +C+ P++A+ +++++F+MDD +++ FLE R++ +P  I
Sbjct:   59 QQSIREFFPKIFKVLNGEMEFEAKIEKLVETYYTMFRSHPHLPRFVIHEMNQHPERFQYFMRNIGIKIPARFIEQIEREVKSGRIKKIDPRQFIINTIGLCVFPVIAKPMIETVFEMDDKQFNDFLEHRKKELPVFI 195          
BLAST of mRNA_M-pyrifera_M_contig115977.3316.1 vs. uniprot
Match: A0A1G7D3Z2_9FLAO (Transcriptional regulator, TetR family n=1 Tax=Pricia antarctica TaxID=641691 RepID=A0A1G7D3Z2_9FLAO)

HSP 1 Score: 108 bits (270), Expect = 8.280e-27
Identity = 52/139 (37.41%), Postives = 86/139 (61.87%), Query Frame = 1
Query:   13 EKIFPQVFEILSKDVSLIEKTTLIVDFYHSAFMDNPHLPSFVIFEMNQNPERFRTFFASHSFEIPEVFLHQVELEIEEGNIKPINPKQFLMNIISMCMMPMVARNLVQSLFKMDDDRYSGFLEERREMIPDLIFMGAST 429
            +K  P V  I + + S+ EK     D Y S  ++NP+LP+F+I E+N NPE   TFF ++S   P +F  Q+  EIE+G ++P++PKQ L+N+ S+C  P V   L++ + K+D + ++  +EER++++P LI     T
Sbjct:   62 QKFAPHVNGIFNSEASVFEKIKGFADSYISFVIENPYLPTFLIQEININPEFAETFFTANSAPDPALFEKQIAEEIEKGILRPVDPKQLLLNLFSLCAFPFVGSGLIKGILKLDKESFNTMMEERKKLVPQLIINSIKT 200          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115977.3316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9FXY1_9BACT9.410e-4851.43TetR family transcriptional regulator n=2 Tax=Baln... [more]
A0A521EC18_9BACT3.800e-4753.57Transcriptional regulator, TetR family n=1 Tax=Gra... [more]
A0A3D1GCE2_9BACT1.320e-4549.29TetR/AcrR family transcriptional regulator n=1 Tax... [more]
UPI001EDC61DE4.860e-4550.35TetR/AcrR family transcriptional regulator n=1 Tax... [more]
UPI000369F60E4.050e-4450.71TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A6I7NTG1_9BACT5.570e-4450.71TetR/AcrR family transcriptional regulator n=1 Tax... [more]
UPI001F39E22E1.580e-4349.29TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A2A2G703_9BACT4.010e-3640.88TetR family transcriptional regulator n=1 Tax=Alii... [more]
A0A6M1SZ38_9BACT1.470e-3338.69TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A1G7D3Z2_9FLAO8.280e-2737.41Transcriptional regulator, TetR family n=1 Tax=Pri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115977contigM-pyrifera_M_contig115977:3..446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score151.4
Seed ortholog evalue3.4e-34
Seed eggNOG ortholog1121930.AQXG01000002_gene2099
KEGG koko:K09017
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Bacterial regulatory proteins, tetR family
EggNOG OGs1IS9H@117747,4NIBT@976,COG1309@1,COG1309@2
COG Functional cat.K
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size444
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.2717426-CDS-M-pyrifera_M_contig115977:2..4461622815676.2717426-CDS-M-pyrifera_M_contig115977:2..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115977 3..446 +
1692277516.763696-CDS-M-pyrifera_M_contig115977:2..4461692277516.763696-CDS-M-pyrifera_M_contig115977:2..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115977 3..446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115977.3316.1prot_M-pyrifera_M_contig115977.3316.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115977 3..446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115977.3316.1

>prot_M-pyrifera_M_contig115977.3316.1 ID=prot_M-pyrifera_M_contig115977.3316.1|Name=mRNA_M-pyrifera_M_contig115977.3316.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
QAGVEKIFPQVFEILSKDVSLIEKTTLIVDFYHSAFMDNPHLPSFVIFEM
NQNPERFRTFFASHSFEIPEVFLHQVELEIEEGNIKPINPKQFLMNIISM
CMMPMVARNLVQSLFKMDDDRYSGFLEERREMIPDLIFMGASTKRGV*
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mRNA from alignment at M-pyrifera_M_contig115977:3..446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115977.3316.1 ID=mRNA_M-pyrifera_M_contig115977.3316.1|Name=mRNA_M-pyrifera_M_contig115977.3316.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig115977:3..446+ (Macrocystis pyrifera P11B4 male)
CAGGCAGGGGTGGAAAAAATATTTCCTCAGGTTTTTGAAATCCTAAGCAA AGACGTTTCACTGATAGAAAAAACGACACTTATTGTTGATTTCTATCATT CAGCCTTTATGGATAATCCTCATTTGCCATCATTCGTGATTTTTGAAATG AACCAAAATCCGGAGCGGTTCAGAACTTTTTTTGCAAGTCATAGCTTTGA AATTCCTGAAGTTTTTTTGCATCAGGTGGAATTAGAAATTGAAGAAGGGA ATATCAAACCCATCAACCCAAAACAGTTTTTGATGAATATCATAAGCATG TGCATGATGCCAATGGTGGCAAGGAATCTGGTACAAAGCCTTTTCAAAAT GGATGACGATCGATACAGTGGGTTTCTTGAAGAACGAAGAGAAATGATTC CGGATTTAATTTTTATGGGAGCTTCAACCAAAAGAGGAGTTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115977:3..446+

>mRNA_M-pyrifera_M_contig115977.3316.1 ID=mRNA_M-pyrifera_M_contig115977.3316.1|Name=mRNA_M-pyrifera_M_contig115977.3316.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig115977:3..446+ (Macrocystis pyrifera P11B4 male)
CAGGCAGGGGTGGAAAAAATATTTCCTCAGGTTTTTGAAATCCTAAGCAA
AGACGTTTCACTGATAGAAAAAACGACACTTATTGTTGATTTCTATCATT
CAGCCTTTATGGATAATCCTCATTTGCCATCATTCGTGATTTTTGAAATG
AACCAAAATCCGGAGCGGTTCAGAACTTTTTTTGCAAGTCATAGCTTTGA
AATTCCTGAAGTTTTTTTGCATCAGGTGGAATTAGAAATTGAAGAAGGGA
ATATCAAACCCATCAACCCAAAACAGTTTTTGATGAATATCATAAGCATG
TGCATGATGCCAATGGTGGCAAGGAATCTGGTACAAAGCCTTTTCAAAAT
GGATGACGATCGATACAGTGGGTTTCTTGAAGAACGAAGAGAAATGATTC
CGGATTTAATTTTTATGGGAGCTTCAACCAAAAGAGGAGTTTAGCAGGCA
GGGGTGGAAAAAATATTTCCTCAGGTTTTTGAAATCCTAAGCAAAGACGT
TTCACTGATAGAAAAAACGACACTTATTGTTGATTTCTATCATTCAGCCT
TTATGGATAATCCTCATTTGCCATCATTCGTGATTTTTGAAATGAACCAA
AATCCGGAGCGGTTCAGAACTTTTTTTGCAAGTCATAGCTTTGAAATTCC
TGAAGTTTTTTTGCATCAGGTGGAATTAGAAATTGAAGAAGGGAATATCA
AACCCATCAACCCAAAACAGTTTTTGATGAATATCATAAGCATGTGCATG
ATGCCAATGGTGGCAAGGAATCTGGTACAAAGCCTTTTCAAAATGGATGA
CGATCGATACAGTGGGTTTCTTGAAGAACGAAGAGAAATGATTCCGGATT
TAATTTTTATGGGAGCTTCAACCAAAAGAGGAGTTTAG
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