mRNA_M-pyrifera_M_contig115969.3311.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115969.3311.1
Unique NamemRNA_M-pyrifera_M_contig115969.3311.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115969.3311.1 vs. uniprot
Match: A0A349B7C6_9ACTN (TIGR03086 family protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B7C6_9ACTN)

HSP 1 Score: 147 bits (370), Expect = 4.890e-42
Identity = 70/148 (47.30%), Postives = 96/148 (64.86%), Query Frame = 1
Query:    1 CDGWTARDIVEHVVTTQRDFLTGQPFAPDQIAVADPLEAWPVVRALVSAALADPSTANHPYDGYFGPTTFAQTIDDFYSLDLVVHSWDLATAVGLEDLRSIDPSEMVAVRASLAKVGDMLRQPGLFGPEVRVADSADEQTKFLAYVGR 444
            C+GWTAR +++HVV +Q  FL     AP+ +   DP   W  +R  + AA+ DP+TA+  YDG FGPTT A+T+D F S DLVVH+WD+A A GLE   ++ P E+  + A L  +GD +R PG FGPEV V + A  Q +FL ++GR
Sbjct:   33 CEGWTARQVLDHVVESQHGFLARFDLAPE-LTGDDPRARWATLRDAMLAAVDDPATASTEYDGMFGPTTLAETVDGFMSADLVVHAWDIARATGLEQHEAMPPEEVERLDAQLRGMGDAIRSPGAFGPEVPVPEDAPHQHRFLGFIGR 179          
BLAST of mRNA_M-pyrifera_M_contig115969.3311.1 vs. uniprot
Match: UPI0011114176 (TIGR03086 family metal-binding protein n=3 Tax=Nocardiaceae TaxID=85025 RepID=UPI0011114176)

HSP 1 Score: 137 bits (346), Expect = 2.350e-38
Identity = 69/150 (46.00%), Postives = 95/150 (63.33%), Query Frame = 1
Query:    1 CDGWTARDIVEHVVTTQRDFLT--GQPFAPDQIAVADPLEAWPVVRALVSAALADPSTANHPYDGYFGPTTFAQTIDDFYSLDLVVHSWDLATAVGLEDLRSIDPSEMVAVRASLAKVGDMLRQPGLFGPEVRVADSADEQTKFLAYVGR 444
            CDGWTARD+V+HVV TQR+ +T  G    P     ADP+ AW   R  V   L DP+  N  YDGYFG T+ A T+D FY+ DLVVH WDLA A GL++  +I  +++  V ++ A +G+ +R  G+ GP + V + AD  T+ LA++GR
Sbjct:   36 CDGWTARDLVQHVVDTQREIVTKVGLELPPGPSPEADPVGAWAATRDGVQEILDDPARGNLEYDGYFGRTSLAATVDTFYTFDLVVHGWDLARATGLDE--TIAAADLDFVESAAAGMGESIRMEGVCGPALEVPEGADRTTRVLAFLGR 183          
BLAST of mRNA_M-pyrifera_M_contig115969.3311.1 vs. uniprot
Match: A0A329R4M3_9ACTN (TIGR03086 family protein n=2 Tax=Actinomycetia TaxID=1760 RepID=A0A329R4M3_9ACTN)

HSP 1 Score: 137 bits (345), Expect = 3.060e-38
Identity = 70/150 (46.67%), Postives = 89/150 (59.33%), Query Frame = 1
Query:    1 CDGWTARDIVEHVVTT--QRDFLTGQPFAPDQIAVADPLEAWPVVRALVSAALADPSTANHPYDGYFGPTTFAQTIDDFYSLDLVVHSWDLATAVGLEDLRSIDPSEMVAVRASLAKVGDMLRQPGLFGPEVRVADSADEQTKFLAYVGR 444
            C+GWTARD+V+H+V    +     G    P      DP+ AW  VR  +   L DP  AN  YDGYFG TT A T+D F   DL+VH WDLA A GL++  +I P ++        ++GD LRQPG+ GP V VAD AD QTK LA++GR
Sbjct:   33 CEGWTARDVVQHLVDVLARTPGFVGLSIPPGPSVADDPVAAWAHVRDAMQEILDDPERANREYDGYFGRTTLAATVDSFVCFDLIVHGWDLARAAGLDE--TIPPHDVEDAFVLAEQLGDNLRQPGVCGPAVAVADGADRQTKLLAFLGR 180          
BLAST of mRNA_M-pyrifera_M_contig115969.3311.1 vs. uniprot
Match: A0A1G8I9T7_9NOCA (TIGR03086 family protein n=1 Tax=Rhodococcus triatomae TaxID=300028 RepID=A0A1G8I9T7_9NOCA)

HSP 1 Score: 137 bits (344), Expect = 4.860e-38
Identity = 71/150 (47.33%), Postives = 91/150 (60.67%), Query Frame = 1
Query:    1 CDGWTARDIVEHVVTTQRDFLT--GQPFAPDQIAVADPLEAWPVVRALVSAALADPSTANHPYDGYFGPTTFAQTIDDFYSLDLVVHSWDLATAVGLEDLRSIDPSEMVAVRASLAKVGDMLRQPGLFGPEVRVADSADEQTKFLAYVGR 444
            C GW+AR++V HV+ TQR+     G           DP+ AW  +R  + AAL DP  A H +DGYFG T FA TID FY  DLVVH WDLA A G ++  +I  +++V V   +  +GD +R  G+ GP V V DSAD QTK LAY+GR
Sbjct:   37 CAGWSAREVVAHVIDTQREMAERIGVTLPEGPSVENDPVTAWRTLRDGMQAALDDPDVAGHEFDGYFGRTDFASTIDTFYCFDLVVHGWDLARATGTDE--TIPDADVVWVENVVQGLGDNIRMEGICGPAVEVPDSADRQTKLLAYLGR 184          
BLAST of mRNA_M-pyrifera_M_contig115969.3311.1 vs. uniprot
Match: A0A7Z0EML9_9ACTN (Uncharacterized protein (TIGR03086 family) n=1 Tax=Nocardiopsis aegyptia TaxID=220378 RepID=A0A7Z0EML9_9ACTN)

HSP 1 Score: 135 bits (339), Expect = 2.540e-37
Identity = 69/150 (46.00%), Postives = 91/150 (60.67%), Query Frame = 1
Query:    1 CDGWTARDIVEHVVTTQRDFL--TGQPFAPDQIAVADPLEAWPVVRALVSAALADPSTANHPYDGYFGPTTFAQTIDDFYSLDLVVHSWDLATAVGLEDLRSIDPSEMVAVRASLAKVGDMLRQPGLFGPEVRVADSADEQTKFLAYVGR 444
            C+GW+ARD+V HVV TQ  FL   G+       A  DP  AW   R +V A L DP  A   +DG+FG TTFA+ +D F + DL++H WDLA A G +D   IDP++M     +    G  LR+ G+ GPE+   D ADEQT+FLA++GR
Sbjct:   33 CEGWSARDVVAHVVDTQGMFLRLVGRDLGDIPSAADDPAAAWDAARGVVQADLDDPDRAGTEFDGFFGRTTFAEAVDRFLNFDLIIHRWDLARATGQDD--RIDPADMRWALEATTVFGPHLRREGVCGPELTPPDGADEQTRFLAFLGR 180          
BLAST of mRNA_M-pyrifera_M_contig115969.3311.1 vs. uniprot
Match: A0A8G0S3A1_9ACTN (TIGR03086 family protein n=1 Tax=Nocardiopsis sp. MT53 TaxID=2865672 RepID=A0A8G0S3A1_9ACTN)

HSP 1 Score: 134 bits (337), Expect = 5.090e-37
Identity = 72/152 (47.37%), Postives = 91/152 (59.87%), Query Frame = 1
Query:    1 CDGWTARDIVEHVVTTQRDFL--TGQPFAPDQIAVADPLEAWPVVRALVSAALADPSTANHPYDGYFGPTTFAQTIDDFYSLDLVVHSWDLATAVGLEDLRSIDPSEMVAVRASLAKVGDMLRQPGLFGPEVRVADSADEQTKFLAYVGRVS 450
            C+GWTARD+V HVV TQ  FL   G+       A  DP  AW   RA+V A L DP  A   +DG+FG TTFAQ +D F   DL+VH WDLA A GL++  +IDP ++   R +    GD LR  G+ G E+     ADEQT+ LA++GR S
Sbjct:   33 CEGWTARDVVGHVVDTQGMFLGLVGRELGDIPKAADDPAAAWDAARAVVLADLTDPERAGAEFDGFFGRTTFAQAVDRFLGFDLIVHRWDLARATGLDE--AIDPDDVRWARRATEFFGDSLRSEGVCGTELTPPADADEQTRLLAHLGRRS 182          
BLAST of mRNA_M-pyrifera_M_contig115969.3311.1 vs. uniprot
Match: UPI0018CC8E8C (TIGR03086 family metal-binding protein n=1 Tax=unclassified Rhodococcus TaxID=192944 RepID=UPI0018CC8E8C)

HSP 1 Score: 134 bits (337), Expect = 5.390e-37
Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = 1
Query:    1 CDGWTARDIVEHVVTTQRDFLT--GQPFAPDQIAVADPLEAWPVVRALVSAALADPSTANHPYDGYFGPTTFAQTIDDFYSLDLVVHSWDLATAVGLEDLRSIDPSEMVAVRASLAKVGDMLRQPGLFGPEVRVADSADEQTKFLAYVGR 444
            CDGWTARD+V+HVV TQRD +T  G     +    ADP+ AW   R  +   L DP+  N  Y+GYFG T+ A T+D FY+ DLVVH WDLA A GL++  +I  +++  V ++   +G+ +R  G+ GP V V + AD  T+ L Y+GR
Sbjct:   36 CDGWTARDVVQHVVETQRDIVTKVGLELPSEPSPEADPVGAWIATRDAMQEILDDPARGNLEYEGYFGRTSLAATVDRFYTFDLVVHGWDLARATGLDE--TIADADLDFVESAATAMGESIRMAGVCGPAVDVPEGADRTTRVLGYLGR 183          
BLAST of mRNA_M-pyrifera_M_contig115969.3311.1 vs. uniprot
Match: A0A0N0ALW2_9ACTN (MDMPI_N domain-containing protein n=1 Tax=Nocardiopsis sp. NRRL B-16309 TaxID=1519494 RepID=A0A0N0ALW2_9ACTN)

HSP 1 Score: 134 bits (336), Expect = 7.210e-37
Identity = 69/152 (45.39%), Postives = 91/152 (59.87%), Query Frame = 1
Query:    1 CDGWTARDIVEHVVTTQRDFL--TGQPFAPDQIAVADPLEAWPVVRALVSAALADPSTANHPYDGYFGPTTFAQTIDDFYSLDLVVHSWDLATAVGLEDLRSIDPSEMVAVRASLAKVGDMLRQPGLFGPEVRVADSADEQTKFLAYVGRVS 450
            C+GWTARD+V HVV TQ  FL   G+          DP+ AW   R +V A L DP  A   +DG+FG T+FAQ  D F + DL++H WDLA A G ++   IDP+++     + A  G  LR  G+ GPE+   D ADEQT+FLA++GR S
Sbjct:   33 CEGWTARDVVAHVVDTQGMFLQLVGRDLGDVPSVADDPVAAWDAARGVVQADLGDPERAGTEFDGFFGRTSFAQAADRFLNFDLIIHRWDLARATGQDE--RIDPADIAWALEATAVFGPYLRGEGVCGPELTPPDGADEQTRFLAFLGRRS 182          
BLAST of mRNA_M-pyrifera_M_contig115969.3311.1 vs. uniprot
Match: A0A7X9R4C8_9NOCA (TIGR03086 family protein n=2 Tax=unclassified Rhodococcus TaxID=192944 RepID=A0A7X9R4C8_9NOCA)

HSP 1 Score: 134 bits (336), Expect = 7.640e-37
Identity = 65/152 (42.76%), Postives = 91/152 (59.87%), Query Frame = 1
Query:    1 CDGWTARDIVEHVVTTQRDFLTGQPF-APDQIAVADPLEAWPVVRALVSAALADPSTANHPYDGYFGPTTFAQTIDDFYSLDLVVHSWDLATAVGLEDLRSIDPSEMVAVRASLAKVGDMLRQPGLFGPEVRVADSADEQTKFLAYVGRVSP 453
            C+GWTARD++ H++ TQR+F TG+     D+ ++ DP  AW    A V+  +AD +  N PYDGYFGPTT   T D FY  D++VH WDLAT+ GLE+  + + +E+  + A     GD L   G+  P V   + AD  T+ LA +GR  P
Sbjct:   33 CEGWTARDVLSHIIDTQREFFTGRDLDLGDRPSLDDPAGAWQKHNAQVADIVADDALVNTPYDGYFGPTTIGATFDQFYVWDMIVHRWDLATSAGLEE--TFNDAELERIEAGADSFGDSLYMDGVCAPGVEAPEGADRSTRVLARLGRRRP 182          
BLAST of mRNA_M-pyrifera_M_contig115969.3311.1 vs. uniprot
Match: A0A848KQC8_9NOCA (TIGR03086 family protein n=1 Tax=Antrihabitans stalactiti TaxID=2584121 RepID=A0A848KQC8_9NOCA)

HSP 1 Score: 133 bits (335), Expect = 1.080e-36
Identity = 68/150 (45.33%), Postives = 92/150 (61.33%), Query Frame = 1
Query:    1 CDGWTARDIVEHVVTTQRDFLT--GQPFAPDQIAVADPLEAWPVVRALVSAALADPSTANHPYDGYFGPTTFAQTIDDFYSLDLVVHSWDLATAVGLEDLRSIDPSEMVAVRASLAKVGDMLRQPGLFGPEVRVADSADEQTKFLAYVGR 444
            CDGW+ARD++ HVV +Q DF+T       P      DP  AW   R  + A L DP+ AN  YD  FG +T A+T+D F+  DLVVH WD+A A G+++  SI P ++  +++    +GDM+R  G FGP V V   AD+QTK LAY+GR
Sbjct:   36 CDGWSARDVLRHVVDSQADFVTKVDLEIPPGPSVDDDPSAAWQHTRDAMQAILDDPAKANRSYDSSFGSSTLAKTVDSFFCFDLVVHGWDIAHATGIDE--SIAPKDLDFLKSFADGMGDMMRTSGSFGPAVDVPVDADQQTKVLAYLGR 183          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115969.3311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A349B7C6_9ACTN4.890e-4247.30TIGR03086 family protein n=1 Tax=Acidimicrobiaceae... [more]
UPI00111141762.350e-3846.00TIGR03086 family metal-binding protein n=3 Tax=Noc... [more]
A0A329R4M3_9ACTN3.060e-3846.67TIGR03086 family protein n=2 Tax=Actinomycetia Tax... [more]
A0A1G8I9T7_9NOCA4.860e-3847.33TIGR03086 family protein n=1 Tax=Rhodococcus triat... [more]
A0A7Z0EML9_9ACTN2.540e-3746.00Uncharacterized protein (TIGR03086 family) n=1 Tax... [more]
A0A8G0S3A1_9ACTN5.090e-3747.37TIGR03086 family protein n=1 Tax=Nocardiopsis sp. ... [more]
UPI0018CC8E8C5.390e-3744.67TIGR03086 family metal-binding protein n=1 Tax=unc... [more]
A0A0N0ALW2_9ACTN7.210e-3745.39MDMPI_N domain-containing protein n=1 Tax=Nocardio... [more]
A0A7X9R4C8_9NOCA7.640e-3742.76TIGR03086 family protein n=2 Tax=unclassified Rhod... [more]
A0A848KQC8_9NOCA1.080e-3645.33TIGR03086 family protein n=1 Tax=Antrihabitans sta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115969contigM-pyrifera_M_contig115969:104..562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score134.0
Seed ortholog evalue5.8e-29
Seed eggNOG ortholog446468.Ndas_4530
Preferred namerlmH
KEGG koko:K00783
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042802,GO:0042803,GO:0043021,GO:0043022,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0044877,GO:0046483,GO:0046983,GO:0070037,GO:0070038,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
EggNOG free text desc.Mycothiol maleylpyruvate isomerase N-terminal domain
EggNOG OGs2I47S@201174,4EPWB@85012,COG1576@1,COG1576@2
EC2.1.1.177
COG Functional cat.J
Best tax levelStreptosporangiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.033913-CDS-M-pyrifera_M_contig115969:103..5621622815676.033913-CDS-M-pyrifera_M_contig115969:103..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115969 104..562 -
1692277516.6473348-CDS-M-pyrifera_M_contig115969:103..5621692277516.6473348-CDS-M-pyrifera_M_contig115969:103..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115969 104..562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115969.3311.1prot_M-pyrifera_M_contig115969.3311.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115969 104..562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115969.3311.1

>prot_M-pyrifera_M_contig115969.3311.1 ID=prot_M-pyrifera_M_contig115969.3311.1|Name=mRNA_M-pyrifera_M_contig115969.3311.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
CDGWTARDIVEHVVTTQRDFLTGQPFAPDQIAVADPLEAWPVVRALVSAA
LADPSTANHPYDGYFGPTTFAQTIDDFYSLDLVVHSWDLATAVGLEDLRS
IDPSEMVAVRASLAKVGDMLRQPGLFGPEVRVADSADEQTKFLAYVGRVS
PS*
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mRNA from alignment at M-pyrifera_M_contig115969:104..562-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115969.3311.1 ID=mRNA_M-pyrifera_M_contig115969.3311.1|Name=mRNA_M-pyrifera_M_contig115969.3311.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig115969:104..562- (Macrocystis pyrifera P11B4 male)
TGCGACGGCTGGACGGCTCGAGACATCGTCGAGCACGTGGTGACCACCCA ACGAGATTTCCTCACCGGACAGCCCTTTGCTCCCGACCAGATCGCGGTCG CCGATCCGTTGGAAGCTTGGCCGGTCGTCCGAGCGCTGGTCTCCGCCGCT CTGGCCGACCCGTCGACGGCGAACCACCCCTACGACGGCTACTTCGGCCC CACGACGTTCGCCCAGACCATCGACGACTTCTACTCGCTCGACCTGGTGG TCCACTCGTGGGATCTGGCCACCGCGGTGGGCCTCGAGGACCTGCGGTCG ATCGATCCATCGGAGATGGTCGCGGTCCGAGCCAGCTTGGCCAAGGTCGG TGACATGCTTCGCCAGCCTGGGTTGTTCGGCCCCGAGGTGAGGGTCGCTG ACTCGGCCGACGAACAGACGAAGTTCCTCGCCTACGTCGGCCGAGTCAGC CCTTCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115969:104..562-

>mRNA_M-pyrifera_M_contig115969.3311.1 ID=mRNA_M-pyrifera_M_contig115969.3311.1|Name=mRNA_M-pyrifera_M_contig115969.3311.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig115969:104..562- (Macrocystis pyrifera P11B4 male)
TGCGACGGCTGGACGGCTCGAGACATCGTCGAGCACGTGGTGACCACCCA
ACGAGATTTCCTCACCGGACAGCCCTTTGCTCCCGACCAGATCGCGGTCG
CCGATCCGTTGGAAGCTTGGCCGGTCGTCCGAGCGCTGGTCTCCGCCGCT
CTGGCCGACCCGTCGACGGCGAACCACCCCTACGACGGCTACTTCGGCCC
CACGACGTTCGCCCAGACCATCGACGACTTCTACTCGCTCGACCTGGTGG
TCCACTCGTGGGATCTGGCCACCGCGGTGGGCCTCGAGGACCTGCGGTCG
ATCGATCCATCGGAGATGGTCGCGGTCCGAGCCAGCTTGGCCAAGGTCGG
TGACATGCTTCGCCAGCCTGGGTTGTTCGGCCCCGAGGTGAGGGTCGCTG
ACTCGGCCGACGAACAGACGAAGTTCCTCGCCTACGTCGGCCGAGTCAGC
CCTTCGTGATGCGACGGCTGGACGGCTCGAGACATCGTCGAGCACGTGGT
GACCACCCAACGAGATTTCCTCACCGGACAGCCCTTTGCTCCCGACCAGA
TCGCGGTCGCCGATCCGTTGGAAGCTTGGCCGGTCGTCCGAGCGCTGGTC
TCCGCCGCTCTGGCCGACCCGTCGACGGCGAACCACCCCTACGACGGCTA
CTTCGGCCCCACGACGTTCGCCCAGACCATCGACGACTTCTACTCGCTCG
ACCTGGTGGTCCACTCGTGGGATCTGGCCACCGCGGTGGGCCTCGAGGAC
CTGCGGTCGATCGATCCATCGGAGATGGTCGCGGTCCGAGCCAGCTTGGC
CAAGGTCGGTGACATGCTTCGCCAGCCTGGGTTGTTCGGCCCCGAGGTGA
GGGTCGCTGACTCGGCCGACGAACAGACGAAGTTCCTCGCCTACGTCGGC
CGAGTCAGCCCTTCGTGA
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