mRNA_M-pyrifera_M_contig115953.3310.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115953.3310.1
Unique NamemRNA_M-pyrifera_M_contig115953.3310.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115953.3310.1 vs. uniprot
Match: D7G3H6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H6_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.390e-24
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 1
Query:    1 MKPLLDDDFVAYMGYAIMQEREEIVKSGLDPDREPTRWLQVLGVIQKGVMAELQKSVYEDV 183
            MKPLLDD FVAYMGYAI  ERE + K GL+PDREP+RWLQVLGVIQKGVMAELQKSV++DV
Sbjct:  409 MKPLLDDKFVAYMGYAIQTEREAVDKRGLNPDREPSRWLQVLGVIQKGVMAELQKSVHQDV 469          
BLAST of mRNA_M-pyrifera_M_contig115953.3310.1 vs. uniprot
Match: A0A6H5KR11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR11_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.890e-23
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 1
Query:    1 MKPLLDDDFVAYMGYAIMQEREEIVKSGLDPDREPTRWLQVLGVIQKGVMAELQKSVYEDV 183
            MKPLLDD FVAYMG AI  ERE I K GL+PDREP+RWLQVLGVIQKGVMAELQKSV++DV
Sbjct:  672 MKPLLDDKFVAYMGDAIQTEREAIEKRGLNPDREPSRWLQVLGVIQKGVMAELQKSVHQDV 732          
BLAST of mRNA_M-pyrifera_M_contig115953.3310.1 vs. uniprot
Match: A0A836CAC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.400e-18
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    1 MKPLLDDDFVAYMGYAIMQEREEIVKSGLDPDREPTRWLQVLGVIQKGVMAELQKSVYEDV 183
            MKPLL+ DFVAY+ YAI +ER  +   G+DPDREP+RWLQVLGVI++GV AEL+K VY DV
Sbjct:  133 MKPLLNADFVAYLAYAIEKERGALRAKGMDPDREPSRWLQVLGVIKQGVFAELEKDVYLDV 193          
BLAST of mRNA_M-pyrifera_M_contig115953.3310.1 vs. uniprot
Match: A0A7S2WL98_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL98_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.730e-15
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 MKPLLDDDFVAYMGYAIMQEREEIVKSGLDPDREPTRWLQVLGVIQKGVMAELQKSVYEDV 183
            M+PLLD DF+AY+ YAI +ERE I    L+PD EPT WLQ+LG+I+ GV AEL K + ED+
Sbjct:   59 MRPLLDQDFIAYLDYAIDKEREGIRGRNLNPDLEPTEWLQILGIIKNGVYAELGKGLKEDI 119          
BLAST of mRNA_M-pyrifera_M_contig115953.3310.1 vs. uniprot
Match: A0A7S4D6V5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6V5_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 1.890e-13
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 MKPLLDDDFVAYMGYAIMQEREEIVKSGLDPDREPTRWLQVLGVIQKGVMAELQKSVYEDV 183
            MK   D+DFVAY+ +AI +ER++I    LDPDREP+ WLQVL +++KG+  ELQK ++E V
Sbjct:  167 MKFFFDEDFVAYLLFAIREERKKIRAQALDPDREPSEWLQVLLILRKGIWRELQKDIHEHV 227          
BLAST of mRNA_M-pyrifera_M_contig115953.3310.1 vs. uniprot
Match: A0A7S1XYX0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYX0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.640e-13
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 MKPLLDDDFVAYMGYAIMQEREEIVKSGLDPDREPTRWLQVLGVIQKGVMAELQKSVYEDV 183
            M+ LLD +F+A++ YAI +E  ++   GLDP+REPT WLQVL VI+KGV+AE    V  DV
Sbjct:  166 MRSLLDAEFIAFLRYAIEKEAADVASKGLDPEREPTEWLQVLNVIRKGVLAEKAVDVQNDV 226          
BLAST of mRNA_M-pyrifera_M_contig115953.3310.1 vs. uniprot
Match: A0A2A9M875_9APIC (CS domain-containing protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9M875_9APIC)

HSP 1 Score: 68.6 bits (166), Expect = 5.000e-12
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 MKPLLDDDFVAYMGYAIMQEREEIVKSGLDPDREPTRWLQVLGVIQKGVMAELQKSVYEDV 183
            MK LL+ DF+AY+ +AI  ER+ I K G +PD  P+RWL VL +I KGVMA  +K ++EDV
Sbjct: 1349 MKQLLNRDFLAYLEFAIHAERKRIQKEGNNPDAAPSRWLMVLMIIHKGVMAIYEKEIWEDV 1409          
BLAST of mRNA_M-pyrifera_M_contig115953.3310.1 vs. uniprot
Match: A0A7S0GG33_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GG33_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.390e-9
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    1 MKPLLDDDFVAYMGYAIMQEREEIVKSGLDPDREPTRWLQVLGVIQKGVMAELQKSV 171
            M+PLL++DF++Y+ YAI +E   +++ G   D E  RW  VL ++QKGV AEL +S+
Sbjct:  187 MRPLLNEDFISYLSYAIAEEEGRLLRRGYLEDPEQNRWWMVLQIVQKGVYAELGRSL 243          
BLAST of mRNA_M-pyrifera_M_contig115953.3310.1 vs. uniprot
Match: W7AGC0_9APIC (NudC domain-containing protein 1 n=1 Tax=Plasmodium inui San Antonio 1 TaxID=1237626 RepID=W7AGC0_9APIC)

HSP 1 Score: 58.2 bits (139), Expect = 2.300e-8
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 MKPLLDDDFVAYMGYAIMQEREEIVKSGLDPDREPTRWLQVLGVIQKGVMAELQKSVYEDV 183
            MKPLLD  F+ Y+ +AI  E+ +I   G D   +P+ WL +L +IQKG+ + L+K ++EDV
Sbjct:  743 MKPLLDYSFLGYVKHAIRMEKRKIKMEGKDFREQPSDWLIILMIIQKGIYSILEKDIWEDV 803          
BLAST of mRNA_M-pyrifera_M_contig115953.3310.1 vs. uniprot
Match: A0A1J1H3A9_PLARL (NudC domain-containing protein 1 n=1 Tax=Plasmodium relictum TaxID=85471 RepID=A0A1J1H3A9_PLARL)

HSP 1 Score: 57.8 bits (138), Expect = 3.150e-8
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 MKPLLDDDFVAYMGYAIMQEREEIVKSGLDPDREPTRWLQVLGVIQKGVMAELQKSVYEDV 183
            MKPLLD  F+ Y+ +AI  E++ I     D    PT WL +L +IQKG+ + LQK ++EDV
Sbjct:  738 MKPLLDYSFLGYIKHAIEMEKKHIQSQNKDFRENPTDWLIILMIIQKGIYSILQKDIWEDV 798          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115953.3310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G3H6_ECTSI2.390e-2481.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR11_9PHAE2.890e-2381.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAC4_9STRA2.400e-1867.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WL98_9STRA1.730e-1559.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4D6V5_HETAK1.890e-1354.10Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1XYX0_9STRA3.640e-1354.10Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2A9M875_9APIC5.000e-1254.10CS domain-containing protein n=1 Tax=Besnoitia bes... [more]
A0A7S0GG33_9STRA6.390e-945.61Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
W7AGC0_9APIC2.300e-844.26NudC domain-containing protein 1 n=1 Tax=Plasmodiu... [more]
A0A1J1H3A9_PLARL3.150e-845.90NudC domain-containing protein 1 n=1 Tax=Plasmodiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115953contigM-pyrifera_M_contig115953:256..438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2e-20
Seed eggNOG ortholog2880.D7G3H6
Hectar predicted targeting categoryother localisation
EggNOG OGs2DKX4@1,2S63Q@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size183
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.9930735-CDS-M-pyrifera_M_contig115953:255..4381622815675.9930735-CDS-M-pyrifera_M_contig115953:255..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115953 256..438 +
1692277516.6378922-CDS-M-pyrifera_M_contig115953:255..4381692277516.6378922-CDS-M-pyrifera_M_contig115953:255..438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115953 256..438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115953.3310.1prot_M-pyrifera_M_contig115953.3310.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115953 256..438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115953.3310.1

>prot_M-pyrifera_M_contig115953.3310.1 ID=prot_M-pyrifera_M_contig115953.3310.1|Name=mRNA_M-pyrifera_M_contig115953.3310.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MKPLLDDDFVAYMGYAIMQEREEIVKSGLDPDREPTRWLQVLGVIQKGVM
AELQKSVYEDV
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mRNA from alignment at M-pyrifera_M_contig115953:256..438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115953.3310.1 ID=mRNA_M-pyrifera_M_contig115953.3310.1|Name=mRNA_M-pyrifera_M_contig115953.3310.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig115953:256..438+ (Macrocystis pyrifera P11B4 male)
ATGAAGCCGCTGCTGGACGACGATTTCGTAGCTTACATGGGCTACGCGAT CATGCAGGAGCGAGAAGAGATCGTCAAGAGCGGCCTGGACCCGGATCGTG AGCCGACGAGGTGGCTCCAGGTTTTGGGCGTGATCCAGAAAGGGGTGATG GCGGAGCTGCAAAAGAGCGTCTACGAAGATGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115953:256..438+

>mRNA_M-pyrifera_M_contig115953.3310.1 ID=mRNA_M-pyrifera_M_contig115953.3310.1|Name=mRNA_M-pyrifera_M_contig115953.3310.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig115953:256..438+ (Macrocystis pyrifera P11B4 male)
ATGAAGCCGCTGCTGGACGACGATTTCGTAGCTTACATGGGCTACGCGAT
CATGCAGGAGCGAGAAGAGATCGTCAAGAGCGGCCTGGACCCGGATCGTG
AGCCGACGAGGTGGCTCCAGGTTTTGGGCGTGATCCAGAAAGGGGTGATG
GCGGAGCTGCAAAAGAGCGTCTACGAAGATGTCATGAAGCCGCTGCTGGA
CGACGATTTCGTAGCTTACATGGGCTACGCGATCATGCAGGAGCGAGAAG
AGATCGTCAAGAGCGGCCTGGACCCGGATCGTGAGCCGACGAGGTGGCTC
CAGGTTTTGGGCGTGATCCAGAAAGGGGTGATGGCGGAGCTGCAAAAGAG
CGTCTACGAAGATGTC
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