mRNA_M-pyrifera_M_contig115882.3298.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115882.3298.1
Unique NamemRNA_M-pyrifera_M_contig115882.3298.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115882.3298.1 vs. uniprot
Match: A0A6S7GUI7_PARCT (Reverse transcriptase domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GUI7_PARCT)

HSP 1 Score: 80.5 bits (197), Expect = 5.550e-15
Identity = 43/132 (32.58%), Postives = 74/132 (56.06%), Query Frame = 1 
Query:    1 IDPNQEPVYT--RSRPIRKEEYERTMDTINGWNEKGWIKKLDKPNKWCSSVINVPKKSGGKVEGNKLRTCIDGRPVNKVCKGAEYNLPTAEQMFKKVQGYQIFSEFDISSAFMQIPMSKEAGLAYGFVAPNG 390
            +DP   PV +  RS P+   E  R   +++   EKG ++K+D P +W +S + + K +      +KLR C+D RP+N+  K   + +PT E++  +V G ++FS+ D +  + QIP+ +E+ L   F  P G
Sbjct:  421 VDPTITPVVSPLRSTPVALRE--RLRSSLDDMEEKGVVEKVDGPTEWVNSTVIIEKPNS-----DKLRICLDPRPLNEAIKREHFKMPTIEEITTRVAGARVFSKLDANHGYWQIPLDEESRLLTTFNTPFG 545
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BLAST of mRNA_M-pyrifera_M_contig115882.3298.1 vs. uniprot
Match: A0A7D9HG49_PARCT (Transposon Ty3-G Gag-Pol poly n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG49_PARCT)

HSP 1 Score: 79.7 bits (195), Expect = 1.110e-14
Identity = 43/132 (32.58%), Postives = 74/132 (56.06%), Query Frame = 1 
Query:    1 IDPNQEPVYT--RSRPIRKEEYERTMDTINGWNEKGWIKKLDKPNKWCSSVINVPKKSGGKVEGNKLRTCIDGRPVNKVCKGAEYNLPTAEQMFKKVQGYQIFSEFDISSAFMQIPMSKEAGLAYGFVAPNG 390
            +DP   PV +  RS P+   E  R   +++   EKG ++K+D P +W +S + + K +      +KLR C+D RP+N+  K   + +PT E++  +V G ++FS+ D +  + QIP+ +E+ L   F  P G
Sbjct:  382 VDPTIIPVVSPLRSTPVALRE--RLRSSLDDMEEKGVVEKVDGPTEWVNSTVIIEKPNS-----DKLRICLDPRPLNEAIKREHFKMPTIEEITTRVAGARVFSKLDANHGYWQIPLDEESRLLTTFNTPFG 506
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BLAST of mRNA_M-pyrifera_M_contig115882.3298.1 vs. uniprot
Match: A0A6S7G1T5_PARCT (Retrotransposon-like family member retr-1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G1T5_PARCT)

HSP 1 Score: 79.3 bits (194), Expect = 1.420e-14
Identity = 43/132 (32.58%), Postives = 73/132 (55.30%), Query Frame = 1 
Query:    1 IDPNQEPVYT--RSRPIRKEEYERTMDTINGWNEKGWIKKLDKPNKWCSSVINVPKKSGGKVEGNKLRTCIDGRPVNKVCKGAEYNLPTAEQMFKKVQGYQIFSEFDISSAFMQIPMSKEAGLAYGFVAPNG 390
            +DP   PV +  RS P+   E  R   +++   EKG ++K+D P +W +S + + K +      +KLR C+D RP+N   K   + +PT E++  +V G ++FS+ D +  + QIP+ +E+ L   F  P G
Sbjct:  372 VDPTITPVVSPLRSTPVALRE--RLRSSLDDMEEKGVVEKVDGPTEWVNSTVIIEKPNS-----DKLRICLDPRPLNGAIKREHFKMPTIEEITTRVAGARVFSKLDANHGYWQIPLDEESRLLTTFNTPFG 496
[Close]
BLAST of mRNA_M-pyrifera_M_contig115882.3298.1 vs. uniprot
Match: A0A6S7K248_PARCT (Uncharacterized protein (Fragment) n=5 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K248_PARCT)

HSP 1 Score: 76.6 bits (187), Expect = 1.190e-13
Identity = 42/132 (31.82%), Postives = 74/132 (56.06%), Query Frame = 1 
Query:    1 IDPNQEPVYT--RSRPIRKEEYERTMDTINGWNEKGWIKKLDKPNKWCSSVINVPKKSGGKVEGNKLRTCIDGRPVNKVCKGAEYNLPTAEQMFKKVQGYQIFSEFDISSAFMQIPMSKEAGLAYGFVAPNG 390
            +DP   PV +  RS P+   E  R++  ++   EKG ++K+D P +W +S + + K +      +KLR C+D RP+N+  K   + +PT E++  +V   ++FS+ D +  + QIP+ +E+ L   F  P G
Sbjct:  384 VDPTITPVVSPLRSTPVALRERLRSL--LDDMEEKGVVEKVDGPTEWVNSTVIIEKPNS-----DKLRICLDPRPLNEAIKREHFKMPTIEEITTRVARARVFSKLDANHGYWQIPLDEESRLLTTFNTPFG 508
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BLAST of mRNA_M-pyrifera_M_contig115882.3298.1 vs. uniprot
Match: UPI001CF20579 (uncharacterized protein K02A2.6-like n=3 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF20579)

HSP 1 Score: 73.2 bits (178), Expect = 2.110e-12
Identity = 43/125 (34.40%), Postives = 67/125 (53.60%), Query Frame = 1 
Query:    1 IDPNQEPVYTRSRPIRKEEYERTMDTINGWNEKGWIKKLDKPNKWCSSVINVPKKSGGKVEGNKLRTCIDGRPVNKVCKGAEYNLPTAEQMFKKVQGYQIFSEFDISSAFMQIPMSKEAGLAYGF 375
            ++P+ +PV +  R I      R    ++   ++G I  +D P  W ++++ V KK+      +KLR CID RP+NK  K   Y LPT EQ+  ++ G + FS  D  S F QIP+ +E+ L   F
Sbjct:   58 LNPDIQPVVSPPRRIPYGLEGRVKAALDEMCDQGVIVPVDHPTDWVNAMVAVEKKNT-----DKLRICIDPRPLNKAIKREHYYLPTIEQITTRLSGAKYFSTLDARSGFWQIPLDEESSLLTTF 177
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BLAST of mRNA_M-pyrifera_M_contig115882.3298.1 vs. uniprot
Match: UPI001CF50C18 (uncharacterized protein K02A2.6-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF50C18)

HSP 1 Score: 73.2 bits (178), Expect = 2.170e-12
Identity = 43/125 (34.40%), Postives = 67/125 (53.60%), Query Frame = 1 
Query:    1 IDPNQEPVYTRSRPIRKEEYERTMDTINGWNEKGWIKKLDKPNKWCSSVINVPKKSGGKVEGNKLRTCIDGRPVNKVCKGAEYNLPTAEQMFKKVQGYQIFSEFDISSAFMQIPMSKEAGLAYGF 375
            ++P+ +PV +  R I      R    ++   ++G I  +D P  W ++++ V KK+      +KLR CID RP+NK  K   Y LPT EQ+  ++ G + FS  D  S F QIP+ +E+ L   F
Sbjct:  446 LNPDIQPVVSPPRRIPYGLEGRVKAALDEMCDQGVIVPVDHPTDWVNAMVAVEKKNT-----DKLRICIDPRPLNKAIKREHYYLPTIEQITTRLSGAKYFSTLDARSGFWQIPLDEESSLLTTF 565
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BLAST of mRNA_M-pyrifera_M_contig115882.3298.1 vs. uniprot
Match: A0A4Y2HII9_ARAVE (Uncharacterized protein n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HII9_ARAVE)

HSP 1 Score: 68.2 bits (165), Expect = 2.260e-12
Identity = 33/97 (34.02%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:  100 GWIKKLDKPNKWCSSVINVPKKSGGKVEGNKLRTCIDGRPVNKVCKGAEYNLPTAEQMFKKVQGYQIFSEFDISSAFMQIPMSKEAGLAYGFVAPNG 390
            G I K++KP +W S+++ +          NKLR CID RP+N+  K   Y +P+A ++   +QG  +FS FD ++ F Q+ + +E+     F  P G
Sbjct:    5 GVITKVEKPTEWVSNIVVID-------NPNKLRICIDPRPLNEAIKIPHYPIPSAYRLMTNLQGSTVFSLFDATNGFWQLALDEESSYLTTFATPWG 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig115882.3298.1 vs. uniprot
Match: A0A7D9KEZ9_PARCT (Reverse transcriptase domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KEZ9_PARCT)

HSP 1 Score: 71.6 bits (174), Expect = 6.870e-12
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 1 
Query:  100 GWIKKLDKPNKWCSSVINVPKKSGGKVEGNKLRTCIDGRPVNKVCKGAEYNLPTAEQMFKKVQGYQIFSEFDISSAFMQIPMSKEAGLAYGFVAPNGDH 396
            G I  +D+P  W ++++ V KK+      +KLR CID RP+NK  K   Y+LPT E++  ++ G + FS  D  S F QIP+ +E+     F  P G +
Sbjct:  291 GIIVAVDQPTDWVNAMVVVEKKNT-----DKLRICIDPRPLNKAIKREHYHLPTIEEITTRLSGAKYFSTLDARSGFWQIPLDEESSYLTTFGTPFGKY 384
[Close]
BLAST of mRNA_M-pyrifera_M_contig115882.3298.1 vs. uniprot
Match: A0A4Y2A6Y4_ARAVE (Uncharacterized protein K02A2.6 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2A6Y4_ARAVE)

HSP 1 Score: 71.6 bits (174), Expect = 7.070e-12
Identity = 37/127 (29.13%), Postives = 65/127 (51.18%), Query Frame = 1 
Query:   10 NQEPVYTRSRPIRKEEYERTMDTINGWNEKGWIKKLDKPNKWCSSVINVPKKSGGKVEGNKLRTCIDGRPVNKVCKGAEYNLPTAEQMFKKVQGYQIFSEFDISSAFMQIPMSKEAGLAYGFVAPNG 390
            N  P    +R I    +++    +N     G I K+++P +W S+++ +          NKLR CID RP+N+  K   Y +P+A+++   +QG  +FS FD ++ F Q+ + +E+     F  P G
Sbjct:  481 NYAPSVAAARKIPLALHDKVKAELNRMENMGVITKVEQPTEWVSNIVVID-------NPNKLRICIDPRPLNEAIKIPHYPIPSADRLMTNLQGSTVFSLFDATNGFWQLALDEESSYLTTFATPWG 600
[Close]
BLAST of mRNA_M-pyrifera_M_contig115882.3298.1 vs. uniprot
Match: A0A4Y2DJZ7_ARAVE (Retrovirus-related Pol polyprotein from transposon 17.6 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2DJZ7_ARAVE)

HSP 1 Score: 70.1 bits (170), Expect = 2.490e-11
Identity = 37/127 (29.13%), Postives = 64/127 (50.39%), Query Frame = 1 
Query:   10 NQEPVYTRSRPIRKEEYERTMDTINGWNEKGWIKKLDKPNKWCSSVINVPKKSGGKVEGNKLRTCIDGRPVNKVCKGAEYNLPTAEQMFKKVQGYQIFSEFDISSAFMQIPMSKEAGLAYGFVAPNG 390
            N  P    +R I    +++    +N     G I K+++P +W S+++ +          NKLR CID RP+N+  K   Y +P+A ++   +QG  +FS FD ++ F Q+ + +E+     F  P G
Sbjct:  322 NYTPSVAAARKIPLALHDKVKAELNRMENMGVITKVEQPTEWVSNIVVID-------NPNKLRICIDPRPLNEAIKIPHYPIPSAGRLMTNLQGSTVFSLFDATNGFWQLALDEESSYLTTFATPWG 441
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115882.3298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S7GUI7_PARCT5.550e-1532.58Reverse transcriptase domain-containing protein n=... [more]
A0A7D9HG49_PARCT1.110e-1432.58Transposon Ty3-G Gag-Pol poly n=3 Tax=Paramuricea ... [more]
A0A6S7G1T5_PARCT1.420e-1432.58Retrotransposon-like family member retr-1 n=1 Tax=... [more]
A0A6S7K248_PARCT1.190e-1331.82Uncharacterized protein (Fragment) n=5 Tax=Paramur... [more]
UPI001CF205792.110e-1234.40uncharacterized protein K02A2.6-like n=3 Tax=Acrop... [more]
UPI001CF50C182.170e-1234.40uncharacterized protein K02A2.6-like n=1 Tax=Acrop... [more]
A0A4Y2HII9_ARAVE2.260e-1234.02Uncharacterized protein n=2 Tax=Araneus ventricosu... [more]
A0A7D9KEZ9_PARCT6.870e-1237.37Reverse transcriptase domain-containing protein n=... [more]
A0A4Y2A6Y4_ARAVE7.070e-1229.13Uncharacterized protein K02A2.6 (Fragment) n=1 Tax... [more]
A0A4Y2DJZ7_ARAVE2.490e-1129.13Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115882contigM-pyrifera_M_contig115882:81..491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score75.5
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog400682.PAC_15724566
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc finger
EggNOG OGs39UIR@33154,3BN16@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.421855-CDS-M-pyrifera_M_contig115882:80..4911622815675.421855-CDS-M-pyrifera_M_contig115882:80..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115882 81..491 -
1692277516.378571-CDS-M-pyrifera_M_contig115882:80..4911692277516.378571-CDS-M-pyrifera_M_contig115882:80..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115882 81..491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115882.3298.1prot_M-pyrifera_M_contig115882.3298.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115882 81..491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115882.3298.1

>prot_M-pyrifera_M_contig115882.3298.1 ID=prot_M-pyrifera_M_contig115882.3298.1|Name=mRNA_M-pyrifera_M_contig115882.3298.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
IDPNQEPVYTRSRPIRKEEYERTMDTINGWNEKGWIKKLDKPNKWCSSVI
NVPKKSGGKVEGNKLRTCIDGRPVNKVCKGAEYNLPTAEQMFKKVQGYQI
FSEFDISSAFMQIPMSKEAGLAYGFVAPNGDHYSIF*
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mRNA from alignment at M-pyrifera_M_contig115882:81..491-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115882.3298.1 ID=mRNA_M-pyrifera_M_contig115882.3298.1|Name=mRNA_M-pyrifera_M_contig115882.3298.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig115882:81..491- (Macrocystis pyrifera P11B4 male)
ATTGATCCCAATCAAGAACCTGTGTACACAAGGTCAAGACCAATAAGGAA
GGAGGAGTATGAAAGAACAATGGATACTATAAATGGGTGGAATGAAAAAG
GGTGGATAAAGAAATTGGATAAACCAAATAAGTGGTGTTCATCAGTGATC
AATGTCCCAAAGAAATCTGGTGGGAAAGTGGAAGGAAACAAATTAAGGAC
ATGTATTGATGGAAGACCAGTTAATAAGGTATGTAAAGGGGCAGAATATA
ATTTACCAACTGCTGAACAAATGTTTAAGAAGGTGCAAGGTTATCAAATA
TTTTCTGAATTTGATATATCATCTGCATTTATGCAAATACCTATGAGTAA
AGAAGCTGGGTTGGCTTATGGATTTGTGGCACCAAATGGGGATCATTATA
GTATATTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115882:81..491-

>mRNA_M-pyrifera_M_contig115882.3298.1 ID=mRNA_M-pyrifera_M_contig115882.3298.1|Name=mRNA_M-pyrifera_M_contig115882.3298.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig115882:81..491- (Macrocystis pyrifera P11B4 male)
ATTGATCCCAATCAAGAACCTGTGTACACAAGGTCAAGACCAATAAGGAA
GGAGGAGTATGAAAGAACAATGGATACTATAAATGGGTGGAATGAAAAAG
GGTGGATAAAGAAATTGGATAAACCAAATAAGTGGTGTTCATCAGTGATC
AATGTCCCAAAGAAATCTGGTGGGAAAGTGGAAGGAAACAAATTAAGGAC
ATGTATTGATGGAAGACCAGTTAATAAGGTATGTAAAGGGGCAGAATATA
ATTTACCAACTGCTGAACAAATGTTTAAGAAGGTGCAAGGTTATCAAATA
TTTTCTGAATTTGATATATCATCTGCATTTATGCAAATACCTATGAGTAA
AGAAGCTGGGTTGGCTTATGGATTTGTGGCACCAAATGGGGATCATTATA
GTATATTCTAAATTGATCCCAATCAAGAACCTGTGTACACAAGGTCAAGA
CCAATAAGGAAGGAGGAGTATGAAAGAACAATGGATACTATAAATGGGTG
GAATGAAAAAGGGTGGATAAAGAAATTGGATAAACCAAATAAGTGGTGTT
CATCAGTGATCAATGTCCCAAAGAAATCTGGTGGGAAAGTGGAAGGAAAC
AAATTAAGGACATGTATTGATGGAAGACCAGTTAATAAGGTATGTAAAGG
GGCAGAATATAATTTACCAACTGCTGAACAAATGTTTAAGAAGGTGCAAG
GTTATCAAATATTTTCTGAATTTGATATATCATCTGCATTTATGCAAATA
CCTATGAGTAAAGAAGCTGGGTTGGCTTATGGATTTGTGGCACCAAATGG
GGATCATTATAGTATATTCTAA
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