mRNA_M-pyrifera_M_contig115874.3297.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A3A9JBK8_9PROT (DNA-binding protein n=1 Tax=Roseomonas wenyumeiae TaxID=2478470 RepID=A0A3A9JBK8_9PROT) HSP 1 Score: 57.8 bits (138), Expect = 9.490e-10 Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 13 PTNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKRRRG 186
P+ T+ +A LAVS +++RRWI +++L HRLGR +RIAE DL+AF R+RG
Sbjct: 5 PSRSAPLLTLAAAAARLAVSTKTLRRWIAAEQLRVHRLGRQIRIAEEDLQAFLARQRG 62
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A7Z9KFP6_9PROT (DNA-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Z9KFP6_9PROT) HSP 1 Score: 55.5 bits (132), Expect = 8.960e-9 Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 37 TVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAF-RKRRRG 186
T+KQ + L VS++++RRWI + +L+AHRLGR RI+E+DL+ F R RR+G
Sbjct: 18 TIKQAAEHLQVSSKTLRRWIDTGDLIAHRLGRQWRISETDLQTFIRMRRQG 68
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: UPI0018DF5014 (helix-turn-helix domain-containing protein n=1 Tax=Roseomonas sp. KE0001 TaxID=2479201 RepID=UPI0018DF5014) HSP 1 Score: 53.1 bits (126), Expect = 6.370e-8 Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 37 TVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKRRR 183
T+ +++A LAVS +++RRWI ++L HRLGR +R+AE DL+ F RR
Sbjct: 13 TLVEVAARLAVSTKTLRRWIALEQLRIHRLGRQIRVAEEDLQTFLASRR 61
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A1G7FYI4_9RHOB (DNA binding domain-containing protein, excisionase family n=1 Tax=Ruegeria marina TaxID=639004 RepID=A0A1G7FYI4_9RHOB) HSP 1 Score: 51.6 bits (122), Expect = 3.120e-7 Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 7 PMPTNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEA 165
P P N TF +VK+++A V ++VRRWIQS EL A RLGR RIA ++L+A
Sbjct: 5 PFPAN-ATFLSVKEVAALFRVCPKTVRRWIQSGELPATRLGRDWRIARNNLKA 56
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: UPI001A95AB19 (helix-turn-helix domain-containing protein n=1 Tax=Roseomonas haemaphysalidis TaxID=2768162 RepID=UPI001A95AB19) HSP 1 Score: 50.1 bits (118), Expect = 9.590e-7 Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1
Query: 37 TVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAF 168
TV Q++ LA+S ++VRRWI L AH++GR +RI+E DL+ F
Sbjct: 9 TVDQVAEHLAISTKTVRRWIADGRLNAHQIGRQLRISERDLQVF 52
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A0M5IIH1_SPHS1 (DNA binding domain protein, excisionase family n=1 Tax=Sphingopyxis sp. (strain 113P3) TaxID=292913 RepID=A0A0M5IIH1_SPHS1) HSP 1 Score: 50.4 bits (119), Expect = 1.150e-6 Identity = 22/58 (37.93%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 4 SPMPTNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKR 177
+P+P+ + F+TV +++ ++S R +RR I + ELVAHR+GR+VR++ +++ F R
Sbjct: 19 APLPSGRKAFYTVAELAVRWSLSERHIRRLIDNGELVAHRIGRAVRVSAANVALFEAR 76
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A4S4A967_9HYPH (Helix-turn-helix domain-containing protein n=2 Tax=Mesorhizobium composti TaxID=2675109 RepID=A0A4S4A967_9HYPH) HSP 1 Score: 50.4 bits (119), Expect = 1.530e-6 Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 25 ETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKRRR 183
E FFT+KQ++ VS R V R++ S LVAH+ GRS+RIAE ++ F R R
Sbjct: 42 EQFFTIKQLAKRWQVSERQVHRFVHSGVLVAHKFGRSLRIAEDNVLLFELRSR 94
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: UPI001C49D900 (helix-turn-helix domain-containing protein n=1 Tax=Sinirhodobacter sp. B57 TaxID=2851012 RepID=UPI001C49D900) HSP 1 Score: 47.0 bits (110), Expect = 1.810e-5 Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 1
Query: 16 TNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAF 168
T PE T+ + + L VS +S+RRWI+S EL A +LG RI DL+ F
Sbjct: 7 TTPEQLLTIPEAAELLRVSIKSIRRWIESGELSAAKLGNQWRIRPQDLDRF 57
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: E3I1L0_RHOVT (DNA binding domain protein, excisionase family n=4 Tax=Rhodomicrobium TaxID=1068 RepID=E3I1L0_RHOVT) HSP 1 Score: 47.0 bits (110), Expect = 1.930e-5 Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1
Query: 31 FFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKRRR 183
FFTV +++A +SAR VRR I+S L AHR G+S+RIA + + RR
Sbjct: 16 FFTVNELAARWGMSARHVRREIESGALQAHRFGKSIRIAAESVAIYEATRR 66
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A7V9N1E8_9CHLR (Helix-turn-helix domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9N1E8_9CHLR) HSP 1 Score: 47.4 bits (111), Expect = 9.770e-5 Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1
Query: 34 FTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAF 168
FTVK+ + L VS +VRR+I S EL AHR+GR +R+ D+E F
Sbjct: 10 FTVKETAQMLRVSPITVRRYIASGELSAHRVGRGIRVKRQDVEDF 54 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig115874.3297.1 >prot_M-pyrifera_M_contig115874.3297.1 ID=prot_M-pyrifera_M_contig115874.3297.1|Name=mRNA_M-pyrifera_M_contig115874.3297.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp MPTNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLback to top mRNA from alignment at M-pyrifera_M_contig115874:10..198+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig115874.3297.1 ID=mRNA_M-pyrifera_M_contig115874.3297.1|Name=mRNA_M-pyrifera_M_contig115874.3297.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig115874:10..198+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig115874:10..198+ >mRNA_M-pyrifera_M_contig115874.3297.1 ID=mRNA_M-pyrifera_M_contig115874.3297.1|Name=mRNA_M-pyrifera_M_contig115874.3297.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig115874:10..198+ (Macrocystis pyrifera P11B4 male)back to top |