mRNA_M-pyrifera_M_contig115868.3296.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115868.3296.1
Unique NamemRNA_M-pyrifera_M_contig115868.3296.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115868.3296.1 vs. uniprot
Match: A0A813CYG8_9DINO (DREB2A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CYG8_9DINO)

HSP 1 Score: 87.0 bits (214), Expect = 3.450e-20
Identity = 36/48 (75.00%), Postives = 45/48 (93.75%), Query Frame = 1
Query:   97 RRFSSPFFGVSWHKSSERWAVQIRHEGKRIHVGYYVDEVAAAKAYDEV 240
            +RFSSP++GVSWH+SS+RWAVQIRH G+R+HVGY+VDEV AAK +DEV
Sbjct:   21 KRFSSPYYGVSWHRSSQRWAVQIRHGGRRLHVGYFVDEVEAAKGFDEV 68          
BLAST of mRNA_M-pyrifera_M_contig115868.3296.1 vs. uniprot
Match: A0A7S1CQX8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQX8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.240e-13
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 1
Query:  115 FFGVSWHKSSERWAVQIRHEGKRIHVGYYVDEVAAAKAYDEV 240
            + GVSWHK S+RWAVQIR+ GKR+HVGY+ DE++AA AYD V
Sbjct:   50 YHGVSWHKRSQRWAVQIRNNGKRLHVGYFGDELSAALAYDRV 91          
BLAST of mRNA_M-pyrifera_M_contig115868.3296.1 vs. uniprot
Match: Q4TZV1_9CAUD (RB16 HNH(AP2) 2 n=2 Tax=Escherichia virus RB16 TaxID=329381 RepID=Q4TZV1_9CAUD)

HSP 1 Score: 60.8 bits (146), Expect = 2.380e-9
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query:  106 SSPFFGVSWHKSSERWAVQIRHEGKRIHVGYYVDEVAAAKAYDEVRVEGGRGWCR 270
            SS + GVSW KS+ +W V I+H  K+IH+GY+ DEV AAKAYD   +E G  + R
Sbjct:  126 SSTYKGVSWDKSTCKWKVGIQHNKKKIHLGYFDDEVEAAKAYDAKAIEIGGQYAR 180          
BLAST of mRNA_M-pyrifera_M_contig115868.3296.1 vs. uniprot
Match: A0A1G3A099_9BACT (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium RBG_16_55_9 TaxID=1801968 RepID=A0A1G3A099_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 2.310e-7
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1
Query:  106 SSPFFGVSWHKSSERWAVQIRHEGKRIHVGYYVDEVAAAKAYDE 237
            +S + GV WHK   +WA  IR   +  H+GY+ DE AAA+AYDE
Sbjct:   86 TSKYKGVHWHKGRRKWAAAIRFHNRTTHLGYFTDEAAAARAYDE 129          
BLAST of mRNA_M-pyrifera_M_contig115868.3296.1 vs. uniprot
Match: UPI000F81B697 (HNH endonuclease n=1 Tax=Pseudomonas veronii TaxID=76761 RepID=UPI000F81B697)

HSP 1 Score: 54.7 bits (130), Expect = 3.240e-7
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 1
Query:  106 SSPFFGVSWHKSSERWAVQIRHEGKRIHVGYYVDEVAAAKAYDEVRVE 249
            SS + GV+W K  +RW   IR  GKR ++GY+ DE+ AAKAY+   +E
Sbjct:   97 SSVYKGVAWLKGCKRWMAYIRKSGKRTYLGYFTDEIEAAKAYNRAAIE 144          
BLAST of mRNA_M-pyrifera_M_contig115868.3296.1 vs. uniprot
Match: A0A7S2VVD8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas chlamydogama TaxID=225041 RepID=A0A7S2VVD8_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 3.400e-7
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   94 DRRFSSP--FFGVSWHKSSERWAVQIRHEGKRIHVGYYVDEVAAAKAYD 234
            D R S P  + GV+WHK++ RW  Q+ ++GK++H+GY++DE  AA  YD
Sbjct:  197 DGRISHPSSYRGVTWHKATNRWQAQLCYDGKKVHLGYFLDEKEAALVYD 245          
BLAST of mRNA_M-pyrifera_M_contig115868.3296.1 vs. uniprot
Match: A0A1E7Z2R3_9GAMM (Uncharacterized protein n=2 Tax=Candidatus Erwinia dacicola TaxID=252393 RepID=A0A1E7Z2R3_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 5.140e-7
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 1
Query:  121 GVSWHKSSERWAVQIRHEGKRIHVGYYVDEVAAAKAYDEVRVE 249
            GVSW K  ++W   I HEGK IHVGY+++++ AA+A ++VR E
Sbjct:  112 GVSWCKEMKKWRAGIMHEGKHIHVGYFIEKIEAAEAIEKVRNE 154          
BLAST of mRNA_M-pyrifera_M_contig115868.3296.1 vs. uniprot
Match: A0A0K1LP53_9CAUD (Homing endonuclease n=2 Tax=Slopekvirus TaxID=1985328 RepID=A0A0K1LP53_9CAUD)

HSP 1 Score: 53.9 bits (128), Expect = 6.480e-7
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1
Query:  106 SSPFFGVSWHKSSERWAVQIRHEGKRIHVGYYVDEVAAAKAYDEVRVE 249
            SS + GVSW K + +W V I++  K+IH+GY+ DE+ AAKAYD   +E
Sbjct:  102 SSIYKGVSWDKPTCKWKVGIQYNRKKIHLGYFDDEIEAAKAYDAKAIE 149          
BLAST of mRNA_M-pyrifera_M_contig115868.3296.1 vs. uniprot
Match: A0A3D3USZ5_9BACT (Endonuclease n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3D3USZ5_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 7.630e-7
Identity = 22/44 (50.00%), Postives = 35/44 (79.55%), Query Frame = 1
Query:  106 SSPFFGVSWHKSSERWAVQIRHEGKRIHVGYYVDEVAAAKAYDE 237
            SS + GVSW++  ++W+VQIR+EGK   +G++ +E+ AAKAYD+
Sbjct:  112 SSKYKGVSWNRYKKKWSVQIRYEGKSKFIGFFDNEIDAAKAYDK 155          
BLAST of mRNA_M-pyrifera_M_contig115868.3296.1 vs. uniprot
Match: A0A7S2U1K7_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U1K7_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 4.060e-6
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   97 RRFSSPFFGVSWHKSSERWAVQIRHEGKRIHVGYYVDEVAAAKAYD 234
            R+ +S + GVS+H +  +W V+IR  GK+ H+GY+ DEV AA+AY+
Sbjct:  208 RKVTSKYIGVSYHSNRGKWQVKIRSNGKQKHLGYFDDEVEAARAYN 253          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115868.3296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A813CYG8_9DINO3.450e-2075.00DREB2A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A7S1CQX8_9STRA6.240e-1369.05Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
Q4TZV1_9CAUD2.380e-952.73RB16 HNH(AP2) 2 n=2 Tax=Escherichia virus RB16 Tax... [more]
A0A1G3A099_9BACT2.310e-750.00AP2/ERF domain-containing protein (Fragment) n=1 T... [more]
UPI000F81B6973.240e-747.92HNH endonuclease n=1 Tax=Pseudomonas veronii TaxID... [more]
A0A7S2VVD8_9CHLO3.400e-746.94Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A1E7Z2R3_9GAMM5.140e-751.16Uncharacterized protein n=2 Tax=Candidatus Erwinia... [more]
A0A0K1LP53_9CAUD6.480e-750.00Homing endonuclease n=2 Tax=Slopekvirus TaxID=1985... [more]
A0A3D3USZ5_9BACT7.630e-750.00Endonuclease n=1 Tax=Phycisphaerales bacterium Tax... [more]
A0A7S2U1K7_9EUKA4.060e-647.83Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115868contigM-pyrifera_M_contig115868:12..281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score60.8
Seed ortholog evalue3.7e-07
Seed eggNOG ortholog329381.Q4TZV1_9CAUD
Hectar predicted targeting categoryother localisation
EggNOG free text desc.HNH endonuclease
EggNOG OGs4QPDE@28883
COG Functional cat.S
Best tax levelCaudovirales
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.3441286-CDS-M-pyrifera_M_contig115868:11..2811622815675.3441286-CDS-M-pyrifera_M_contig115868:11..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115868 12..281 -
1692277516.3316252-CDS-M-pyrifera_M_contig115868:11..2811692277516.3316252-CDS-M-pyrifera_M_contig115868:11..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115868 12..281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115868.3296.1prot_M-pyrifera_M_contig115868.3296.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115868 12..281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115868.3296.1

>prot_M-pyrifera_M_contig115868.3296.1 ID=prot_M-pyrifera_M_contig115868.3296.1|Name=mRNA_M-pyrifera_M_contig115868.3296.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
TGASSGGRGARGGRRGRRARAPASTGTGSGEDRRFSSPFFGVSWHKSSER
WAVQIRHEGKRIHVGYYVDEVAAAKAYDEVRVEGGRGWCR
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mRNA from alignment at M-pyrifera_M_contig115868:12..281-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115868.3296.1 ID=mRNA_M-pyrifera_M_contig115868.3296.1|Name=mRNA_M-pyrifera_M_contig115868.3296.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig115868:12..281- (Macrocystis pyrifera P11B4 male)
ACTGGAGCTTCGAGTGGTGGAAGAGGCGCTAGGGGAGGCCGAAGGGGGCG GCGCGCACGTGCGCCTGCAAGTACTGGGACTGGCAGTGGTGAAGATCGCC GGTTTTCTTCTCCATTCTTCGGGGTGTCATGGCATAAGAGCTCAGAGCGA TGGGCTGTTCAGATTCGACATGAAGGAAAGCGTATTCACGTTGGGTACTA TGTGGATGAAGTGGCAGCTGCCAAGGCCTACGATGAGGTACGGGTTGAAG GGGGTAGGGGTTGGTGTAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115868:12..281-

>mRNA_M-pyrifera_M_contig115868.3296.1 ID=mRNA_M-pyrifera_M_contig115868.3296.1|Name=mRNA_M-pyrifera_M_contig115868.3296.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig115868:12..281- (Macrocystis pyrifera P11B4 male)
ACTGGAGCTTCGAGTGGTGGAAGAGGCGCTAGGGGAGGCCGAAGGGGGCG
GCGCGCACGTGCGCCTGCAAGTACTGGGACTGGCAGTGGTGAAGATCGCC
GGTTTTCTTCTCCATTCTTCGGGGTGTCATGGCATAAGAGCTCAGAGCGA
TGGGCTGTTCAGATTCGACATGAAGGAAAGCGTATTCACGTTGGGTACTA
TGTGGATGAAGTGGCAGCTGCCAAGGCCTACGATGAGGTACGGGTTGAAG
GGGGTAGGGGTTGGTGTAGGACTGGAGCTTCGAGTGGTGGAAGAGGCGCT
AGGGGAGGCCGAAGGGGGCGGCGCGCACGTGCGCCTGCAAGTACTGGGAC
TGGCAGTGGTGAAGATCGCCGGTTTTCTTCTCCATTCTTCGGGGTGTCAT
GGCATAAGAGCTCAGAGCGATGGGCTGTTCAGATTCGACATGAAGGAAAG
CGTATTCACGTTGGGTACTATGTGGATGAAGTGGCAGCTGCCAAGGCCTA
CGATGAGGTACGGGTTGAAGGGGGTAGGGGTTGGTGTAGG
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