mRNA_M-pyrifera_M_contig115865.3295.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115865.3295.1
Unique NamemRNA_M-pyrifera_M_contig115865.3295.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115865.3295.1 vs. uniprot
Match: A0A842WJH4_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Micrarchaeota archaeon TaxID=2250274 RepID=A0A842WJH4_9ARCH)

HSP 1 Score: 52.8 bits (125), Expect = 2.060e-6
Identity = 28/42 (66.67%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   16 DRLISAGADVNAADSAGWTPLMNAASMGKAEFCTKLLASGAD 141
            +RLI AGADVNA D  GWTPLMNAA  G AE    LL  GAD
Sbjct:  247 ERLIEAGADVNAVDGLGWTPLMNAARKGHAEMVELLLDQGAD 288
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115865.3295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A842WJH4_9ARCH2.060e-666.67Uncharacterized protein n=1 Tax=Candidatus Micrarc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115865contigM-pyrifera_M_contig115865:371..562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.3080146-CDS-M-pyrifera_M_contig115865:370..5621622815675.3080146-CDS-M-pyrifera_M_contig115865:370..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115865 371..562 -
1692277516.321411-CDS-M-pyrifera_M_contig115865:370..5621692277516.321411-CDS-M-pyrifera_M_contig115865:370..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115865 371..562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115865.3295.1prot_M-pyrifera_M_contig115865.3295.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115865 371..562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115865.3295.1

>prot_M-pyrifera_M_contig115865.3295.1 ID=prot_M-pyrifera_M_contig115865.3295.1|Name=mRNA_M-pyrifera_M_contig115865.3295.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
SLSLLDRLISAGADVNAADSAGWTPLMNAASMGKAEFCTKLLASGADVNM
STGPPHHWTALARA
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mRNA from alignment at M-pyrifera_M_contig115865:371..562-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115865.3295.1 ID=mRNA_M-pyrifera_M_contig115865.3295.1|Name=mRNA_M-pyrifera_M_contig115865.3295.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig115865:371..562- (Macrocystis pyrifera P11B4 male)
TCTCTTTCTTTGCTTGATCGGTTGATTTCTGCGGGAGCAGATGTGAATGC
GGCGGATTCGGCTGGTTGGACCCCTCTGATGAACGCTGCGTCGATGGGGA
AAGCCGAGTTTTGTACGAAACTCCTTGCATCTGGTGCAGATGTGAACATG
AGCACAGGCCCGCCACACCACTGGACTGCGCTGGCAAGAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115865:371..562-

>mRNA_M-pyrifera_M_contig115865.3295.1 ID=mRNA_M-pyrifera_M_contig115865.3295.1|Name=mRNA_M-pyrifera_M_contig115865.3295.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig115865:371..562- (Macrocystis pyrifera P11B4 male)
TCTCTTTCTTTGCTTGATCGGTTGATTTCTGCGGGAGCAGATGTGAATGC
GGCGGATTCGGCTGGTTGGACCCCTCTGATGAACGCTGCGTCGATGGGGA
AAGCCGAGTTTTGTACGAAACTCCTTGCATCTGGTGCAGATGTGAACATG
AGCACAGGCCCGCCACACCACTGGACTGCGCTGGCAAGAGCATCTCTTTC
TTTGCTTGATCGGTTGATTTCTGCGGGAGCAGATGTGAATGCGGCGGATT
CGGCTGGTTGGACCCCTCTGATGAACGCTGCGTCGATGGGGAAAGCCGAG
TTTTGTACGAAACTCCTTGCATCTGGTGCAGATGTGAACATGAGCACAGG
CCCGCCACACCACTGGACTGCGCTGGCAAGAGCA
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