mRNA_M-pyrifera_M_contig115853.3289.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115853.3289.1
Unique NamemRNA_M-pyrifera_M_contig115853.3289.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115853.3289.1 vs. uniprot
Match: A0A538CSB1_9ACTN (DUF2510 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CSB1_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 7.260e-8
Identity = 21/30 (70.00%), Postives = 22/30 (73.33%), Query Frame = 1 
Query:   16 EKGWHPDPTERHELRWHDGSEWTHHVADGG 105
            E GW PDP  RHELRWHDG  WT HV+D G
Sbjct:    2 EPGWQPDPARRHELRWHDGENWTVHVSDNG 31
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BLAST of mRNA_M-pyrifera_M_contig115853.3289.1 vs. uniprot
Match: UPI001C630CC5 (DUF2510 domain-containing protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C630CC5)

HSP 1 Score: 53.5 bits (127), Expect = 4.170e-7
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   10 GWEKGWHPDPTERHELRWHDGSEWTHHVADGGEASTD 120
            G + GWH DP +RH+LR+HDG +WT HVADGG  S D
Sbjct:   15 GRDMGWHGDPWQRHQLRFHDGGQWTEHVADGGFCSLD 51
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BLAST of mRNA_M-pyrifera_M_contig115853.3289.1 vs. uniprot
Match: A0A8J3ER78_9ACTN (Uncharacterized protein n=1 Tax=Egicoccus halophilus TaxID=1670830 RepID=A0A8J3ER78_9ACTN)

HSP 1 Score: 51.6 bits (122), Expect = 1.970e-6
Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:   25 WHPDPTERHELRWHDGSEWTHHVADGGEASTD 120
            WHPDPT +H+ RW DG+ WT HVAD GEA  D
Sbjct:    7 WHPDPTGKHDHRWWDGTTWTEHVADAGEAKVD 38
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BLAST of mRNA_M-pyrifera_M_contig115853.3289.1 vs. uniprot
Match: A0A6I3WSR8_9ACTN (DUF2510 domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6I3WSR8_9ACTN)

HSP 1 Score: 47.4 bits (111), Expect = 6.820e-5
Identity = 19/32 (59.38%), Postives = 23/32 (71.88%), Query Frame = 1 
Query:   25 WHPDPTERHELRWHDGSEWTHHVADGGEASTD 120
            WHPDP  RH+LR+ DGS+WT HV+D G    D
Sbjct:    8 WHPDPMNRHQLRYWDGSQWTEHVSDNGVTGVD 39
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115853.3289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A538CSB1_9ACTN7.260e-870.00DUF2510 domain-containing protein n=1 Tax=Actinomy... [more]
UPI001C630CC54.170e-762.16DUF2510 domain-containing protein n=1 Tax=Iamia sp... [more]
A0A8J3ER78_9ACTN1.970e-665.63Uncharacterized protein n=1 Tax=Egicoccus halophil... [more]
A0A6I3WSR8_9ACTN6.820e-559.38DUF2510 domain-containing protein n=2 Tax=root Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115853contigM-pyrifera_M_contig115853:366..497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.0782053-CDS-M-pyrifera_M_contig115853:365..4971622815675.0782053-CDS-M-pyrifera_M_contig115853:365..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115853 366..497 +
1692277516.244138-CDS-M-pyrifera_M_contig115853:365..4971692277516.244138-CDS-M-pyrifera_M_contig115853:365..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115853 366..497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115853.3289.1prot_M-pyrifera_M_contig115853.3289.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115853 366..497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115853.3289.1

>prot_M-pyrifera_M_contig115853.3289.1 ID=prot_M-pyrifera_M_contig115853.3289.1|Name=mRNA_M-pyrifera_M_contig115853.3289.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
MENGWEKGWHPDPTERHELRWHDGSEWTHHVADGGEASTDEGR*
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mRNA from alignment at M-pyrifera_M_contig115853:366..497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115853.3289.1 ID=mRNA_M-pyrifera_M_contig115853.3289.1|Name=mRNA_M-pyrifera_M_contig115853.3289.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=132bp|location=Sequence derived from alignment at M-pyrifera_M_contig115853:366..497+ (Macrocystis pyrifera P11B4 male)
ATGGAGAATGGCTGGGAGAAGGGTTGGCATCCCGACCCGACCGAGCGCCA
CGAACTCCGCTGGCACGACGGGTCGGAGTGGACCCACCATGTCGCCGACG
GCGGCGAGGCATCGACCGACGAGGGGCGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115853:366..497+

>mRNA_M-pyrifera_M_contig115853.3289.1 ID=mRNA_M-pyrifera_M_contig115853.3289.1|Name=mRNA_M-pyrifera_M_contig115853.3289.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig115853:366..497+ (Macrocystis pyrifera P11B4 male)
ATGGAGAATGGCTGGGAGAAGGGTTGGCATCCCGACCCGACCGAGCGCCA
CGAACTCCGCTGGCACGACGGGTCGGAGTGGACCCACCATGTCGCCGACG
GCGGCGAGGCATCGACCGACGAGGGGCGCTGAATGGAGAATGGCTGGGAG
AAGGGTTGGCATCCCGACCCGACCGAGCGCCACGAACTCCGCTGGCACGA
CGGGTCGGAGTGGACCCACCATGTCGCCGACGGCGGCGAGGCATCGACCG
ACGAGGGGCGCTGA
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